HEADER PROTEIN BINDING 20-NOV-12 3ZCI TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI T4SS PROTEIN CAGL IN A CUBIC TITLE 2 CRYSTAL FORM WITH A DISTORTED HELICAL CONFORMATION OF THE RGD-MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAG PATHOGENICITY ISLAND PROTEIN (CAG18); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-237; COMPND 5 SYNONYM: CAGL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM11 KEYWDS PROTEIN BINDING, KKQEK, SER MUTANT, ADHESION, RGD MOTIF, INTEGRIN KEYWDS 2 BINDING, TYPE IV SECRETION, T4S, VIRULENCE, CAG18, HP0539 EXPDTA X-RAY DIFFRACTION AUTHOR S.BARDEN,H.H.NIEMANN REVDAT 4 25-SEP-19 3ZCI 1 REMARK REVDAT 3 06-MAR-19 3ZCI 1 REMARK LINK REVDAT 2 27-NOV-13 3ZCI 1 JRNL REVDAT 1 09-OCT-13 3ZCI 0 JRNL AUTH S.BARDEN,S.LANGE,N.TEGTMEYER,J.CONRADI,N.SEWALD,S.BACKERT, JRNL AUTH 2 H.H.NIEMANN JRNL TITL A HELICAL RGD MOTIF PROMOTING CELL ADHESION: CRYSTAL JRNL TITL 2 STRUCTURES OF THE HELICOBACTER PYLORI TYPE IV SECRETION JRNL TITL 3 SYSTEM PILUS PROTEIN CAGL JRNL REF STRUCTURE V. 21 1931 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 24076404 JRNL DOI 10.1016/J.STR.2013.08.018 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8683 - 4.5627 1.00 2714 135 0.2134 0.2247 REMARK 3 2 4.5627 - 3.6288 1.00 2649 135 0.1711 0.2197 REMARK 3 3 3.6288 - 3.1722 1.00 2631 142 0.1813 0.2041 REMARK 3 4 3.1722 - 2.8831 1.00 2619 137 0.2043 0.2598 REMARK 3 5 2.8831 - 2.6770 1.00 2614 153 0.2171 0.2848 REMARK 3 6 2.6770 - 2.5195 1.00 2591 143 0.2320 0.2891 REMARK 3 7 2.5195 - 2.3935 1.00 2616 149 0.2603 0.3122 REMARK 3 8 2.3935 - 2.2895 1.00 2573 144 0.2597 0.2999 REMARK 3 9 2.2895 - 2.2015 1.00 2614 148 0.2916 0.2734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 59.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.86780 REMARK 3 B22 (A**2) : 1.86780 REMARK 3 B33 (A**2) : 1.86780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1886 REMARK 3 ANGLE : 1.292 2543 REMARK 3 CHIRALITY : 0.075 292 REMARK 3 PLANARITY : 0.008 324 REMARK 3 DIHEDRAL : 16.831 747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SECONDARY STRUCTURE RESTRAINTS APPLIED REMARK 4 REMARK 4 3ZCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97814, 0.97814, 0.97847 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXCDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION:7 MG/ML. REMARK 280 RESERVOIR: 100 MM MES PH6.5, 1.2 M AMMONIUM SULPHATE, 2-4 % 1,4 REMARK 280 DIOXANE. VAPOR DIFFUSION AT 277 K WITH DROP RATIO OF REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z+1/2 REMARK 290 15555 -X,Y+1/2,-Z+1/2 REMARK 290 16555 X,-Y+1/2,-Z+1/2 REMARK 290 17555 Z,X+1/2,Y+1/2 REMARK 290 18555 Z,-X+1/2,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y+1/2 REMARK 290 20555 -Z,X+1/2,-Y+1/2 REMARK 290 21555 Y,Z+1/2,X+1/2 REMARK 290 22555 -Y,Z+1/2,-X+1/2 REMARK 290 23555 Y,-Z+1/2,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X+1/2 REMARK 290 25555 X+1/2,Y,Z+1/2 REMARK 290 26555 -X+1/2,-Y,Z+1/2 REMARK 290 27555 -X+1/2,Y,-Z+1/2 REMARK 290 28555 X+1/2,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X,Y+1/2 REMARK 290 30555 Z+1/2,-X,-Y+1/2 REMARK 290 31555 -Z+1/2,-X,Y+1/2 REMARK 290 32555 -Z+1/2,X,-Y+1/2 REMARK 290 33555 Y+1/2,Z,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X+1/2 REMARK 290 35555 Y+1/2,-Z,-X+1/2 REMARK 290 36555 -Y+1/2,-Z,X+1/2 REMARK 290 37555 X+1/2,Y+1/2,Z REMARK 290 38555 -X+1/2,-Y+1/2,Z REMARK 290 39555 -X+1/2,Y+1/2,-Z REMARK 290 40555 X+1/2,-Y+1/2,-Z REMARK 290 41555 Z+1/2,X+1/2,Y REMARK 290 42555 Z+1/2,-X+1/2,-Y REMARK 290 43555 -Z+1/2,-X+1/2,Y REMARK 290 44555 -Z+1/2,X+1/2,-Y REMARK 290 45555 Y+1/2,Z+1/2,X REMARK 290 46555 -Y+1/2,Z+1/2,-X REMARK 290 47555 Y+1/2,-Z+1/2,-X REMARK 290 48555 -Y+1/2,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY1 37 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 37 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY3 37 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 38 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 38 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY3 38 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 39 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 39 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY3 39 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 40 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY2 40 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY3 40 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 41 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY2 41 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 41 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 42 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY2 42 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 42 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 43 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY2 43 -1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 43 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 44 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY2 44 1.000000 0.000000 0.000000 90.50100 REMARK 290 SMTRY3 44 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 45 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY2 45 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY3 45 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 46 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY2 46 0.000000 0.000000 1.000000 90.50100 REMARK 290 SMTRY3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 47 0.000000 1.000000 0.000000 90.50100 REMARK 290 SMTRY2 47 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY3 47 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 48 0.000000 -1.000000 0.000000 90.50100 REMARK 290 SMTRY2 48 0.000000 0.000000 -1.000000 90.50100 REMARK 290 SMTRY3 48 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2022 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 51 REMARK 465 THR A 52 REMARK 465 SER A 53 REMARK 465 PRO A 54 REMARK 465 SER A 55 REMARK 465 ALA A 56 REMARK 465 ASN A 57 REMARK 465 ASN A 58 REMARK 465 PRO A 118 REMARK 465 LEU A 119 REMARK 465 ASP A 120 REMARK 465 GLN A 121 REMARK 465 ASN A 122 REMARK 465 THR A 123 REMARK 465 ALA A 124 REMARK 465 GLU A 125 REMARK 465 GLN A 126 REMARK 465 GLN A 127 REMARK 465 CYS A 128 REMARK 465 GLY A 129 REMARK 465 ILE A 130 REMARK 465 GLN A 230 REMARK 465 SER A 231 REMARK 465 SER A 232 REMARK 465 LYS A 233 REMARK 465 ILE A 234 REMARK 465 ILE A 235 REMARK 465 VAL A 236 REMARK 465 LYS A 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 96 O HOH A 2061 2.07 REMARK 500 N GLY A 18 O HOH A 2002 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 20 CB MSE A 20 CG 2.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 20 CA - CB - CG ANGL. DEV. = 42.9 DEGREES REMARK 500 MSE A 20 CB - CG - SE ANGL. DEV. = -50.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 102 -110.37 -137.70 REMARK 500 ASP A 132 174.65 61.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 19 10.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 6.29 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 MESO-2,3-BUTANEDIOL (BU9): CRYO PROTECTANT REMARK 600 1,4-DIETHYLENE DIOXIDE (DIO): CRYSTALLIZATION COCKTAIL REMARK 600 COMPOUND REMARK 600 SULFATE ION (SO4): CRYSTALLIZATION COCKTAIL COMPOUND REMARK 600 CHLORIDE ION (CL): CRYSTALLIZATION COCKTAIL COMPOUND REMARK 600 SELENOMETHIONINE (MSE): CO-TRANSLATIONALLY INCORPORATED FOR REMARK 600 PHASING REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU9 A 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU9 A 1238 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU9 A 1239 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZCJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HELICOBACTER PYLORI T4SS PROTEIN CAGL IN A REMARK 900 TETRAGONAL CRYSTAL FORM WITH A HELICAL RGD -MOTIF (6 MOL PER ASU) REMARK 999 REMARK 999 SEQUENCE REMARK 999 SURFACE ENTROPY REDUCTION MUTANT KKQEK DBREF 3ZCI A 21 237 UNP O25272 O25272_HELPY 21 237 SEQADV 3ZCI GLY A 18 UNP O25272 EXPRESSION TAG SEQADV 3ZCI ALA A 19 UNP O25272 EXPRESSION TAG SEQADV 3ZCI MSE A 20 UNP O25272 EXPRESSION TAG SEQADV 3ZCI ALA A 69 UNP O25272 LYS 69 ENGINEERED MUTATION SEQADV 3ZCI THR A 70 UNP O25272 LYS 70 ENGINEERED MUTATION SEQADV 3ZCI ALA A 147 UNP O25272 GLN 147 ENGINEERED MUTATION SEQADV 3ZCI THR A 148 UNP O25272 GLU 148 ENGINEERED MUTATION SEQADV 3ZCI ALA A 149 UNP O25272 LYS 149 ENGINEERED MUTATION SEQRES 1 A 220 GLY ALA MSE GLU ASP ILE THR SER GLY LEU LYS GLN LEU SEQRES 2 A 220 ASP SER THR TYR GLN GLU THR ASN GLN GLN VAL LEU LYS SEQRES 3 A 220 ASN LEU ASP GLU ILE PHE SER THR THR SER PRO SER ALA SEQRES 4 A 220 ASN ASN GLU MSE GLY GLU GLU ASP ALA LEU ASN ILE ALA SEQRES 5 A 220 THR ALA ALA ILE ALA LEU ARG GLY ASP LEU ALA LEU LEU SEQRES 6 A 220 LYS ALA ASN PHE GLU ALA ASN GLU LEU PHE PHE ILE SER SEQRES 7 A 220 GLU ASP VAL ILE PHE LYS THR TYR MSE SER SER PRO GLU SEQRES 8 A 220 LEU LEU LEU THR TYR MSE LYS ILE ASN PRO LEU ASP GLN SEQRES 9 A 220 ASN THR ALA GLU GLN GLN CYS GLY ILE SER ASP LYS VAL SEQRES 10 A 220 LEU VAL LEU TYR CYS GLU GLY LYS LEU LYS ILE GLU ALA SEQRES 11 A 220 THR ALA GLN ASN ILE ARG GLU ARG LEU GLU THR SER LEU SEQRES 12 A 220 LYS ALA TYR GLN SER ASN ILE GLY GLY THR ALA SER LEU SEQRES 13 A 220 ILE THR ALA SER GLN THR LEU VAL GLU SER LEU LYS ASN SEQRES 14 A 220 LYS ASN PHE ILE LYS GLY ILE ARG LYS LEU MSE LEU ALA SEQRES 15 A 220 HIS ASN LYS VAL PHE LEU ASN TYR LEU GLU GLU LEU ASP SEQRES 16 A 220 ALA LEU GLU ARG SER LEU GLU GLN SER LYS ARG GLN TYR SEQRES 17 A 220 LEU GLN GLU ARG GLN SER SER LYS ILE ILE VAL LYS MODRES 3ZCI MSE A 20 MET SELENOMETHIONINE MODRES 3ZCI MSE A 60 MET SELENOMETHIONINE MODRES 3ZCI MSE A 104 MET SELENOMETHIONINE MODRES 3ZCI MSE A 114 MET SELENOMETHIONINE MODRES 3ZCI MSE A 197 MET SELENOMETHIONINE HET MSE A 20 16 HET MSE A 60 16 HET MSE A 104 16 HET MSE A 114 16 HET MSE A 197 8 HET SO4 A1230 5 HET SO4 A1231 5 HET SO4 A1232 5 HET DIO A1233 6 HET DIO A1234 6 HET BU9 A1235 6 HET DIO A1236 6 HET CL A1237 1 HET BU9 A1238 6 HET BU9 A1239 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM BU9 MESO-2,3-BUTANEDIOL HETNAM CL CHLORIDE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 DIO 3(C4 H8 O2) FORMUL 7 BU9 3(C4 H10 O2) FORMUL 9 CL CL 1- FORMUL 12 HOH *113(H2 O) HELIX 1 1 MSE A 20 PHE A 49 1 30 HELIX 2 2 GLU A 59 GLY A 77 1 19 HELIX 3 3 GLY A 77 LYS A 101 1 25 HELIX 4 4 SER A 106 ASN A 117 1 12 HELIX 5 5 VAL A 134 ILE A 167 1 34 HELIX 6 6 THR A 170 ALA A 176 1 7 HELIX 7 7 THR A 179 GLU A 228 1 50 LINK N AMSE A 20 C ALA A 19 1555 1555 1.32 LINK C AMSE A 20 N GLU A 21 1555 1555 1.34 LINK N BMSE A 20 C ALA A 19 1555 1555 1.35 LINK C BMSE A 20 N GLU A 21 1555 1555 1.33 LINK N AMSE A 60 C AGLU A 59 1555 1555 1.33 LINK C AMSE A 60 N AGLY A 61 1555 1555 1.33 LINK C BMSE A 60 N BGLY A 61 1555 1555 1.33 LINK C BMSE A 104 N BSER A 105 1555 1555 1.33 LINK C AMSE A 104 N ASER A 105 1555 1555 1.33 LINK N BMSE A 104 C BTYR A 103 1555 1555 1.33 LINK N AMSE A 104 C ATYR A 103 1555 1555 1.33 LINK C AMSE A 114 N ALYS A 115 1555 1555 1.33 LINK N BMSE A 114 C BTYR A 113 1555 1555 1.33 LINK C BMSE A 114 N BLYS A 115 1555 1555 1.33 LINK N AMSE A 114 C ATYR A 113 1555 1555 1.33 LINK C MSE A 197 N LEU A 198 1555 1555 1.33 LINK N MSE A 197 C LEU A 196 1555 1555 1.34 SITE 1 AC1 4 ARG A 194 LYS A 195 HOH A2111 HOH A2112 SITE 1 AC2 4 LYS A 187 LYS A 191 ARG A 194 BU9 A1235 SITE 1 AC3 2 MSE A 20 ASN A 206 SITE 1 AC4 6 ASP A 31 TYR A 34 LEU A 79 LYS A 83 SITE 2 AC4 6 PHE A 86 PHE A 189 SITE 1 AC5 4 VAL A 41 GLU A 182 ASN A 186 HOH A2086 SITE 1 AC6 9 LEU A 160 TYR A 163 LYS A 187 LEU A 198 SITE 2 AC6 9 ASN A 201 SO4 A1231 HOH A2071 HOH A2094 SITE 3 AC6 9 HOH A2103 SITE 1 AC7 1 ASP A 22 SITE 1 AC8 2 ARG A 153 LYS A 185 SITE 1 AC9 3 SER A 177 GLN A 178 HOH A2083 SITE 1 BC1 1 LYS A 187 CRYST1 181.002 181.002 181.002 90.00 90.00 90.00 F 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005525 0.00000