data_3ZD3 # _entry.id 3ZD3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZD3 PDBE EBI-54901 WWPDB D_1290054901 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2013-03-06 _pdbx_database_PDB_obs_spr.pdb_id 3ZP8 _pdbx_database_PDB_obs_spr.replace_pdb_id 3ZD3 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZD4 unspecified 'FULL-LENGTH HAMMERHEAD RIBOZYME WITH G12A SUBSTITUTION AT THE GENERAL BASE POSITION' PDB 3ZD5 unspecified 'THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME' # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3ZD3 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-11-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scott, W.G.' 1 'Martick, M.' 2 'Anderson, M.' 3 'Schultz, E.' 4 # _citation.id primary _citation.title 'High-Resolution Full-Length Hammerhead Ribozyme' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Anderson, M.' 1 primary 'Schultz, E.' 2 primary 'Martick, M.' 3 primary 'Scott, W.G.' 4 # _cell.entry_id 3ZD3 _cell.length_a 50.820 _cell.length_b 68.530 _cell.length_c 58.900 _cell.angle_alpha 90.00 _cell.angle_beta 112.35 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZD3 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HAMMERHEAD RIBOZYME, ENZYME STRAND' 13941.326 1 ? ? ? ;GDP AT 5' END OF CHAIN A ; 2 polymer syn 'HAMMERHEAD RIBOZYME, SUBTRATE STRAND' 6333.816 1 ? ? ? ;OMC OR 2'-OMEC AT POSITION 6 OF CHAIN B ; 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 10 ? ? ? ? 5 water nat water 18.015 301 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GDP)GAUGUACUACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCC' GGAUGUACUACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCC A ? 2 polyribonucleotide no yes 'GGCGU(OMC)CUGGUAUCCAAUC(DC)' GGCGUCCUGGUAUCCAAUCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GDP n 1 2 G n 1 3 A n 1 4 U n 1 5 G n 1 6 U n 1 7 A n 1 8 C n 1 9 U n 1 10 A n 1 11 C n 1 12 C n 1 13 A n 1 14 G n 1 15 C n 1 16 U n 1 17 G n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 G n 1 23 U n 1 24 C n 1 25 C n 1 26 C n 1 27 A n 1 28 A n 1 29 A n 1 30 U n 1 31 A n 1 32 G n 1 33 G n 1 34 A n 1 35 C n 1 36 G n 1 37 A n 1 38 A n 1 39 A n 1 40 C n 1 41 G n 1 42 C n 1 43 C n 2 1 G n 2 2 G n 2 3 C n 2 4 G n 2 5 U n 2 6 OMC n 2 7 C n 2 8 U n 2 9 G n 2 10 G n 2 11 U n 2 12 A n 2 13 U n 2 14 C n 2 15 C n 2 16 A n 2 17 A n 2 18 U n 2 19 C n 2 20 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? 2 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 3ZD3 1 ? ? 3ZD3 ? 2 PDB 3ZD3 2 ? ? 3ZD3 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ZD3 A 1 ? 43 ? 3ZD3 1 ? 43 ? 1 43 2 2 3ZD3 B 1 ? 20 ? 3ZD3 1 ? 20 ? 1 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? # _exptl.entry_id 3ZD3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.42 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZD3 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.39 _reflns.d_resolution_high 1.55 _reflns.number_obs 26462 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.90 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.63 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.80 _reflns_shell.pdbx_redundancy 3.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZD3 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 26446 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.390 _refine.ls_d_res_high 1.550 _refine.ls_percent_reflns_obs 97.48 _refine.ls_R_factor_obs 0.1875 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1850 _refine.ls_R_factor_R_free 0.2185 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.6 _refine.ls_number_reflns_R_free 2002 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.50 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2GOZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.20 _refine.pdbx_overall_phase_error 23.03 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1344 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 301 _refine_hist.number_atoms_total 1656 _refine_hist.d_res_high 1.550 _refine_hist.d_res_low 20.390 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1501 'X-RAY DIFFRACTION' ? f_angle_d 0.975 ? ? 2333 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.425 ? ? 746 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 311 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 63 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.5500 1.5888 1797 0.3104 100.00 0.3507 . . 133 . . 'X-RAY DIFFRACTION' . 1.5888 1.6317 1775 0.2766 99.00 0.2924 . . 150 . . 'X-RAY DIFFRACTION' . 1.6317 1.6797 1753 0.2497 99.00 0.2849 . . 149 . . 'X-RAY DIFFRACTION' . 1.6797 1.7339 1780 0.2306 100.00 0.2716 . . 148 . . 'X-RAY DIFFRACTION' . 1.7339 1.7958 1774 0.2194 100.00 0.2652 . . 132 . . 'X-RAY DIFFRACTION' . 1.7958 1.8677 1775 0.2213 100.00 0.2721 . . 162 . . 'X-RAY DIFFRACTION' . 1.8677 1.9526 1797 0.2265 100.00 0.2535 . . 136 . . 'X-RAY DIFFRACTION' . 1.9526 2.0555 1752 0.2168 100.00 0.2474 . . 149 . . 'X-RAY DIFFRACTION' . 2.0555 2.1841 1774 0.2157 99.00 0.2215 . . 147 . . 'X-RAY DIFFRACTION' . 2.1841 2.3525 1780 0.2048 99.00 0.2521 . . 146 . . 'X-RAY DIFFRACTION' . 2.3525 2.5888 1751 0.2019 98.00 0.2432 . . 149 . . 'X-RAY DIFFRACTION' . 2.5888 2.9625 1759 0.2033 98.00 0.2293 . . 146 . . 'X-RAY DIFFRACTION' . 2.9625 3.7287 1700 0.1440 95.00 0.1912 . . 143 . . 'X-RAY DIFFRACTION' . 3.7287 20.3919 1477 0.1482 80.00 0.1665 . . 112 . . # _struct.entry_id 3ZD3 _struct.title 'High-resolution full-length hammerhead ribozyme in the presence of Mg ion.' _struct.pdbx_descriptor '43-MER, UNKNOWN ATOM OR ION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZD3 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, CATALYTIC RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? O N N 5 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GDP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GDP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.589 ? metalc1 metalc ? ? D MG . MG ? ? ? 1_555 A U 16 O4 ? ? A MG 1044 A U 16 2_454 ? ? ? ? ? ? ? 2.440 ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 A U 19 O2 ? ? A MG 1044 A U 19 1_555 ? ? ? ? ? ? ? 2.482 ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1044 A HOH 2108 2_454 ? ? ? ? ? ? ? 2.849 ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 A U 19 OP2 ? ? A MG 1044 A U 19 2_454 ? ? ? ? ? ? ? 2.500 ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 A U 19 "O2'" ? ? A MG 1044 A U 19 1_555 ? ? ? ? ? ? ? 2.346 ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1044 A HOH 2217 1_555 ? ? ? ? ? ? ? 2.551 ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1045 A HOH 2131 1_555 ? ? ? ? ? ? ? 2.547 ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 A A 21 OP2 ? ? A MG 1045 A A 21 1_555 ? ? ? ? ? ? ? 2.321 ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1045 A HOH 2133 1_555 ? ? ? ? ? ? ? 2.544 ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 A G 22 N7 ? ? A MG 1045 A G 22 1_555 ? ? ? ? ? ? ? 2.584 ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1045 A HOH 2132 1_555 ? ? ? ? ? ? ? 2.398 ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1045 A HOH 2139 1_555 ? ? ? ? ? ? ? 2.305 ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1046 A HOH 2103 2_454 ? ? ? ? ? ? ? 2.691 ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1046 A HOH 2107 1_555 ? ? ? ? ? ? ? 2.239 ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1046 A HOH 2108 1_555 ? ? ? ? ? ? ? 2.417 ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 A U 16 O4 ? ? A MG 1046 A U 16 1_555 ? ? ? ? ? ? ? 2.388 ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 A U 19 O2 ? ? A MG 1046 A U 19 2_454 ? ? ? ? ? ? ? 2.452 ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1046 A HOH 2124 2_454 ? ? ? ? ? ? ? 2.216 ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 A G 36 O6 ? ? A MG 1047 A G 36 1_555 ? ? ? ? ? ? ? 2.358 ? metalc20 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1047 A HOH 2183 1_555 ? ? ? ? ? ? ? 2.471 ? metalc21 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1047 A HOH 2179 1_555 ? ? ? ? ? ? ? 2.636 ? metalc22 metalc ? ? G MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1047 A HOH 2174 1_555 ? ? ? ? ? ? ? 2.293 ? metalc23 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1048 A HOH 2050 1_555 ? ? ? ? ? ? ? 2.350 ? metalc24 metalc ? ? I MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1049 A HOH 2073 1_555 ? ? ? ? ? ? ? 2.217 ? metalc25 metalc ? ? I MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1049 A HOH 2162 1_555 ? ? ? ? ? ? ? 2.512 ? metalc26 metalc ? ? I MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1049 A HOH 2072 1_555 ? ? ? ? ? ? ? 2.303 ? metalc27 metalc ? ? I MG . MG ? ? ? 1_555 A U 9 O2 ? ? A MG 1049 A U 9 1_555 ? ? ? ? ? ? ? 2.330 ? metalc28 metalc ? ? I MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1049 A HOH 2155 1_555 ? ? ? ? ? ? ? 2.640 ? metalc29 metalc ? ? I MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1049 A HOH 2071 1_555 ? ? ? ? ? ? ? 2.566 ? metalc30 metalc ? ? J MG . MG ? ? ? 1_555 A A 27 N7 ? ? A MG 1050 A A 27 1_555 ? ? ? ? ? ? ? 2.504 ? metalc31 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1050 A HOH 2145 1_555 ? ? ? ? ? ? ? 2.383 ? metalc32 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1050 A HOH 2148 1_555 ? ? ? ? ? ? ? 2.418 ? metalc33 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1050 A HOH 2150 1_555 ? ? ? ? ? ? ? 2.347 ? metalc34 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1050 A HOH 2219 1_555 ? ? ? ? ? ? ? 2.808 ? metalc35 metalc ? ? J MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1050 A HOH 2060 1_555 ? ? ? ? ? ? ? 2.545 ? metalc36 metalc ? ? K MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1051 A HOH 2100 1_555 ? ? ? ? ? ? ? 2.288 ? metalc37 metalc ? ? K MG . MG ? ? ? 1_555 A U 19 O4 ? ? A MG 1051 A U 19 1_555 ? ? ? ? ? ? ? 2.571 ? metalc38 metalc ? ? K MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 1051 A HOH 2100 2_454 ? ? ? ? ? ? ? 2.287 ? metalc39 metalc ? ? K MG . MG ? ? ? 1_555 A U 19 O4 ? ? A MG 1051 A U 19 2_454 ? ? ? ? ? ? ? 2.570 ? covale2 covale ? ? B OMC 6 P ? ? ? 1_555 B U 5 "O3'" ? ? B OMC 6 B U 5 1_555 ? ? ? ? ? ? ? 1.606 ? covale3 covale ? ? B OMC 6 "O3'" ? ? ? 1_555 B C 7 P ? ? B OMC 6 B C 7 1_555 ? ? ? ? ? ? ? 1.594 ? covale4 covale ? ? B DC 20 P ? ? ? 1_555 B C 19 "O3'" ? ? B DC 20 B C 19 1_555 ? ? ? ? ? ? ? 1.604 ? metalc40 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 1021 B HOH 2048 1_555 ? ? ? ? ? ? ? 2.330 ? metalc41 metalc ? ? L MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 1021 A HOH 2164 1_555 ? ? ? ? ? ? ? 2.379 ? metalc42 metalc ? ? L MG . MG ? ? ? 1_555 B G 10 N7 ? ? B MG 1021 B G 10 1_555 ? ? ? ? ? ? ? 2.544 ? metalc43 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 1021 B HOH 2042 1_555 ? ? ? ? ? ? ? 2.492 ? metalc44 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 1021 B HOH 2049 1_555 ? ? ? ? ? ? ? 2.457 ? metalc45 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 1021 B HOH 2040 1_555 ? ? ? ? ? ? ? 2.576 ? metalc46 metalc ? ? M MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 1022 A HOH 2161 1_555 ? ? ? ? ? ? ? 2.720 ? metalc47 metalc ? ? M MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 1022 B HOH 2062 1_555 ? ? ? ? ? ? ? 2.340 ? metalc48 metalc ? ? M MG . MG ? ? ? 1_555 B U 13 O4 ? ? B MG 1022 B U 13 1_555 ? ? ? ? ? ? ? 2.984 ? hydrog1 hydrog ? ? A GDP 1 N1 ? ? ? 1_555 B DC 20 N3 ? ? A GDP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A GDP 1 N2 ? ? ? 1_555 B DC 20 O2 ? ? A GDP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A GDP 1 O6 ? ? ? 1_555 B DC 20 N4 ? ? A GDP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 18 N3 ? ? A A 3 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 18 O4 ? ? A A 3 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B C 15 N4 ? ? A U 4 B C 15 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? hydrog10 hydrog ? ? A U 4 O2 ? ? ? 1_555 B A 17 N6 ? ? A U 4 B A 17 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 28 N7 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 A A 28 N6 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 A C 26 O2 ? ? A C 8 A C 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? hydrog17 hydrog ? ? A C 8 O2 ? ? ? 1_555 A C 26 N4 ? ? A C 8 A C 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? hydrog18 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 9 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 9 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 10 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 10 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A A 13 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 13 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 13 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 38 N1 ? ? A G 17 A A 38 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog37 hydrog ? ? A A 21 N6 ? ? ? 1_555 A G 36 N3 ? ? A A 21 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog38 hydrog ? ? A A 21 N7 ? ? ? 1_555 A G 36 N2 ? ? A A 21 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog39 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 23 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 23 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A A 31 N6 ? ? ? 1_555 B U 13 O2 ? ? A A 31 B U 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog51 hydrog ? ? A A 31 N7 ? ? ? 1_555 B U 13 N3 ? ? A A 31 B U 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog52 hydrog ? ? A A 37 N6 ? ? ? 1_555 B OMC 6 O2 ? ? A A 37 B OMC 6 1_555 ? ? ? ? ? ? 'A-OMC MISPAIR' ? ? hydrog53 hydrog ? ? A A 38 N6 ? ? ? 1_555 B OMC 6 O2 ? ? A A 38 B OMC 6 1_555 ? ? ? ? ? ? 'A-OMC MISPAIR' ? ? hydrog54 hydrog ? ? A A 39 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 39 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A A 39 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 39 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? A C 40 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? A C 40 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? A C 40 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A C 42 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A C 42 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A C 42 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A C 43 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A C 43 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? A C 43 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE DC B 20' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 1044' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 1045' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MG A 1046' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG B 1021' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A 1047' AC7 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG B 1022' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG A 1048' AC9 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 1049' BC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 1050' BC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG A 1051' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GDP A 1 ? GDP A 1 . ? 1_555 ? 2 AC1 8 G A 2 ? G A 2 . ? 1_555 ? 3 AC1 8 G A 14 ? G A 14 . ? 4_455 ? 4 AC1 8 G B 1 ? G B 1 . ? 1_656 ? 5 AC1 8 C B 19 ? C B 19 . ? 1_555 ? 6 AC1 8 HOH O . ? HOH B 2078 . ? 1_555 ? 7 AC1 8 HOH O . ? HOH B 2082 . ? 1_555 ? 8 AC1 8 HOH O . ? HOH B 2083 . ? 1_555 ? 9 AC2 6 U A 16 ? U A 16 . ? 2_454 ? 10 AC2 6 U A 19 ? U A 19 . ? 1_555 ? 11 AC2 6 U A 19 ? U A 19 . ? 2_454 ? 12 AC2 6 MG F . ? MG A 1046 . ? 2_454 ? 13 AC2 6 HOH N . ? HOH A 2108 . ? 2_454 ? 14 AC2 6 HOH N . ? HOH A 2217 . ? 1_555 ? 15 AC3 6 A A 21 ? A A 21 . ? 1_555 ? 16 AC3 6 G A 22 ? G A 22 . ? 1_555 ? 17 AC3 6 HOH N . ? HOH A 2131 . ? 1_555 ? 18 AC3 6 HOH N . ? HOH A 2132 . ? 1_555 ? 19 AC3 6 HOH N . ? HOH A 2133 . ? 1_555 ? 20 AC3 6 HOH N . ? HOH A 2139 . ? 1_555 ? 21 AC4 7 U A 16 ? U A 16 . ? 1_555 ? 22 AC4 7 U A 19 ? U A 19 . ? 2_454 ? 23 AC4 7 MG D . ? MG A 1044 . ? 2_454 ? 24 AC4 7 HOH N . ? HOH A 2103 . ? 2_454 ? 25 AC4 7 HOH N . ? HOH A 2107 . ? 1_555 ? 26 AC4 7 HOH N . ? HOH A 2108 . ? 1_555 ? 27 AC4 7 HOH N . ? HOH A 2124 . ? 2_454 ? 28 AC5 6 HOH N . ? HOH A 2164 . ? 1_555 ? 29 AC5 6 G B 10 ? G B 10 . ? 1_555 ? 30 AC5 6 HOH O . ? HOH B 2040 . ? 1_555 ? 31 AC5 6 HOH O . ? HOH B 2042 . ? 1_555 ? 32 AC5 6 HOH O . ? HOH B 2048 . ? 1_555 ? 33 AC5 6 HOH O . ? HOH B 2049 . ? 1_555 ? 34 AC6 5 G A 36 ? G A 36 . ? 1_555 ? 35 AC6 5 HOH N . ? HOH A 2174 . ? 1_555 ? 36 AC6 5 HOH N . ? HOH A 2179 . ? 1_555 ? 37 AC6 5 HOH N . ? HOH A 2183 . ? 1_555 ? 38 AC6 5 OMC B 6 ? OMC B 6 . ? 1_555 ? 39 AC7 6 HOH N . ? HOH A 2161 . ? 1_555 ? 40 AC7 6 U B 11 ? U B 11 . ? 1_555 ? 41 AC7 6 A B 12 ? A B 12 . ? 1_555 ? 42 AC7 6 U B 13 ? U B 13 . ? 1_555 ? 43 AC7 6 HOH O . ? HOH B 2053 . ? 1_555 ? 44 AC7 6 HOH O . ? HOH B 2062 . ? 1_555 ? 45 AC8 3 U A 4 ? U A 4 . ? 1_555 ? 46 AC8 3 G A 5 ? G A 5 . ? 1_555 ? 47 AC8 3 HOH N . ? HOH A 2050 . ? 1_555 ? 48 AC9 6 U A 9 ? U A 9 . ? 1_555 ? 49 AC9 6 HOH N . ? HOH A 2071 . ? 1_555 ? 50 AC9 6 HOH N . ? HOH A 2072 . ? 1_555 ? 51 AC9 6 HOH N . ? HOH A 2073 . ? 1_555 ? 52 AC9 6 HOH N . ? HOH A 2155 . ? 1_555 ? 53 AC9 6 HOH N . ? HOH A 2162 . ? 1_555 ? 54 BC1 6 A A 27 ? A A 27 . ? 1_555 ? 55 BC1 6 HOH N . ? HOH A 2060 . ? 1_555 ? 56 BC1 6 HOH N . ? HOH A 2145 . ? 1_555 ? 57 BC1 6 HOH N . ? HOH A 2148 . ? 1_555 ? 58 BC1 6 HOH N . ? HOH A 2150 . ? 1_555 ? 59 BC1 6 HOH N . ? HOH A 2219 . ? 1_555 ? 60 BC2 4 U A 19 ? U A 19 . ? 1_555 ? 61 BC2 4 U A 19 ? U A 19 . ? 2_454 ? 62 BC2 4 HOH N . ? HOH A 2100 . ? 2_454 ? 63 BC2 4 HOH N . ? HOH A 2100 . ? 1_555 ? # _database_PDB_matrix.entry_id 3ZD3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZD3 _atom_sites.fract_transf_matrix[1][1] 0.019677 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008090 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014592 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018357 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GDP 1 1 1 GDP GDP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 U 23 23 23 U U A . n A 1 24 C 24 24 24 C C A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 U 30 30 30 U U A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 C 3 3 3 C C B . n B 2 4 G 4 4 4 G G B . n B 2 5 U 5 5 5 U U B . n B 2 6 OMC 6 6 6 OMC OMC B . n B 2 7 C 7 7 7 C C B . n B 2 8 U 8 8 8 U U B . n B 2 9 G 9 9 9 G G B . n B 2 10 G 10 10 10 G G B . n B 2 11 U 11 11 11 U U B . n B 2 12 A 12 12 12 A A B . n B 2 13 U 13 13 13 U U B . n B 2 14 C 14 14 14 C C B . n B 2 15 C 15 15 15 C C B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 U 18 18 18 U U B . n B 2 19 C 19 19 19 C C B . n B 2 20 DC 20 20 20 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UNX 1 1000 1000 UNX UNX A . D 4 MG 1 1044 1044 MG MG A . E 4 MG 1 1045 1045 MG MG A . F 4 MG 1 1046 1046 MG MG A . G 4 MG 1 1047 1047 MG MG A . H 4 MG 1 1048 1048 MG MG A . I 4 MG 1 1049 1049 MG MG A . J 4 MG 1 1050 1050 MG MG A . K 4 MG 1 1051 1051 MG MG A . L 4 MG 1 1021 1021 MG MG B . M 4 MG 1 1022 1022 MG MG B . N 5 HOH 1 2001 2001 HOH HOH A . N 5 HOH 2 2002 2002 HOH HOH A . N 5 HOH 3 2003 2003 HOH HOH A . N 5 HOH 4 2004 2004 HOH HOH A . N 5 HOH 5 2005 2005 HOH HOH A . N 5 HOH 6 2006 2006 HOH HOH A . N 5 HOH 7 2007 2007 HOH HOH A . N 5 HOH 8 2008 2008 HOH HOH A . N 5 HOH 9 2009 2009 HOH HOH A . N 5 HOH 10 2010 2010 HOH HOH A . N 5 HOH 11 2011 2011 HOH HOH A . N 5 HOH 12 2012 2012 HOH HOH A . N 5 HOH 13 2013 2013 HOH HOH A . N 5 HOH 14 2014 2014 HOH HOH A . N 5 HOH 15 2015 2015 HOH HOH A . N 5 HOH 16 2016 2016 HOH HOH A . N 5 HOH 17 2017 2017 HOH HOH A . N 5 HOH 18 2018 2018 HOH HOH A . N 5 HOH 19 2019 2019 HOH HOH A . N 5 HOH 20 2020 2020 HOH HOH A . N 5 HOH 21 2021 2021 HOH HOH A . N 5 HOH 22 2022 2022 HOH HOH A . N 5 HOH 23 2023 2023 HOH HOH A . N 5 HOH 24 2024 2024 HOH HOH A . N 5 HOH 25 2025 2025 HOH HOH A . N 5 HOH 26 2026 2026 HOH HOH A . N 5 HOH 27 2027 2027 HOH HOH A . N 5 HOH 28 2028 2028 HOH HOH A . N 5 HOH 29 2029 2029 HOH HOH A . N 5 HOH 30 2030 2030 HOH HOH A . N 5 HOH 31 2031 2031 HOH HOH A . N 5 HOH 32 2032 2032 HOH HOH A . N 5 HOH 33 2033 2033 HOH HOH A . N 5 HOH 34 2034 2034 HOH HOH A . N 5 HOH 35 2035 2035 HOH HOH A . N 5 HOH 36 2036 2036 HOH HOH A . N 5 HOH 37 2037 2037 HOH HOH A . N 5 HOH 38 2038 2038 HOH HOH A . N 5 HOH 39 2039 2039 HOH HOH A . N 5 HOH 40 2040 2040 HOH HOH A . N 5 HOH 41 2041 2041 HOH HOH A . N 5 HOH 42 2042 2042 HOH HOH A . N 5 HOH 43 2043 2043 HOH HOH A . N 5 HOH 44 2044 2044 HOH HOH A . N 5 HOH 45 2045 2045 HOH HOH A . N 5 HOH 46 2046 2046 HOH HOH A . N 5 HOH 47 2047 2047 HOH HOH A . N 5 HOH 48 2048 2048 HOH HOH A . N 5 HOH 49 2049 2049 HOH HOH A . N 5 HOH 50 2050 2050 HOH HOH A . N 5 HOH 51 2051 2051 HOH HOH A . N 5 HOH 52 2052 2052 HOH HOH A . N 5 HOH 53 2053 2053 HOH HOH A . N 5 HOH 54 2054 2054 HOH HOH A . N 5 HOH 55 2055 2055 HOH HOH A . N 5 HOH 56 2056 2056 HOH HOH A . N 5 HOH 57 2057 2057 HOH HOH A . N 5 HOH 58 2058 2058 HOH HOH A . N 5 HOH 59 2059 2059 HOH HOH A . N 5 HOH 60 2060 2060 HOH HOH A . N 5 HOH 61 2061 2061 HOH HOH A . N 5 HOH 62 2062 2062 HOH HOH A . N 5 HOH 63 2063 2063 HOH HOH A . N 5 HOH 64 2064 2064 HOH HOH A . N 5 HOH 65 2065 2065 HOH HOH A . N 5 HOH 66 2066 2066 HOH HOH A . N 5 HOH 67 2067 2067 HOH HOH A . N 5 HOH 68 2068 2068 HOH HOH A . N 5 HOH 69 2069 2069 HOH HOH A . N 5 HOH 70 2070 2070 HOH HOH A . N 5 HOH 71 2071 2071 HOH HOH A . N 5 HOH 72 2072 2072 HOH HOH A . N 5 HOH 73 2073 2073 HOH HOH A . N 5 HOH 74 2074 2074 HOH HOH A . N 5 HOH 75 2075 2075 HOH HOH A . N 5 HOH 76 2076 2076 HOH HOH A . N 5 HOH 77 2077 2077 HOH HOH A . N 5 HOH 78 2078 2078 HOH HOH A . N 5 HOH 79 2079 2079 HOH HOH A . N 5 HOH 80 2080 2080 HOH HOH A . N 5 HOH 81 2081 2081 HOH HOH A . N 5 HOH 82 2082 2082 HOH HOH A . N 5 HOH 83 2083 2083 HOH HOH A . N 5 HOH 84 2084 2084 HOH HOH A . N 5 HOH 85 2085 2085 HOH HOH A . N 5 HOH 86 2086 2086 HOH HOH A . N 5 HOH 87 2087 2087 HOH HOH A . N 5 HOH 88 2088 2088 HOH HOH A . N 5 HOH 89 2089 2089 HOH HOH A . N 5 HOH 90 2090 2090 HOH HOH A . N 5 HOH 91 2091 2091 HOH HOH A . N 5 HOH 92 2092 2092 HOH HOH A . N 5 HOH 93 2093 2093 HOH HOH A . N 5 HOH 94 2094 2094 HOH HOH A . N 5 HOH 95 2095 2095 HOH HOH A . N 5 HOH 96 2096 2096 HOH HOH A . N 5 HOH 97 2097 2097 HOH HOH A . N 5 HOH 98 2098 2098 HOH HOH A . N 5 HOH 99 2099 2099 HOH HOH A . N 5 HOH 100 2100 2100 HOH HOH A . N 5 HOH 101 2101 2101 HOH HOH A . N 5 HOH 102 2102 2102 HOH HOH A . N 5 HOH 103 2103 2103 HOH HOH A . N 5 HOH 104 2104 2104 HOH HOH A . N 5 HOH 105 2105 2105 HOH HOH A . N 5 HOH 106 2106 2106 HOH HOH A . N 5 HOH 107 2107 2107 HOH HOH A . N 5 HOH 108 2108 2108 HOH HOH A . N 5 HOH 109 2109 2109 HOH HOH A . N 5 HOH 110 2110 2110 HOH HOH A . N 5 HOH 111 2111 2111 HOH HOH A . N 5 HOH 112 2112 2112 HOH HOH A . N 5 HOH 113 2113 2113 HOH HOH A . N 5 HOH 114 2114 2114 HOH HOH A . N 5 HOH 115 2115 2115 HOH HOH A . N 5 HOH 116 2116 2116 HOH HOH A . N 5 HOH 117 2117 2117 HOH HOH A . N 5 HOH 118 2118 2118 HOH HOH A . N 5 HOH 119 2119 2119 HOH HOH A . N 5 HOH 120 2120 2120 HOH HOH A . N 5 HOH 121 2121 2121 HOH HOH A . N 5 HOH 122 2122 2122 HOH HOH A . N 5 HOH 123 2123 2123 HOH HOH A . N 5 HOH 124 2124 2124 HOH HOH A . N 5 HOH 125 2125 2125 HOH HOH A . N 5 HOH 126 2126 2126 HOH HOH A . N 5 HOH 127 2127 2127 HOH HOH A . N 5 HOH 128 2129 2129 HOH HOH A . N 5 HOH 129 2130 2130 HOH HOH A . N 5 HOH 130 2131 2131 HOH HOH A . N 5 HOH 131 2132 2132 HOH HOH A . N 5 HOH 132 2133 2133 HOH HOH A . N 5 HOH 133 2134 2134 HOH HOH A . N 5 HOH 134 2135 2135 HOH HOH A . N 5 HOH 135 2136 2136 HOH HOH A . N 5 HOH 136 2137 2137 HOH HOH A . N 5 HOH 137 2138 2138 HOH HOH A . N 5 HOH 138 2139 2139 HOH HOH A . N 5 HOH 139 2140 2140 HOH HOH A . N 5 HOH 140 2141 2141 HOH HOH A . N 5 HOH 141 2142 2142 HOH HOH A . N 5 HOH 142 2143 2143 HOH HOH A . N 5 HOH 143 2144 2144 HOH HOH A . N 5 HOH 144 2145 2145 HOH HOH A . N 5 HOH 145 2146 2146 HOH HOH A . N 5 HOH 146 2147 2147 HOH HOH A . N 5 HOH 147 2148 2148 HOH HOH A . N 5 HOH 148 2149 2149 HOH HOH A . N 5 HOH 149 2150 2150 HOH HOH A . N 5 HOH 150 2151 2151 HOH HOH A . N 5 HOH 151 2152 2152 HOH HOH A . N 5 HOH 152 2153 2153 HOH HOH A . N 5 HOH 153 2154 2154 HOH HOH A . N 5 HOH 154 2155 2155 HOH HOH A . N 5 HOH 155 2156 2156 HOH HOH A . N 5 HOH 156 2157 2157 HOH HOH A . N 5 HOH 157 2158 2158 HOH HOH A . N 5 HOH 158 2159 2159 HOH HOH A . N 5 HOH 159 2160 2160 HOH HOH A . N 5 HOH 160 2161 2161 HOH HOH A . N 5 HOH 161 2162 2162 HOH HOH A . N 5 HOH 162 2163 2163 HOH HOH A . N 5 HOH 163 2164 2164 HOH HOH A . N 5 HOH 164 2165 2165 HOH HOH A . N 5 HOH 165 2166 2166 HOH HOH A . N 5 HOH 166 2167 2167 HOH HOH A . N 5 HOH 167 2168 2168 HOH HOH A . N 5 HOH 168 2169 2169 HOH HOH A . N 5 HOH 169 2170 2170 HOH HOH A . N 5 HOH 170 2171 2171 HOH HOH A . N 5 HOH 171 2172 2172 HOH HOH A . N 5 HOH 172 2173 2173 HOH HOH A . N 5 HOH 173 2174 2174 HOH HOH A . N 5 HOH 174 2175 2175 HOH HOH A . N 5 HOH 175 2176 2176 HOH HOH A . N 5 HOH 176 2177 2177 HOH HOH A . N 5 HOH 177 2178 2178 HOH HOH A . N 5 HOH 178 2179 2179 HOH HOH A . N 5 HOH 179 2180 2180 HOH HOH A . N 5 HOH 180 2181 2181 HOH HOH A . N 5 HOH 181 2182 2182 HOH HOH A . N 5 HOH 182 2183 2183 HOH HOH A . N 5 HOH 183 2184 2184 HOH HOH A . N 5 HOH 184 2185 2185 HOH HOH A . N 5 HOH 185 2186 2186 HOH HOH A . N 5 HOH 186 2187 2187 HOH HOH A . N 5 HOH 187 2188 2188 HOH HOH A . N 5 HOH 188 2189 2189 HOH HOH A . N 5 HOH 189 2190 2190 HOH HOH A . N 5 HOH 190 2191 2191 HOH HOH A . N 5 HOH 191 2192 2192 HOH HOH A . N 5 HOH 192 2193 2193 HOH HOH A . N 5 HOH 193 2194 2194 HOH HOH A . N 5 HOH 194 2195 2195 HOH HOH A . N 5 HOH 195 2196 2196 HOH HOH A . N 5 HOH 196 2197 2197 HOH HOH A . N 5 HOH 197 2198 2198 HOH HOH A . N 5 HOH 198 2199 2199 HOH HOH A . N 5 HOH 199 2200 2200 HOH HOH A . N 5 HOH 200 2201 2201 HOH HOH A . N 5 HOH 201 2202 2202 HOH HOH A . N 5 HOH 202 2203 2203 HOH HOH A . N 5 HOH 203 2204 2204 HOH HOH A . N 5 HOH 204 2205 2205 HOH HOH A . N 5 HOH 205 2206 2206 HOH HOH A . N 5 HOH 206 2207 2207 HOH HOH A . N 5 HOH 207 2208 2208 HOH HOH A . N 5 HOH 208 2209 2209 HOH HOH A . N 5 HOH 209 2210 2210 HOH HOH A . N 5 HOH 210 2211 2211 HOH HOH A . N 5 HOH 211 2212 2212 HOH HOH A . N 5 HOH 212 2213 2213 HOH HOH A . N 5 HOH 213 2214 2214 HOH HOH A . N 5 HOH 214 2215 2215 HOH HOH A . N 5 HOH 215 2216 2216 HOH HOH A . N 5 HOH 216 2217 2217 HOH HOH A . N 5 HOH 217 2218 2218 HOH HOH A . N 5 HOH 218 2219 2219 HOH HOH A . O 5 HOH 1 2001 2001 HOH HOH B . O 5 HOH 2 2002 2002 HOH HOH B . O 5 HOH 3 2003 2003 HOH HOH B . O 5 HOH 4 2004 2004 HOH HOH B . O 5 HOH 5 2005 2005 HOH HOH B . O 5 HOH 6 2006 2006 HOH HOH B . O 5 HOH 7 2007 2007 HOH HOH B . O 5 HOH 8 2008 2008 HOH HOH B . O 5 HOH 9 2009 2009 HOH HOH B . O 5 HOH 10 2010 2010 HOH HOH B . O 5 HOH 11 2011 2011 HOH HOH B . O 5 HOH 12 2012 2012 HOH HOH B . O 5 HOH 13 2013 2013 HOH HOH B . O 5 HOH 14 2014 2014 HOH HOH B . O 5 HOH 15 2015 2015 HOH HOH B . O 5 HOH 16 2016 2016 HOH HOH B . O 5 HOH 17 2017 2017 HOH HOH B . O 5 HOH 18 2018 2018 HOH HOH B . O 5 HOH 19 2019 2019 HOH HOH B . O 5 HOH 20 2020 2020 HOH HOH B . O 5 HOH 21 2021 2021 HOH HOH B . O 5 HOH 22 2022 2022 HOH HOH B . O 5 HOH 23 2023 2023 HOH HOH B . O 5 HOH 24 2024 2024 HOH HOH B . O 5 HOH 25 2025 2025 HOH HOH B . O 5 HOH 26 2026 2026 HOH HOH B . O 5 HOH 27 2027 2027 HOH HOH B . O 5 HOH 28 2028 2028 HOH HOH B . O 5 HOH 29 2029 2029 HOH HOH B . O 5 HOH 30 2030 2030 HOH HOH B . O 5 HOH 31 2031 2031 HOH HOH B . O 5 HOH 32 2032 2032 HOH HOH B . O 5 HOH 33 2033 2033 HOH HOH B . O 5 HOH 34 2034 2034 HOH HOH B . O 5 HOH 35 2035 2035 HOH HOH B . O 5 HOH 36 2036 2036 HOH HOH B . O 5 HOH 37 2037 2037 HOH HOH B . O 5 HOH 38 2038 2038 HOH HOH B . O 5 HOH 39 2039 2039 HOH HOH B . O 5 HOH 40 2040 2040 HOH HOH B . O 5 HOH 41 2041 2041 HOH HOH B . O 5 HOH 42 2042 2042 HOH HOH B . O 5 HOH 43 2043 2043 HOH HOH B . O 5 HOH 44 2044 2044 HOH HOH B . O 5 HOH 45 2045 2045 HOH HOH B . O 5 HOH 46 2046 2046 HOH HOH B . O 5 HOH 47 2047 2047 HOH HOH B . O 5 HOH 48 2048 2048 HOH HOH B . O 5 HOH 49 2049 2049 HOH HOH B . O 5 HOH 50 2050 2050 HOH HOH B . O 5 HOH 51 2051 2051 HOH HOH B . O 5 HOH 52 2052 2052 HOH HOH B . O 5 HOH 53 2053 2053 HOH HOH B . O 5 HOH 54 2054 2054 HOH HOH B . O 5 HOH 55 2055 2055 HOH HOH B . O 5 HOH 56 2056 2056 HOH HOH B . O 5 HOH 57 2057 2057 HOH HOH B . O 5 HOH 58 2058 2058 HOH HOH B . O 5 HOH 59 2059 2059 HOH HOH B . O 5 HOH 60 2060 2060 HOH HOH B . O 5 HOH 61 2061 2061 HOH HOH B . O 5 HOH 62 2062 2062 HOH HOH B . O 5 HOH 63 2063 2063 HOH HOH B . O 5 HOH 64 2064 2064 HOH HOH B . O 5 HOH 65 2065 2065 HOH HOH B . O 5 HOH 66 2066 2066 HOH HOH B . O 5 HOH 67 2067 2067 HOH HOH B . O 5 HOH 68 2068 2068 HOH HOH B . O 5 HOH 69 2069 2069 HOH HOH B . O 5 HOH 70 2070 2070 HOH HOH B . O 5 HOH 71 2071 2071 HOH HOH B . O 5 HOH 72 2072 2072 HOH HOH B . O 5 HOH 73 2073 2073 HOH HOH B . O 5 HOH 74 2074 2074 HOH HOH B . O 5 HOH 75 2075 2075 HOH HOH B . O 5 HOH 76 2076 2076 HOH HOH B . O 5 HOH 77 2077 2077 HOH HOH B . O 5 HOH 78 2078 2078 HOH HOH B . O 5 HOH 79 2079 2079 HOH HOH B . O 5 HOH 80 2080 2080 HOH HOH B . O 5 HOH 81 2081 2081 HOH HOH B . O 5 HOH 82 2082 2082 HOH HOH B . O 5 HOH 83 2083 2083 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GDP 1 A GDP 1 ? G "GUANOSINE-5'-DIPHOSPHATE" 2 B OMC 6 B OMC 6 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4270 ? 1 MORE -79.2 ? 1 'SSA (A^2)' 10160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 1051 ? K MG . 2 1 A HOH 2029 ? N HOH . 3 1 A HOH 2046 ? N HOH . 4 1 A HOH 2136 ? N HOH . 5 1 B HOH 2012 ? O HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 16 ? A U 16 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 O2 ? A U 19 ? A U 19 ? 1_555 76.2 ? 2 O4 ? A U 16 ? A U 16 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 O ? N HOH . ? A HOH 2108 ? 2_454 83.3 ? 3 O2 ? A U 19 ? A U 19 ? 1_555 MG ? D MG . ? A MG 1044 ? 1_555 O ? N HOH . ? A HOH 2108 ? 2_454 68.7 ? 4 O4 ? A U 16 ? A U 16 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 OP2 ? A U 19 ? A U 19 ? 2_454 80.4 ? 5 O2 ? A U 19 ? A U 19 ? 1_555 MG ? D MG . ? A MG 1044 ? 1_555 OP2 ? A U 19 ? A U 19 ? 2_454 135.2 ? 6 O ? N HOH . ? A HOH 2108 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 OP2 ? A U 19 ? A U 19 ? 2_454 145.0 ? 7 O4 ? A U 16 ? A U 16 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 "O2'" ? A U 19 ? A U 19 ? 1_555 126.0 ? 8 O2 ? A U 19 ? A U 19 ? 1_555 MG ? D MG . ? A MG 1044 ? 1_555 "O2'" ? A U 19 ? A U 19 ? 1_555 85.1 ? 9 O ? N HOH . ? A HOH 2108 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 "O2'" ? A U 19 ? A U 19 ? 1_555 135.2 ? 10 OP2 ? A U 19 ? A U 19 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 "O2'" ? A U 19 ? A U 19 ? 1_555 78.5 ? 11 O4 ? A U 16 ? A U 16 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 O ? N HOH . ? A HOH 2217 ? 1_555 91.5 ? 12 O2 ? A U 19 ? A U 19 ? 1_555 MG ? D MG . ? A MG 1044 ? 1_555 O ? N HOH . ? A HOH 2217 ? 1_555 132.5 ? 13 O ? N HOH . ? A HOH 2108 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 O ? N HOH . ? A HOH 2217 ? 1_555 64.4 ? 14 OP2 ? A U 19 ? A U 19 ? 2_454 MG ? D MG . ? A MG 1044 ? 1_555 O ? N HOH . ? A HOH 2217 ? 1_555 85.2 ? 15 "O2'" ? A U 19 ? A U 19 ? 1_555 MG ? D MG . ? A MG 1044 ? 1_555 O ? N HOH . ? A HOH 2217 ? 1_555 134.8 ? 16 O ? N HOH . ? A HOH 2131 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 OP2 ? A A 21 ? A A 21 ? 1_555 83.2 ? 17 O ? N HOH . ? A HOH 2131 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2133 ? 1_555 84.5 ? 18 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2133 ? 1_555 77.3 ? 19 O ? N HOH . ? A HOH 2131 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 N7 ? A G 22 ? A G 22 ? 1_555 95.3 ? 20 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 N7 ? A G 22 ? A G 22 ? 1_555 108.6 ? 21 O ? N HOH . ? A HOH 2133 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 N7 ? A G 22 ? A G 22 ? 1_555 174.1 ? 22 O ? N HOH . ? A HOH 2131 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2132 ? 1_555 174.5 ? 23 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2132 ? 1_555 100.7 ? 24 O ? N HOH . ? A HOH 2133 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2132 ? 1_555 92.5 ? 25 N7 ? A G 22 ? A G 22 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2132 ? 1_555 87.1 ? 26 O ? N HOH . ? A HOH 2131 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2139 ? 1_555 84.8 ? 27 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2139 ? 1_555 155.2 ? 28 O ? N HOH . ? A HOH 2133 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2139 ? 1_555 80.0 ? 29 N7 ? A G 22 ? A G 22 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2139 ? 1_555 94.1 ? 30 O ? N HOH . ? A HOH 2132 ? 1_555 MG ? E MG . ? A MG 1045 ? 1_555 O ? N HOH . ? A HOH 2139 ? 1_555 90.1 ? 31 O ? N HOH . ? A HOH 2103 ? 2_454 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2107 ? 1_555 89.8 ? 32 O ? N HOH . ? A HOH 2103 ? 2_454 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2108 ? 1_555 90.6 ? 33 O ? N HOH . ? A HOH 2107 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2108 ? 1_555 96.8 ? 34 O ? N HOH . ? A HOH 2103 ? 2_454 MG ? F MG . ? A MG 1046 ? 1_555 O4 ? A U 16 ? A U 16 ? 1_555 170.0 ? 35 O ? N HOH . ? A HOH 2107 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O4 ? A U 16 ? A U 16 ? 1_555 98.1 ? 36 O ? N HOH . ? A HOH 2108 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O4 ? A U 16 ? A U 16 ? 1_555 94.5 ? 37 O ? N HOH . ? A HOH 2103 ? 2_454 MG ? F MG . ? A MG 1046 ? 1_555 O2 ? A U 19 ? A U 19 ? 2_454 95.2 ? 38 O ? N HOH . ? A HOH 2107 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O2 ? A U 19 ? A U 19 ? 2_454 171.9 ? 39 O ? N HOH . ? A HOH 2108 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O2 ? A U 19 ? A U 19 ? 2_454 76.8 ? 40 O4 ? A U 16 ? A U 16 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O2 ? A U 19 ? A U 19 ? 2_454 77.7 ? 41 O ? N HOH . ? A HOH 2103 ? 2_454 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2124 ? 2_454 70.9 ? 42 O ? N HOH . ? A HOH 2107 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2124 ? 2_454 96.6 ? 43 O ? N HOH . ? A HOH 2108 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2124 ? 2_454 157.0 ? 44 O4 ? A U 16 ? A U 16 ? 1_555 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2124 ? 2_454 101.9 ? 45 O2 ? A U 19 ? A U 19 ? 2_454 MG ? F MG . ? A MG 1046 ? 1_555 O ? N HOH . ? A HOH 2124 ? 2_454 91.1 ? 46 O6 ? A G 36 ? A G 36 ? 1_555 MG ? G MG . ? A MG 1047 ? 1_555 O ? N HOH . ? A HOH 2183 ? 1_555 97.1 ? 47 O6 ? A G 36 ? A G 36 ? 1_555 MG ? G MG . ? A MG 1047 ? 1_555 O ? N HOH . ? A HOH 2179 ? 1_555 94.9 ? 48 O ? N HOH . ? A HOH 2183 ? 1_555 MG ? G MG . ? A MG 1047 ? 1_555 O ? N HOH . ? A HOH 2179 ? 1_555 167.9 ? 49 O6 ? A G 36 ? A G 36 ? 1_555 MG ? G MG . ? A MG 1047 ? 1_555 O ? N HOH . ? A HOH 2174 ? 1_555 117.9 ? 50 O ? N HOH . ? A HOH 2183 ? 1_555 MG ? G MG . ? A MG 1047 ? 1_555 O ? N HOH . ? A HOH 2174 ? 1_555 94.8 ? 51 O ? N HOH . ? A HOH 2179 ? 1_555 MG ? G MG . ? A MG 1047 ? 1_555 O ? N HOH . ? A HOH 2174 ? 1_555 80.8 ? 52 O ? N HOH . ? A HOH 2073 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2162 ? 1_555 90.7 ? 53 O ? N HOH . ? A HOH 2073 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2072 ? 1_555 173.7 ? 54 O ? N HOH . ? A HOH 2162 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2072 ? 1_555 91.5 ? 55 O ? N HOH . ? A HOH 2073 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O2 ? A U 9 ? A U 9 ? 1_555 95.5 ? 56 O ? N HOH . ? A HOH 2162 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O2 ? A U 9 ? A U 9 ? 1_555 108.3 ? 57 O ? N HOH . ? A HOH 2072 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O2 ? A U 9 ? A U 9 ? 1_555 89.4 ? 58 O ? N HOH . ? A HOH 2073 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2155 ? 1_555 76.6 ? 59 O ? N HOH . ? A HOH 2162 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2155 ? 1_555 70.4 ? 60 O ? N HOH . ? A HOH 2072 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2155 ? 1_555 98.6 ? 61 O2 ? A U 9 ? A U 9 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2155 ? 1_555 171.9 ? 62 O ? N HOH . ? A HOH 2073 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2071 ? 1_555 112.3 ? 63 O ? N HOH . ? A HOH 2162 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2071 ? 1_555 140.9 ? 64 O ? N HOH . ? A HOH 2072 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2071 ? 1_555 62.8 ? 65 O2 ? A U 9 ? A U 9 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2071 ? 1_555 100.8 ? 66 O ? N HOH . ? A HOH 2155 ? 1_555 MG ? I MG . ? A MG 1049 ? 1_555 O ? N HOH . ? A HOH 2071 ? 1_555 84.1 ? 67 N7 ? A A 27 ? A A 27 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2145 ? 1_555 101.7 ? 68 N7 ? A A 27 ? A A 27 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2148 ? 1_555 89.3 ? 69 O ? N HOH . ? A HOH 2145 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2148 ? 1_555 96.4 ? 70 N7 ? A A 27 ? A A 27 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2150 ? 1_555 92.2 ? 71 O ? N HOH . ? A HOH 2145 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2150 ? 1_555 93.3 ? 72 O ? N HOH . ? A HOH 2148 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2150 ? 1_555 169.7 ? 73 N7 ? A A 27 ? A A 27 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2219 ? 1_555 172.8 ? 74 O ? N HOH . ? A HOH 2145 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2219 ? 1_555 78.7 ? 75 O ? N HOH . ? A HOH 2148 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2219 ? 1_555 83.5 ? 76 O ? N HOH . ? A HOH 2150 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2219 ? 1_555 94.9 ? 77 N7 ? A A 27 ? A A 27 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2060 ? 1_555 98.1 ? 78 O ? N HOH . ? A HOH 2145 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2060 ? 1_555 158.5 ? 79 O ? N HOH . ? A HOH 2148 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2060 ? 1_555 75.5 ? 80 O ? N HOH . ? A HOH 2150 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2060 ? 1_555 94.1 ? 81 O ? N HOH . ? A HOH 2219 ? 1_555 MG ? J MG . ? A MG 1050 ? 1_555 O ? N HOH . ? A HOH 2060 ? 1_555 80.6 ? 82 O ? N HOH . ? A HOH 2100 ? 1_555 MG ? K MG . ? A MG 1051 ? 1_555 O4 ? A U 19 ? A U 19 ? 1_555 88.4 ? 83 O ? N HOH . ? A HOH 2100 ? 1_555 MG ? K MG . ? A MG 1051 ? 1_555 O ? N HOH . ? A HOH 2100 ? 2_454 103.3 ? 84 O4 ? A U 19 ? A U 19 ? 1_555 MG ? K MG . ? A MG 1051 ? 1_555 O ? N HOH . ? A HOH 2100 ? 2_454 165.7 ? 85 O ? N HOH . ? A HOH 2100 ? 1_555 MG ? K MG . ? A MG 1051 ? 1_555 O4 ? A U 19 ? A U 19 ? 2_454 165.7 ? 86 O4 ? A U 19 ? A U 19 ? 1_555 MG ? K MG . ? A MG 1051 ? 1_555 O4 ? A U 19 ? A U 19 ? 2_454 81.4 ? 87 O ? N HOH . ? A HOH 2100 ? 2_454 MG ? K MG . ? A MG 1051 ? 1_555 O4 ? A U 19 ? A U 19 ? 2_454 88.4 ? 88 O ? O HOH . ? B HOH 2048 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? N HOH . ? A HOH 2164 ? 1_555 92.4 ? 89 O ? O HOH . ? B HOH 2048 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 N7 ? B G 10 ? B G 10 ? 1_555 93.1 ? 90 O ? N HOH . ? A HOH 2164 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 N7 ? B G 10 ? B G 10 ? 1_555 174.5 ? 91 O ? O HOH . ? B HOH 2048 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2042 ? 1_555 173.8 ? 92 O ? N HOH . ? A HOH 2164 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2042 ? 1_555 85.4 ? 93 N7 ? B G 10 ? B G 10 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2042 ? 1_555 89.2 ? 94 O ? O HOH . ? B HOH 2048 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2049 ? 1_555 88.4 ? 95 O ? N HOH . ? A HOH 2164 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2049 ? 1_555 87.0 ? 96 N7 ? B G 10 ? B G 10 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2049 ? 1_555 92.4 ? 97 O ? O HOH . ? B HOH 2042 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2049 ? 1_555 97.3 ? 98 O ? O HOH . ? B HOH 2048 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2040 ? 1_555 85.4 ? 99 O ? N HOH . ? A HOH 2164 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2040 ? 1_555 81.3 ? 100 N7 ? B G 10 ? B G 10 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2040 ? 1_555 99.8 ? 101 O ? O HOH . ? B HOH 2042 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2040 ? 1_555 88.5 ? 102 O ? O HOH . ? B HOH 2049 ? 1_555 MG ? L MG . ? B MG 1021 ? 1_555 O ? O HOH . ? B HOH 2040 ? 1_555 166.5 ? 103 O ? N HOH . ? A HOH 2161 ? 1_555 MG ? M MG . ? B MG 1022 ? 1_555 O ? O HOH . ? B HOH 2062 ? 1_555 79.0 ? 104 O ? N HOH . ? A HOH 2161 ? 1_555 MG ? M MG . ? B MG 1022 ? 1_555 O4 ? B U 13 ? B U 13 ? 1_555 81.3 ? 105 O ? O HOH . ? B HOH 2062 ? 1_555 MG ? M MG . ? B MG 1022 ? 1_555 O4 ? B U 13 ? B U 13 ? 1_555 50.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-12 2 'Structure model' 1 1 2013-03-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -9.6603 18.5440 11.1245 0.3676 0.3243 0.1809 0.0198 -0.0544 0.0285 5.4245 9.1684 4.0631 3.4646 -2.6623 -6.0070 0.1556 -0.4791 0.2864 -1.2389 0.2770 0.4947 1.3368 0.0067 -0.4638 'X-RAY DIFFRACTION' 2 ? refined -11.5998 7.2453 -8.8095 0.1930 0.1716 0.2770 -0.0320 0.0874 -0.0339 1.7253 9.0061 5.2507 1.0086 1.7149 6.5516 -0.0226 0.0426 -0.4251 -0.7061 0.4241 -0.9925 -0.4117 0.1894 -0.3743 'X-RAY DIFFRACTION' 3 ? refined -18.9888 9.9090 -21.8283 0.1793 0.1857 0.0873 0.0235 -0.0348 0.0003 4.3619 3.5572 6.1048 -0.7172 -1.3867 2.9700 -0.1404 -0.2157 -0.0769 -0.1410 0.1911 -0.2550 -0.6172 0.0096 -0.0642 'X-RAY DIFFRACTION' 4 ? refined -18.3637 15.6746 0.0927 0.3736 0.4201 0.2051 -0.0030 0.0309 -0.0138 7.4695 6.7087 7.6911 -3.0691 -3.2116 2.3778 -0.3455 -1.1195 -0.3236 0.6982 0.2552 0.4712 -0.2277 -0.5675 0.1553 'X-RAY DIFFRACTION' 5 ? refined -23.5969 13.5869 -9.7324 0.3244 0.4855 0.2357 0.1078 -0.0684 -0.1019 5.9990 6.5773 7.3413 -5.5012 6.5182 -6.5423 -0.0982 -0.6849 -0.4026 -0.0467 0.4973 0.2327 -0.3817 -1.3081 -0.5039 'X-RAY DIFFRACTION' 6 ? refined -24.7730 16.7800 -25.3333 0.4718 0.3929 0.1839 0.1888 -0.0869 0.0111 4.9401 5.0917 0.1099 -1.0711 0.5428 -0.6310 -0.1928 0.3450 0.5548 -0.2725 0.0913 -0.2316 -1.2628 -1.0426 0.1902 'X-RAY DIFFRACTION' 7 ? refined -32.7725 7.1524 -32.8640 0.1972 0.3131 0.1174 -0.0044 -0.0255 -0.0328 7.5027 8.1401 4.0493 -3.9563 1.8824 -1.5251 0.0297 0.4797 -0.5730 -0.1793 0.1883 0.3415 0.0952 0.3913 -0.2839 'X-RAY DIFFRACTION' 8 ? refined -31.2809 12.3289 -25.3199 0.1734 0.3373 0.1094 0.0384 -0.0353 -0.0124 3.5344 1.3488 0.5421 -1.5847 1.3997 -0.5432 -0.1293 -0.4489 0.2805 0.1137 0.0995 0.0478 -0.0052 0.2211 0.1781 'X-RAY DIFFRACTION' 9 ? refined -15.0207 2.4315 -3.8959 0.3199 0.1614 0.1907 0.0148 -0.0248 0.0348 3.9066 8.9253 6.7280 2.4069 2.3117 4.1672 0.1370 -0.3018 -0.1944 0.9621 0.0263 -0.5671 -0.1952 -0.0377 -0.0870 'X-RAY DIFFRACTION' 10 ? refined -0.3574 21.9904 9.3570 0.4204 0.3598 0.8098 0.0459 0.1077 0.1380 2.5775 9.4299 2.0354 -3.3029 -4.0101 8.8311 0.4283 -0.3127 -0.1595 -0.2144 0.4406 -2.4697 0.6209 0.3306 -0.6162 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 1:4)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 5:14)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 15:25)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 26:30)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 31:34)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 35:38)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 39:43)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 1:7)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 8:15)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 16:20)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 iMOSFLM 'data scaling' . ? 2 PHASER phasing . ? 3 # _pdbx_entry_details.entry_id 3ZD3 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;UNX: A1000 WAS REFINED ASSUMING 10 ELECTRONS. ITS IDENTITY, WATER OR MG++, COULD NOT BE DETERMINED ; _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2053 ? ? O A HOH 2057 ? ? 1.84 2 1 O A HOH 2038 ? ? O A HOH 2180 ? ? 2.00 3 1 "O2'" B C 14 ? ? O B HOH 2066 ? ? 2.05 4 1 O A HOH 2075 ? ? O B HOH 2050 ? ? 2.05 5 1 "O3'" A C 43 ? ? O A HOH 2213 ? ? 2.05 6 1 O B HOH 2027 ? ? O B HOH 2028 ? ? 2.07 7 1 O A HOH 2123 ? ? O A HOH 2126 ? ? 2.07 8 1 O A HOH 2119 ? ? O A HOH 2120 ? ? 2.07 9 1 O A HOH 2011 ? ? O B HOH 2056 ? ? 2.10 10 1 O A HOH 2034 ? ? O A HOH 2035 ? ? 2.10 11 1 "O3'" A U 30 ? ? O A HOH 2158 ? ? 2.10 12 1 O A HOH 2188 ? ? O A HOH 2196 ? ? 2.12 13 1 O B HOH 2016 ? ? O B HOH 2020 ? ? 2.13 14 1 OP2 A A 38 ? ? O A HOH 2190 ? ? 2.14 15 1 O A HOH 2066 ? ? O A HOH 2158 ? ? 2.15 16 1 O A HOH 2027 ? ? O A HOH 2121 ? ? 2.15 17 1 O A HOH 2014 ? ? O A HOH 2089 ? ? 2.15 18 1 O A HOH 2039 ? ? O B HOH 2013 ? ? 2.15 19 1 "O2'" A A 34 ? ? O A HOH 2177 ? ? 2.15 20 1 O A HOH 2160 ? ? O B HOH 2062 ? ? 2.16 21 1 O A HOH 2185 ? ? O A HOH 2190 ? ? 2.17 22 1 O B HOH 2015 ? ? O B HOH 2016 ? ? 2.18 23 1 O A HOH 2170 ? ? O A HOH 2218 ? ? 2.18 24 1 O A HOH 2037 ? ? O A HOH 2175 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 20 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 20 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 20 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 111.70 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 3.40 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3ZD3 'double helix' 3ZD3 'a-form double helix' 3ZD3 'hairpin loop' 3ZD3 'mismatched base pair' 3ZD3 'triple helix' 3ZD3 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GDP 1 1_555 B DC 20 1_555 -0.166 -0.108 0.001 -6.561 0.000 0.994 1 A_GDP1:DC20_B A 1 ? B 20 ? 19 1 1 A G 2 1_555 B C 19 1_555 -0.227 -0.066 0.055 -10.773 0.000 1.074 2 A_G2:C19_B A 2 ? B 19 ? 19 1 1 A A 3 1_555 B U 18 1_555 0.115 -0.023 -0.056 -12.475 0.000 2.530 3 A_A3:U18_B A 3 ? B 18 ? 20 1 1 A U 4 1_555 B C 15 1_555 -1.080 -0.215 -1.057 -7.930 0.000 -32.015 4 A_U4:C15_B A 4 ? B 15 ? ? ? 1 A G 5 1_555 B C 14 1_555 0.090 -0.127 0.199 -0.206 0.000 -3.028 5 A_G5:C14_B A 5 ? B 14 ? 19 1 1 A U 6 1_555 A A 28 1_555 4.205 -2.202 -0.143 -11.320 0.000 -92.972 6 A_U6:A28_A A 6 ? A 28 ? 24 4 1 A A 31 1_555 B U 13 1_555 -4.321 -2.089 -0.243 -11.376 0.000 -97.687 7 A_A31:U13_B A 31 ? B 13 ? 24 4 1 A U 9 1_555 B A 12 1_555 -0.241 -0.047 0.304 9.075 0.000 1.024 8 A_U9:A12_B A 9 ? B 12 ? 20 1 1 A A 10 1_555 B U 11 1_555 0.064 -0.103 0.151 11.188 0.000 4.456 9 A_A10:U11_B A 10 ? B 11 ? 20 1 1 A C 11 1_555 B G 10 1_555 0.173 -0.073 -0.291 10.781 0.000 3.758 10 A_C11:G10_B A 11 ? B 10 ? 19 1 1 A C 12 1_555 B G 9 1_555 0.207 -0.104 0.032 -6.828 0.000 1.754 11 A_C12:G9_B A 12 ? B 9 ? 19 1 1 A A 13 1_555 B U 8 1_555 0.039 -0.104 -0.056 -13.605 0.000 0.987 12 A_A13:U8_B A 13 ? B 8 ? 20 1 1 A G 14 1_555 B C 7 1_555 -0.042 -0.184 0.488 -3.932 0.000 -0.387 13 A_G14:C7_B A 14 ? B 7 ? 19 1 1 A C 15 1_555 A G 20 1_555 0.221 -0.183 0.250 12.469 0.000 -2.427 14 A_C15:G20_A A 15 ? A 20 ? 19 1 1 A C 8 1_555 A C 26 1_555 1.957 1.485 -0.033 10.112 0.000 178.981 15 A_C8:C26_A A 8 ? A 26 ? 15 2 1 A G 32 1_555 A C 25 1_555 -0.116 -0.122 0.121 -0.840 0.000 -4.881 16 A_G32:C25_A A 32 ? A 25 ? 19 1 1 A G 33 1_555 A C 24 1_555 -0.323 -0.089 -0.040 -3.970 0.000 1.116 17 A_G33:C24_A A 33 ? A 24 ? 19 1 1 A A 34 1_555 A U 23 1_555 0.119 0.009 -0.025 2.553 0.000 -5.341 18 A_A34:U23_A A 34 ? A 23 ? 20 1 1 A C 35 1_555 A G 22 1_555 0.403 -0.149 -0.149 -0.182 0.000 1.170 19 A_C35:G22_A A 35 ? A 22 ? 19 1 1 A G 36 1_555 A A 21 1_555 6.888 -4.141 0.304 -1.033 0.000 -2.378 20 A_G36:A21_A A 36 ? A 21 ? 11 10 1 A A 37 1_555 B OMC 6 1_555 -5.925 -2.615 -1.010 -23.224 0.000 -49.002 21 A_A37:OMC6_B A 37 ? B 6 ? ? ? 1 A A 38 1_555 A G 17 1_555 -3.963 3.631 0.205 40.431 0.000 82.141 22 A_A38:G17_A A 38 ? A 17 ? ? ? 1 A A 39 1_555 B U 5 1_555 0.056 -0.049 0.552 9.504 0.000 0.105 23 A_A39:U5_B A 39 ? B 5 ? 20 1 1 A C 40 1_555 B G 4 1_555 0.290 -0.132 -0.119 9.512 0.000 0.570 24 A_C40:G4_B A 40 ? B 4 ? 19 1 1 A G 41 1_555 B C 3 1_555 -0.350 -0.191 0.064 -2.915 0.000 0.895 25 A_G41:C3_B A 41 ? B 3 ? 19 1 1 A C 42 1_555 B G 2 1_555 0.254 -0.103 0.238 -9.893 0.000 0.482 26 A_C42:G2_B A 42 ? B 2 ? 19 1 1 A C 43 1_555 B G 1 1_555 0.186 -0.095 -0.006 4.063 0.000 -0.934 27 A_C43:G1_B A 43 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GDP 1 1_555 B DC 20 1_555 A G 2 1_555 B C 19 1_555 -0.111 -2.223 3.359 2.657 3.998 29.941 -5.043 0.738 3.022 7.677 -5.101 30.314 1 AA_GDP1G2:C19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A G 2 1_555 B C 19 1_555 A A 3 1_555 B U 18 1_555 -0.250 -1.287 3.362 1.420 5.317 34.358 -2.962 0.634 3.121 8.930 -2.385 34.783 2 AA_G2A3:U18C19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A A 3 1_555 B U 18 1_555 A U 4 1_555 B C 15 1_555 3.364 -0.896 4.035 -3.238 11.784 65.340 -1.380 -3.228 3.693 10.817 2.972 66.348 3 AA_A3U4:C15U18_BB A 3 ? B 18 ? A 4 ? B 15 ? 1 A U 4 1_555 B C 15 1_555 A G 5 1_555 B C 14 1_555 1.500 -1.524 3.287 -10.756 15.789 34.148 -3.905 -3.353 1.891 24.643 16.789 38.990 4 AA_U4G5:C14C15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A G 5 1_555 B C 14 1_555 A U 6 1_555 A A 28 1_555 -2.481 -2.137 3.528 3.897 0.706 80.887 -1.665 2.017 3.411 0.544 -3.002 80.967 5 AA_G5U6:A28C14_AB A 5 ? B 14 ? A 6 ? A 28 ? 1 A U 6 1_555 A A 28 1_555 A A 31 1_555 B U 13 1_555 3.453 -3.495 5.210 42.938 -67.556 -151.929 2.107 1.966 4.382 34.501 21.929 -158.594 6 AA_U6A31:U13A28_BA A 6 ? A 28 ? A 31 ? B 13 ? 1 A A 31 1_555 B U 13 1_555 A U 9 1_555 B A 12 1_555 1.468 -1.431 2.909 -13.249 4.839 77.667 -1.241 -1.466 2.594 3.829 10.484 78.738 7 AA_A31U9:A12U13_BB A 31 ? B 13 ? A 9 ? B 12 ? 1 A U 9 1_555 B A 12 1_555 A A 10 1_555 B U 11 1_555 -0.286 -1.382 3.030 -1.420 11.625 33.392 -3.757 0.290 2.438 19.500 2.382 35.331 8 AA_U9A10:U11A12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 A A 10 1_555 B U 11 1_555 A C 11 1_555 B G 10 1_555 0.279 -1.391 3.168 3.371 6.143 34.520 -3.156 0.008 2.899 10.222 -5.609 35.203 9 AA_A10C11:G10U11_BB A 10 ? B 11 ? A 11 ? B 10 ? 1 A C 11 1_555 B G 10 1_555 A C 12 1_555 B G 9 1_555 -0.915 -2.030 3.574 -5.013 14.693 29.866 -5.872 0.779 2.454 26.384 9.002 33.578 10 AA_C11C12:G9G10_BB A 11 ? B 10 ? A 12 ? B 9 ? 1 A C 12 1_555 B G 9 1_555 A A 13 1_555 B U 8 1_555 -0.031 -1.200 3.290 1.773 16.174 34.035 -3.818 0.263 2.485 25.878 -2.836 37.621 11 AA_C12A13:U8G9_BB A 12 ? B 9 ? A 13 ? B 8 ? 1 A A 13 1_555 B U 8 1_555 A G 14 1_555 B C 7 1_555 0.995 -1.455 3.110 2.503 13.173 27.055 -5.127 -1.471 2.256 26.213 -4.980 30.140 12 AA_A13G14:C7U8_BB A 13 ? B 8 ? A 14 ? B 7 ? 1 A G 14 1_555 B C 7 1_555 A C 15 1_555 A G 20 1_555 -1.361 -0.895 2.945 3.510 9.222 25.174 -3.857 3.654 2.274 20.197 -7.687 27.010 13 AA_G14C15:G20C7_AB A 14 ? B 7 ? A 15 ? A 20 ? 1 A C 8 1_555 A C 26 1_555 A G 32 1_555 A C 25 1_555 -2.388 -2.262 0.576 86.163 -155.825 79.091 -0.806 1.374 1.002 -78.221 -43.252 178.504 14 AA_C8G32:C25C26_AA A 8 ? A 26 ? A 32 ? A 25 ? 1 A G 32 1_555 A C 25 1_555 A G 33 1_555 A C 24 1_555 0.498 -1.947 3.261 3.199 5.759 32.515 -4.335 -0.360 2.917 10.155 -5.642 33.158 15 AA_G32G33:C24C25_AA A 32 ? A 25 ? A 33 ? A 24 ? 1 A G 33 1_555 A C 24 1_555 A A 34 1_555 A U 23 1_555 -1.066 -1.915 3.080 -1.980 6.919 29.856 -4.825 1.669 2.643 13.188 3.773 30.692 16 AA_G33A34:U23C24_AA A 33 ? A 24 ? A 34 ? A 23 ? 1 A A 34 1_555 A U 23 1_555 A C 35 1_555 A G 22 1_555 0.950 -1.563 3.237 2.871 9.914 33.730 -3.963 -1.170 2.751 16.609 -4.809 35.230 17 AA_A34C35:G22U23_AA A 34 ? A 23 ? A 35 ? A 22 ? 1 A C 35 1_555 A G 22 1_555 A G 36 1_555 A A 21 1_555 -0.112 -0.825 3.536 1.855 7.189 62.077 -1.144 0.198 3.427 6.944 -1.791 62.475 18 AA_C35G36:A21G22_AA A 35 ? A 22 ? A 36 ? A 21 ? 1 A G 36 1_555 A A 21 1_555 A A 37 1_555 B OMC 6 1_555 -0.362 -0.993 3.970 10.634 4.382 15.082 -5.623 7.422 2.735 14.287 -34.673 18.947 19 AA_G36A37:OMC6A21_BA A 36 ? A 21 ? A 37 ? B 6 ? 1 A A 37 1_555 B OMC 6 1_555 A A 38 1_555 A G 17 1_555 1.042 -3.943 1.836 -27.743 34.494 -16.647 0.947 -1.901 4.138 -54.865 -44.126 -47.145 20 AA_A37A38:G17OMC6_AB A 37 ? B 6 ? A 38 ? A 17 ? 1 A A 38 1_555 A G 17 1_555 A A 39 1_555 B U 5 1_555 0.938 2.497 3.343 0.036 -21.956 84.770 2.271 -0.680 2.763 -16.053 -0.027 87.043 21 AA_A38A39:U5G17_BA A 38 ? A 17 ? A 39 ? B 5 ? 1 A A 39 1_555 B U 5 1_555 A C 40 1_555 B G 4 1_555 -0.395 -1.121 3.372 3.526 14.468 31.189 -4.039 1.190 2.560 25.190 -6.139 34.482 22 AA_A39C40:G4U5_BB A 39 ? B 5 ? A 40 ? B 4 ? 1 A C 40 1_555 B G 4 1_555 A G 41 1_555 B C 3 1_555 0.082 -1.481 3.414 -2.960 18.085 32.246 -4.614 -0.502 2.279 29.754 4.870 36.969 23 AA_C40G41:C3G4_BB A 40 ? B 4 ? A 41 ? B 3 ? 1 A G 41 1_555 B C 3 1_555 A C 42 1_555 B G 2 1_555 0.214 -1.465 3.427 1.174 9.428 36.401 -3.497 -0.181 2.975 14.785 -1.841 37.580 24 AA_G41C42:G2C3_BB A 41 ? B 3 ? A 42 ? B 2 ? 1 A C 42 1_555 B G 2 1_555 A C 43 1_555 B G 1 1_555 1.155 -2.131 2.878 6.610 6.041 23.419 -6.432 -1.000 2.487 14.233 -15.573 25.051 25 AA_C42C43:G1G2_BB A 42 ? B 2 ? A 43 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 'MAGNESIUM ION' MG 5 water HOH #