HEADER HYDROLASE 28-NOV-12 3ZDK OBSLTE 18-FEB-15 3ZDK 5AHO TITLE CRYSTAL STRUCTURE OF HUMAN 5' EXONUCLEASE APOLLO COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5' EXONUCLEASE APOLLO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA CROSS-LINK REPAIR 1B PROTEIN, SNM1 HOMOLOG B, SNMIB, COMPND 5 HSNM1B; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PFB-LIC-BSE KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.K.ALLERSTON,M.VOLLMAR,T.KROJER,A.C.W.PIKE,E.CARPENTER,A.QUIGLEY, AUTHOR 2 P.MAHAJAN,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,O.GILEADI REVDAT 2 18-FEB-15 3ZDK 1 OBSLTE REVDAT 1 16-JAN-13 3ZDK 0 JRNL AUTH C.K.ALLERSTON,M.VOLLMAR,T.KROJER,A.C.W.PIKE,E.CARPENTER, JRNL AUTH 2 A.QUIGLEY,P.MAHAJAN,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH, JRNL AUTH 3 A.EDWARDS,O.GILEADI JRNL TITL CRYSTAL STRUCTURE OF HUMAN 5' EXONUCLEASE APOLLO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.94 REMARK 3 NUMBER OF REFLECTIONS : 26072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17218 REMARK 3 R VALUE (WORKING SET) : 0.17029 REMARK 3 FREE R VALUE : 0.20861 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1362 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.160 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.216 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1892 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.276 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.287 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2445 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.771 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00 REMARK 3 B22 (A**2) : 0.00 REMARK 3 B33 (A**2) : 0.00 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2549 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2401 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3471 ; 1.556 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5507 ; 0.783 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;30.742 ;23.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;12.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;23.055 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2840 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 591 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1257 ; 4.066 ; 5.604 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1256 ; 4.028 ; 5.597 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 5.499 ;10.474 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 5.437 ; 6.252 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 91.6429 66.3998 36.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.0369 REMARK 3 T33: 0.0321 T12: 0.0250 REMARK 3 T13: -0.0126 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.7811 L22: 0.6336 REMARK 3 L33: 0.4574 L12: -0.2070 REMARK 3 L13: 0.5962 L23: -0.1396 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: -0.0219 S13: 0.0981 REMARK 3 S21: 0.0598 S22: -0.0412 S23: 0.0346 REMARK 3 S31: -0.0138 S32: -0.0109 S33: 0.0718 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 3ZDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-12. REMARK 100 THE PDBE ID CODE IS EBI-54935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.16 REMARK 200 RESOLUTION RANGE LOW (A) : 71.55 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.9 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.4 REMARK 200 R MERGE (I) : 0.22 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.8 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B87 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M K/NA(TART) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.54600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.54600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.54600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.54600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 71.54600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 71.54600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 71.54600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 71.54600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 71.54600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 71.54600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 71.54600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 71.54600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 107.31900 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.77300 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 107.31900 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 107.31900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 35.77300 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 107.31900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.77300 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 35.77300 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 35.77300 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 35.77300 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 107.31900 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 35.77300 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 107.31900 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 107.31900 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 35.77300 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 107.31900 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 107.31900 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 35.77300 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 35.77300 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 35.77300 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 35.77300 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 107.31900 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 107.31900 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 107.31900 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 107.31900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 314 REMARK 465 SER A 315 REMARK 465 VAL A 316 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 ILE A 319 REMARK 465 PRO A 320 REMARK 465 ASP A 321 REMARK 465 SER A 322 REMARK 465 VAL A 323 REMARK 465 GLN A 324 REMARK 465 GLN A 325 REMARK 465 TYR A 326 REMARK 465 MET A 327 REMARK 465 SER A 328 REMARK 465 SER A 329 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 ARG A 332 REMARK 465 LYS A 333 REMARK 465 PRO A 334 REMARK 465 SER A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 ARG A 60 NE CZ NH1 NH2 REMARK 470 LYS A 66 CD CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 171 CE NZ REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 LEU A 213 CD1 CD2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 SER A 263 OG REMARK 470 SER A 264 OG REMARK 470 LYS A 290 CD CE NZ REMARK 470 SER A 299 OG REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 307 CD OE1 NE2 REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 236 O HOH A 2194 2.16 REMARK 500 O HOH A 2056 O HOH A 2058 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 34.19 -96.86 REMARK 500 ALA A 24 42.93 -104.31 REMARK 500 ALA A 45 38.05 -144.33 REMARK 500 ASP A 145 92.55 -65.67 REMARK 500 ALA A 217 156.55 -47.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1322 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A1324 O2 REMARK 620 2 HIS A 36 NE2 158.5 REMARK 620 3 ASP A 120 OD2 87.7 88.5 REMARK 620 4 HOH A2008 O 107.3 94.2 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1323 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 31 NE2 REMARK 620 2 HIS A 33 ND1 89.2 REMARK 620 3 ASP A 120 OD2 88.0 171.9 REMARK 620 4 SO4 A1324 S 154.1 93.3 86.0 REMARK 620 5 SO4 A1324 O4 123.1 83.2 92.1 32.3 REMARK 620 6 HIS A 99 NE2 95.8 97.7 90.1 109.3 141.1 REMARK 620 7 SO4 A1324 O1 174.6 92.9 90.6 30.7 62.1 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1324 DBREF 3ZDK A 1 335 UNP Q9H816 DCR1B_HUMAN 1 335 SEQADV 3ZDK SER A 0 UNP Q9H816 EXPRESSION TAG SEQRES 1 A 336 SER MET ASN GLY VAL LEU ILE PRO HIS THR PRO ILE ALA SEQRES 2 A 336 VAL ASP PHE TRP SER LEU ARG ARG ALA GLY THR ALA ARG SEQRES 3 A 336 LEU PHE PHE LEU SER HIS MET HIS SER ASP HIS THR VAL SEQRES 4 A 336 GLY LEU SER SER THR TRP ALA ARG PRO LEU TYR CYS SER SEQRES 5 A 336 PRO ILE THR ALA HIS LEU LEU HIS ARG HIS LEU GLN VAL SEQRES 6 A 336 SER LYS GLN TRP ILE GLN ALA LEU GLU VAL GLY GLU SER SEQRES 7 A 336 HIS VAL LEU PRO LEU ASP GLU ILE GLY GLN GLU THR MET SEQRES 8 A 336 THR VAL THR LEU LEU ASP ALA ASN HIS CYS PRO GLY SER SEQRES 9 A 336 VAL MET PHE LEU PHE GLU GLY TYR PHE GLY THR ILE LEU SEQRES 10 A 336 TYR THR GLY ASP PHE ARG TYR THR PRO SER MET LEU LYS SEQRES 11 A 336 GLU PRO ALA LEU THR LEU GLY LYS GLN ILE HIS THR LEU SEQRES 12 A 336 TYR LEU ASP ASN THR ASN CYS ASN PRO ALA LEU VAL LEU SEQRES 13 A 336 PRO SER ARG GLN GLU ALA ALA HIS GLN ILE VAL GLN LEU SEQRES 14 A 336 ILE ARG LYS HIS PRO GLN HIS ASN ILE LYS ILE GLY LEU SEQRES 15 A 336 TYR SER LEU GLY LYS GLU SER LEU LEU GLU GLN LEU ALA SEQRES 16 A 336 LEU GLU PHE GLN THR TRP VAL VAL LEU SER PRO ARG ARG SEQRES 17 A 336 LEU GLU LEU VAL GLN LEU LEU GLY LEU ALA ASP VAL PHE SEQRES 18 A 336 THR VAL GLU GLU LYS ALA GLY ARG ILE HIS ALA VAL ASP SEQRES 19 A 336 HIS MET GLU ILE CYS HIS SER ASN MET LEU ARG TRP ASN SEQRES 20 A 336 GLN THR HIS PRO THR ILE ALA ILE LEU PRO THR SER ARG SEQRES 21 A 336 LYS ILE HIS SER SER HIS PRO ASP ILE HIS VAL ILE PRO SEQRES 22 A 336 TYR SER ASP HIS SER SER TYR SER GLU LEU ARG ALA PHE SEQRES 23 A 336 VAL ALA ALA LEU LYS PRO CYS GLN VAL VAL PRO ILE VAL SEQRES 24 A 336 SER ARG ARG PRO CYS GLY GLY PHE GLN ASP SER LEU SER SEQRES 25 A 336 PRO ARG ILE SER VAL PRO LEU ILE PRO ASP SER VAL GLN SEQRES 26 A 336 GLN TYR MET SER SER SER SER ARG LYS PRO SER HET EDO A1314 4 HET EDO A1315 4 HET EDO A1316 4 HET EDO A1317 4 HET EDO A1318 4 HET EDO A1319 4 HET EDO A1320 4 HET TLA A1321 10 HET ZN A1322 1 HET ZN A1323 1 HET SO4 A1324 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM TLA L(+)-TARTARIC ACID HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 7(C2 H6 O2) FORMUL 3 TLA C4 H6 O6 FORMUL 4 SO4 O4 S 2- FORMUL 5 ZN 2(ZN 2+) FORMUL 6 HOH *240(H2 O) HELIX 1 1 SER A 17 GLY A 22 1 6 HELIX 2 2 HIS A 33 THR A 37 5 5 HELIX 3 3 SER A 51 GLN A 63 1 13 HELIX 4 4 THR A 124 GLU A 130 5 7 HELIX 5 5 GLU A 130 THR A 134 5 5 HELIX 6 6 SER A 157 LYS A 171 1 15 HELIX 7 7 LYS A 186 GLN A 198 1 13 HELIX 8 8 SER A 204 LEU A 214 1 11 HELIX 9 9 GLU A 223 GLY A 227 5 5 HELIX 10 10 MET A 235 ILE A 237 5 3 HELIX 11 11 CYS A 238 HIS A 249 1 12 HELIX 12 12 SER A 278 LYS A 290 1 13 HELIX 13 13 PHE A 306 LEU A 310 5 5 SHEET 1 AA 5 VAL A 4 LEU A 5 0 SHEET 2 AA 5 ILE A 11 VAL A 13 -1 O VAL A 13 N VAL A 4 SHEET 3 AA 5 LEU A 26 PHE A 28 1 O LEU A 26 N ALA A 12 SHEET 4 AA 5 LEU A 48 CYS A 50 1 N TYR A 49 O PHE A 27 SHEET 5 AA 5 ILE A 69 ALA A 71 1 O GLN A 70 N CYS A 50 SHEET 1 AB 6 SER A 77 PRO A 81 0 SHEET 2 AB 6 THR A 89 ASP A 96 -1 O MET A 90 N LEU A 80 SHEET 3 AB 6 VAL A 104 GLY A 110 -1 O MET A 105 N LEU A 95 SHEET 4 AB 6 GLY A 113 TYR A 117 -1 O GLY A 113 N GLY A 110 SHEET 5 AB 6 THR A 141 LEU A 144 1 O THR A 141 N LEU A 116 SHEET 6 AB 6 VAL A 294 PRO A 296 1 O VAL A 295 N LEU A 144 SHEET 1 AC 6 PHE A 220 THR A 221 0 SHEET 2 AC 6 VAL A 201 VAL A 202 1 O VAL A 201 N THR A 221 SHEET 3 AC 6 ILE A 229 ASP A 233 1 O ILE A 229 N VAL A 202 SHEET 4 AC 6 ASN A 176 LEU A 181 1 O ILE A 177 N HIS A 230 SHEET 5 AC 6 THR A 251 PRO A 256 1 O ILE A 252 N LYS A 178 SHEET 6 AC 6 ILE A 268 ILE A 271 1 O HIS A 269 N LEU A 255 LINK ZN ZN A1322 NE2 HIS A 36 1555 1555 2.41 LINK ZN ZN A1322 OD2 ASP A 120 1555 1555 2.41 LINK ZN ZN A1322 O HOH A2008 1555 1555 2.31 LINK ZN ZN A1323 NE2 HIS A 99 1555 1555 2.23 LINK ZN ZN A1323 NE2 HIS A 31 1555 1555 2.17 LINK ZN ZN A1323 OD2 ASP A 120 1555 1555 2.18 LINK ZN ZN A1323 ND1 HIS A 33 1555 1555 2.20 LINK O4 SO4 A1324 ZN ZN A1323 1555 1555 2.52 LINK O2 SO4 A1324 ZN ZN A1322 1555 1555 2.64 LINK O1 SO4 A1324 ZN ZN A1323 1555 1555 2.18 LINK S SO4 A1324 ZN ZN A1323 1555 1555 2.85 SITE 1 AC1 5 ASN A 176 LYS A 178 GLU A 224 TRP A 245 SITE 2 AC1 5 THR A 251 SITE 1 AC2 5 LEU A 133 LYS A 137 LEU A 289 HOH A2135 SITE 2 AC2 5 HOH A2136 SITE 1 AC3 5 ASP A 96 GLY A 102 SER A 103 HOH A2072 SITE 2 AC3 5 HOH A2124 SITE 1 AC4 5 THR A 89 MET A 90 THR A 91 GLU A 109 SITE 2 AC4 5 HOH A2111 SITE 1 AC5 6 CYS A 303 GLY A 304 GLY A 305 PHE A 306 SITE 2 AC5 6 GLN A 307 HOH A2234 SITE 1 AC6 4 GLY A 180 LYS A 186 PRO A 256 TLA A1321 SITE 1 AC7 7 GLY A 39 SER A 41 THR A 43 ILE A 85 SITE 2 AC7 7 GLY A 86 GLN A 87 HOH A2063 SITE 1 AC8 12 TYR A 182 LYS A 186 THR A 257 SER A 258 SITE 2 AC8 12 ARG A 259 SER A 274 ASP A 275 HIS A 276 SITE 3 AC8 12 EDO A1319 SO4 A1324 HOH A2173 HOH A2180 SITE 1 AC9 6 ASP A 35 HIS A 36 ASP A 120 ZN A1323 SITE 2 AC9 6 SO4 A1324 HOH A2008 SITE 1 BC1 6 HIS A 31 HIS A 33 HIS A 99 ASP A 120 SITE 2 BC1 6 ZN A1322 SO4 A1324 SITE 1 BC2 10 HIS A 33 ASP A 35 HIS A 99 ASP A 120 SITE 2 BC2 10 TYR A 182 HIS A 276 TLA A1321 ZN A1322 SITE 3 BC2 10 ZN A1323 HOH A2180 CRYST1 143.092 143.092 143.092 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006989 0.00000