data_3ZDU
#
_entry.id 3ZDU
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3ZDU pdb_00003zdu 10.2210/pdb3zdu/pdb
PDBE EBI-54956 ? ?
WWPDB D_1290054956 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3ZDU
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2012-11-30
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Canning, P.' 1 ?
'Elkins, J.M.' 2 ?
'Goubin, S.' 3 ?
'Mahajan, P.' 4 ?
'Pike, A.C.W.' 5 ?
'Quigley, A.' 6 ?
'MacKenzie, A.' 7 ?
'Carpenter, E.P.' 8 ?
'von Delft, F.' 9 ?
'Arrowsmith, C.H.' 10 ?
'Edwards, A.M.' 11 ?
'Bountra, C.' 12 ?
'Bullock, A.' 13 ?
#
_citation.id primary
_citation.title 'CDKL Family Kinases Have Evolved Distinct Structural Features and Ciliary Function.'
_citation.journal_abbrev 'Cell Rep'
_citation.journal_volume 22
_citation.page_first 885
_citation.page_last 894
_citation.year 2018
_citation.journal_id_ASTM ?
_citation.country US
_citation.journal_id_ISSN 2211-1247
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 29420175
_citation.pdbx_database_id_DOI 10.1016/j.celrep.2017.12.083
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Canning, P.' 1 ?
primary 'Park, K.' 2 ?
primary 'Goncalves, J.' 3 ?
primary 'Li, C.' 4 ?
primary 'Howard, C.J.' 5 ?
primary 'Sharpe, T.D.' 6 ?
primary 'Holt, L.J.' 7 ?
primary 'Pelletier, L.' 8 ?
primary 'Bullock, A.N.' 9 ?
primary 'Leroux, M.R.' 10 ?
#
_cell.entry_id 3ZDU
_cell.length_a 63.930
_cell.length_b 63.930
_cell.length_c 163.630
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 3ZDU
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'CYCLIN-DEPENDENT KINASE-LIKE 3' 37351.379 1 2.7.11.22
YES 'KINASE DOMAIN, RESIDUES 1-324' 'TWO PHOSPHOMIMETIC POINT MUTATIONS INTRODUCED, T158D AND Y160E'
2 non-polymer syn '[4-({4-[(3-cyclopentyl-1H-pyrazol-5-yl)amino]pyrimidin-2-yl}amino)phenyl]acetonitrile' 359.428 1 ?
? ? ?
3 non-polymer syn 'ZINC ION' 65.409 2 ?
? ? ?
4 non-polymer syn 'SODIUM ION' 22.990 1 ?
? ? ?
5 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ?
? ? ?
6 water nat water 18.015 159 ?
? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'SERINE/THREONINE-PROTEIN KINASE NKIAMRE'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;SMEMYETLGKVGEGSYGTVMKCKHKNTGQIVAIKIFYERPEQSVNKIAMREIKFLKQFHHENLVNLIEVFRQKKKIHLVF
EFIDHTVLDELQHYCHGLESKRLRKYLFQILRAIDYLHSNNIIHRDIKPENILVSQSGITKLCDFGFARTLAAPGDIYDD
EVATRWYRAPELVLKDTSYGKPVDIWALGCMIIEMATGNPYLPSSSDLDLLHKIVLKVGNLSPHLQNIFSKSPIFAGVVL
PQVQHPKNARKKYPKLNGLLADIVHACLQIDPADRISSSDLLHHEYFTRDGFIEKFMPELKAKLLQEAKVNSLIKPKESS
KENEL
;
_entity_poly.pdbx_seq_one_letter_code_can
;SMEMYETLGKVGEGSYGTVMKCKHKNTGQIVAIKIFYERPEQSVNKIAMREIKFLKQFHHENLVNLIEVFRQKKKIHLVF
EFIDHTVLDELQHYCHGLESKRLRKYLFQILRAIDYLHSNNIIHRDIKPENILVSQSGITKLCDFGFARTLAAPGDIYDD
EVATRWYRAPELVLKDTSYGKPVDIWALGCMIIEMATGNPYLPSSSDLDLLHKIVLKVGNLSPHLQNIFSKSPIFAGVVL
PQVQHPKNARKKYPKLNGLLADIVHACLQIDPADRISSSDLLHHEYFTRDGFIEKFMPELKAKLLQEAKVNSLIKPKESS
KENEL
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 SER n
1 2 MET n
1 3 GLU n
1 4 MET n
1 5 TYR n
1 6 GLU n
1 7 THR n
1 8 LEU n
1 9 GLY n
1 10 LYS n
1 11 VAL n
1 12 GLY n
1 13 GLU n
1 14 GLY n
1 15 SER n
1 16 TYR n
1 17 GLY n
1 18 THR n
1 19 VAL n
1 20 MET n
1 21 LYS n
1 22 CYS n
1 23 LYS n
1 24 HIS n
1 25 LYS n
1 26 ASN n
1 27 THR n
1 28 GLY n
1 29 GLN n
1 30 ILE n
1 31 VAL n
1 32 ALA n
1 33 ILE n
1 34 LYS n
1 35 ILE n
1 36 PHE n
1 37 TYR n
1 38 GLU n
1 39 ARG n
1 40 PRO n
1 41 GLU n
1 42 GLN n
1 43 SER n
1 44 VAL n
1 45 ASN n
1 46 LYS n
1 47 ILE n
1 48 ALA n
1 49 MET n
1 50 ARG n
1 51 GLU n
1 52 ILE n
1 53 LYS n
1 54 PHE n
1 55 LEU n
1 56 LYS n
1 57 GLN n
1 58 PHE n
1 59 HIS n
1 60 HIS n
1 61 GLU n
1 62 ASN n
1 63 LEU n
1 64 VAL n
1 65 ASN n
1 66 LEU n
1 67 ILE n
1 68 GLU n
1 69 VAL n
1 70 PHE n
1 71 ARG n
1 72 GLN n
1 73 LYS n
1 74 LYS n
1 75 LYS n
1 76 ILE n
1 77 HIS n
1 78 LEU n
1 79 VAL n
1 80 PHE n
1 81 GLU n
1 82 PHE n
1 83 ILE n
1 84 ASP n
1 85 HIS n
1 86 THR n
1 87 VAL n
1 88 LEU n
1 89 ASP n
1 90 GLU n
1 91 LEU n
1 92 GLN n
1 93 HIS n
1 94 TYR n
1 95 CYS n
1 96 HIS n
1 97 GLY n
1 98 LEU n
1 99 GLU n
1 100 SER n
1 101 LYS n
1 102 ARG n
1 103 LEU n
1 104 ARG n
1 105 LYS n
1 106 TYR n
1 107 LEU n
1 108 PHE n
1 109 GLN n
1 110 ILE n
1 111 LEU n
1 112 ARG n
1 113 ALA n
1 114 ILE n
1 115 ASP n
1 116 TYR n
1 117 LEU n
1 118 HIS n
1 119 SER n
1 120 ASN n
1 121 ASN n
1 122 ILE n
1 123 ILE n
1 124 HIS n
1 125 ARG n
1 126 ASP n
1 127 ILE n
1 128 LYS n
1 129 PRO n
1 130 GLU n
1 131 ASN n
1 132 ILE n
1 133 LEU n
1 134 VAL n
1 135 SER n
1 136 GLN n
1 137 SER n
1 138 GLY n
1 139 ILE n
1 140 THR n
1 141 LYS n
1 142 LEU n
1 143 CYS n
1 144 ASP n
1 145 PHE n
1 146 GLY n
1 147 PHE n
1 148 ALA n
1 149 ARG n
1 150 THR n
1 151 LEU n
1 152 ALA n
1 153 ALA n
1 154 PRO n
1 155 GLY n
1 156 ASP n
1 157 ILE n
1 158 TYR n
1 159 ASP n
1 160 ASP n
1 161 GLU n
1 162 VAL n
1 163 ALA n
1 164 THR n
1 165 ARG n
1 166 TRP n
1 167 TYR n
1 168 ARG n
1 169 ALA n
1 170 PRO n
1 171 GLU n
1 172 LEU n
1 173 VAL n
1 174 LEU n
1 175 LYS n
1 176 ASP n
1 177 THR n
1 178 SER n
1 179 TYR n
1 180 GLY n
1 181 LYS n
1 182 PRO n
1 183 VAL n
1 184 ASP n
1 185 ILE n
1 186 TRP n
1 187 ALA n
1 188 LEU n
1 189 GLY n
1 190 CYS n
1 191 MET n
1 192 ILE n
1 193 ILE n
1 194 GLU n
1 195 MET n
1 196 ALA n
1 197 THR n
1 198 GLY n
1 199 ASN n
1 200 PRO n
1 201 TYR n
1 202 LEU n
1 203 PRO n
1 204 SER n
1 205 SER n
1 206 SER n
1 207 ASP n
1 208 LEU n
1 209 ASP n
1 210 LEU n
1 211 LEU n
1 212 HIS n
1 213 LYS n
1 214 ILE n
1 215 VAL n
1 216 LEU n
1 217 LYS n
1 218 VAL n
1 219 GLY n
1 220 ASN n
1 221 LEU n
1 222 SER n
1 223 PRO n
1 224 HIS n
1 225 LEU n
1 226 GLN n
1 227 ASN n
1 228 ILE n
1 229 PHE n
1 230 SER n
1 231 LYS n
1 232 SER n
1 233 PRO n
1 234 ILE n
1 235 PHE n
1 236 ALA n
1 237 GLY n
1 238 VAL n
1 239 VAL n
1 240 LEU n
1 241 PRO n
1 242 GLN n
1 243 VAL n
1 244 GLN n
1 245 HIS n
1 246 PRO n
1 247 LYS n
1 248 ASN n
1 249 ALA n
1 250 ARG n
1 251 LYS n
1 252 LYS n
1 253 TYR n
1 254 PRO n
1 255 LYS n
1 256 LEU n
1 257 ASN n
1 258 GLY n
1 259 LEU n
1 260 LEU n
1 261 ALA n
1 262 ASP n
1 263 ILE n
1 264 VAL n
1 265 HIS n
1 266 ALA n
1 267 CYS n
1 268 LEU n
1 269 GLN n
1 270 ILE n
1 271 ASP n
1 272 PRO n
1 273 ALA n
1 274 ASP n
1 275 ARG n
1 276 ILE n
1 277 SER n
1 278 SER n
1 279 SER n
1 280 ASP n
1 281 LEU n
1 282 LEU n
1 283 HIS n
1 284 HIS n
1 285 GLU n
1 286 TYR n
1 287 PHE n
1 288 THR n
1 289 ARG n
1 290 ASP n
1 291 GLY n
1 292 PHE n
1 293 ILE n
1 294 GLU n
1 295 LYS n
1 296 PHE n
1 297 MET n
1 298 PRO n
1 299 GLU n
1 300 LEU n
1 301 LYS n
1 302 ALA n
1 303 LYS n
1 304 LEU n
1 305 LEU n
1 306 GLN n
1 307 GLU n
1 308 ALA n
1 309 LYS n
1 310 VAL n
1 311 ASN n
1 312 SER n
1 313 LEU n
1 314 ILE n
1 315 LYS n
1 316 PRO n
1 317 LYS n
1 318 GLU n
1 319 SER n
1 320 SER n
1 321 LYS n
1 322 GLU n
1 323 ASN n
1 324 GLU n
1 325 LEU n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name HUMAN
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name 'FALL ARMYWORM'
_entity_src_gen.pdbx_host_org_scientific_name 'SPODOPTERA FRUGIPERDA'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line SF9
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name PFB-LIC-BSE
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description 'SITE-DIRECTED MUTAGENESIS'
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code CDKL3_HUMAN
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession Q8IVW4
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3ZDU
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 2
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 325
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q8IVW4
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 324
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 324
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 3ZDU SER A 1 ? UNP Q8IVW4 ? ? 'expression tag' 0 1
1 3ZDU ASP A 159 ? UNP Q8IVW4 THR 158 'engineered mutation' 158 2
1 3ZDU GLU A 161 ? UNP Q8IVW4 TYR 160 'engineered mutation' 160 3
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
38R non-polymer . '[4-({4-[(3-cyclopentyl-1H-pyrazol-5-yl)amino]pyrimidin-2-yl}amino)phenyl]acetonitrile' ? 'C20 H21 N7'
359.428
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2'
89.093
ARG 'L-peptide linking' y ARGININE ?
'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3'
132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4'
133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S'
121.158
EDO non-polymer . 1,2-ETHANEDIOL
'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3'
146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4'
147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2'
75.067
HIS 'L-peptide linking' y HISTIDINE ?
'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2'
131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2'
131.173
LYS 'L-peptide linking' y LYSINE ?
'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ?
'C5 H11 N O2 S' 149.211
NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2'
165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2'
115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3'
105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3'
119.119
TRP 'L-peptide linking' y TRYPTOPHAN ?
'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3'
181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2'
117.146
ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409
#
_exptl.entry_id 3ZDU
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.72
_exptl_crystal.density_percent_sol 54.8
_exptl_crystal.description NONE
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '0.03M ZN CL, 30% PEG_6000, 5% ETHYLENE GLYCOL, MES PH5.5'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC CCD'
_diffrn_detector.pdbx_collection_date 2012-10-29
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9611
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'DIAMOND BEAMLINE I04'
_diffrn_source.pdbx_synchrotron_site Diamond
_diffrn_source.pdbx_synchrotron_beamline I04
_diffrn_source.pdbx_wavelength 0.9611
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 3ZDU
_reflns.observed_criterion_sigma_I 2.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 54.54
_reflns.d_resolution_high 2.20
_reflns.number_obs 20446
_reflns.number_all ?
_reflns.percent_possible_obs 99.9
_reflns.pdbx_Rmerge_I_obs 0.10
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 10.70
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 5.2
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 2.20
_reflns_shell.d_res_low 2.27
_reflns_shell.percent_possible_all 100.0
_reflns_shell.Rmerge_I_obs 0.63
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.50
_reflns_shell.pdbx_redundancy 2.5
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 3ZDU
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 18821
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 45.89
_refine.ls_d_res_high 2.20
_refine.ls_percent_reflns_obs 97.10
_refine.ls_R_factor_obs 0.21662
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.21425
_refine.ls_R_factor_R_free 0.26248
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.1
_refine.ls_number_reflns_R_free 1013
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.947
_refine.correlation_coeff_Fo_to_Fc_free 0.908
_refine.B_iso_mean 55.118
_refine.aniso_B[1][1] 1.27
_refine.aniso_B[2][2] 1.27
_refine.aniso_B[3][3] -4.11
_refine.aniso_B[1][2] 1.27
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED'
_refine.pdbx_starting_model 'ENSEMBLE OF PDB ENTRIES 4AGU AND 4AAA'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.260
_refine.pdbx_overall_ESU_R_Free 0.217
_refine.overall_SU_ML 0.176
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 12.919
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2319
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 38
_refine_hist.number_atoms_solvent 159
_refine_hist.number_atoms_total 2516
_refine_hist.d_res_high 2.20
_refine_hist.d_res_low 45.89
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.013 0.019 ? 2414 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.001 0.020 ? 2298 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.510 1.970 ? 3261 'X-RAY DIFFRACTION' ?
r_angle_other_deg 0.793 3.000 ? 5257 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 6.554 5.000 ? 294 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 38.150 23.861 ? 101 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 14.956 15.000 ? 397 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 24.066 15.000 ? 10 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.086 0.200 ? 371 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.007 0.021 ? 2675 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.001 0.020 ? 556 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 1.143 1.999 ? 1185 'X-RAY DIFFRACTION' ?
r_mcbond_other 1.142 1.997 ? 1184 'X-RAY DIFFRACTION' ?
r_mcangle_it 1.823 2.995 ? 1476 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 1.763 2.126 ? 1227 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.200
_refine_ls_shell.d_res_low 2.257
_refine_ls_shell.number_reflns_R_work 1056
_refine_ls_shell.R_factor_R_work 0.628
_refine_ls_shell.percent_reflns_obs 75.55
_refine_ls_shell.R_factor_R_free 0.700
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 50
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 3ZDU
_struct.title 'Crystal structure of the human CDKL3 kinase domain'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3ZDU
_struct_keywords.pdbx_keywords TRANSFERASE
_struct_keywords.text 'TRANSFERASE, PHOSPHO-MIMETIC'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
E N N 4 ?
F N N 5 ?
G N N 5 ?
H N N 6 ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ASN A 45 ? PHE A 58 ? ASN A 44 PHE A 57 1 ? 14
HELX_P HELX_P2 2 VAL A 87 ? TYR A 94 ? VAL A 86 TYR A 93 1 ? 8
HELX_P HELX_P3 3 GLU A 99 ? ASN A 120 ? GLU A 98 ASN A 119 1 ? 22
HELX_P HELX_P4 4 LYS A 128 ? GLU A 130 ? LYS A 127 GLU A 129 5 ? 3
HELX_P HELX_P5 5 GLU A 161 ? TRP A 166 ? GLU A 160 TRP A 165 1 ? 6
HELX_P HELX_P6 6 ALA A 169 ? LEU A 174 ? ALA A 168 LEU A 173 1 ? 6
HELX_P HELX_P7 7 LYS A 181 ? GLY A 198 ? LYS A 180 GLY A 197 1 ? 18
HELX_P HELX_P8 8 SER A 206 ? VAL A 218 ? SER A 205 VAL A 217 1 ? 13
HELX_P HELX_P9 9 SER A 222 ? SER A 232 ? SER A 221 SER A 231 1 ? 11
HELX_P HELX_P10 10 PRO A 233 ? ALA A 236 ? PRO A 232 ALA A 235 5 ? 4
HELX_P HELX_P11 11 ASN A 248 ? TYR A 253 ? ASN A 247 TYR A 252 1 ? 6
HELX_P HELX_P12 12 ASN A 257 ? LEU A 268 ? ASN A 256 LEU A 267 1 ? 12
HELX_P HELX_P13 13 ASP A 271 ? ARG A 275 ? ASP A 270 ARG A 274 5 ? 5
HELX_P HELX_P14 14 SER A 277 ? HIS A 283 ? SER A 276 HIS A 282 1 ? 7
HELX_P HELX_P15 15 HIS A 284 ? ARG A 289 ? HIS A 283 ARG A 288 1 ? 6
HELX_P HELX_P16 16 GLY A 291 ? VAL A 310 ? GLY A 290 VAL A 309 1 ? 20
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A HIS 93 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 92 A ZN 352 1_555 ? ? ? ? ? ? ? 2.050 ? ?
metalc2 metalc ? ? A ASP 126 OD2 ? ? ? 1_555 E NA . NA ? ? A ASP 125 A NA 353 1_555 ? ? ? ? ? ? ? 2.240 ? ?
metalc3 metalc ? ? A ASP 144 OD2 ? ? ? 1_555 E NA . NA ? ? A ASP 143 A NA 353 1_555 ? ? ? ? ? ? ? 2.271 ? ?
metalc4 metalc ? ? A ASP 144 OD1 ? ? ? 1_555 E NA . NA ? ? A ASP 143 A NA 353 1_555 ? ? ? ? ? ? ? 3.178 ? ?
metalc5 metalc ? ? A ASP 176 OD1 ? ? ? 1_555 C ZN . ZN ? ? A ASP 175 A ZN 351 1_555 ? ? ? ? ? ? ? 2.030 ? ?
metalc6 metalc ? ? A HIS 212 NE2 ? ? ? 5_555 D ZN . ZN ? ? A HIS 211 A ZN 352 1_555 ? ? ? ? ? ? ? 2.175 ? ?
metalc7 metalc ? ? A HIS 224 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 223 A ZN 351 1_555 ? ? ? ? ? ? ? 2.071 ? ?
metalc8 metalc ? ? A HIS 283 NE2 ? ? ? 4_546 C ZN . ZN ? ? A HIS 282 A ZN 351 1_555 ? ? ? ? ? ? ? 2.147 ? ?
metalc9 metalc ? ? C ZN . ZN ? ? ? 1_555 H HOH . O ? ? A ZN 351 A HOH 2087 1_555 ? ? ? ? ? ? ? 2.139 ? ?
metalc10 metalc ? ? D ZN . ZN ? ? ? 1_555 H HOH . O ? ? A ZN 352 A HOH 2029 1_555 ? ? ? ? ? ? ? 2.175 ? ?
metalc11 metalc ? ? D ZN . ZN ? ? ? 1_555 H HOH . O ? ? A ZN 352 A HOH 2033 1_555 ? ? ? ? ? ? ? 2.670 ? ?
metalc12 metalc ? ? D ZN . ZN ? ? ? 1_555 H HOH . O ? ? A ZN 352 A HOH 2034 1_555 ? ? ? ? ? ? ? 2.260 ? ?
metalc13 metalc ? ? D ZN . ZN ? ? ? 1_555 H HOH . O ? ? A ZN 352 A HOH 2158 1_555 ? ? ? ? ? ? ? 1.775 ? ?
#
_struct_conn_type.id metalc
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA ? 5 ?
AB ? 3 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA 1 2 ? anti-parallel
AA 2 3 ? anti-parallel
AA 3 4 ? anti-parallel
AA 4 5 ? anti-parallel
AB 1 2 ? anti-parallel
AB 2 3 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA 1 TYR A 5 ? GLY A 14 ? TYR A 4 GLY A 13
AA 2 GLY A 17 ? HIS A 24 ? GLY A 16 HIS A 23
AA 3 ILE A 30 ? ILE A 35 ? ILE A 29 ILE A 34
AA 4 HIS A 77 ? GLU A 81 ? HIS A 76 GLU A 80
AA 5 LEU A 66 ? PHE A 70 ? LEU A 65 PHE A 69
AB 1 HIS A 85 ? THR A 86 ? HIS A 84 THR A 85
AB 2 ILE A 132 ? VAL A 134 ? ILE A 131 VAL A 133
AB 3 THR A 140 ? LEU A 142 ? THR A 139 LEU A 141
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA 1 2 N GLY A 14 ? N GLY A 13 O GLY A 17 ? O GLY A 16
AA 2 3 N CYS A 22 ? N CYS A 21 O VAL A 31 ? O VAL A 30
AA 3 4 N LYS A 34 ? N LYS A 33 O LEU A 78 ? O LEU A 77
AA 4 5 O VAL A 79 ? O VAL A 78 N ILE A 67 ? N ILE A 66
AB 1 2 N HIS A 85 ? N HIS A 84 O VAL A 134 ? O VAL A 133
AB 2 3 N LEU A 133 ? N LEU A 132 O LYS A 141 ? O LYS A 140
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A 38R 350 ? 17 'BINDING SITE FOR RESIDUE 38R A 350'
AC2 Software A ZN 351 ? 4 'BINDING SITE FOR RESIDUE ZN A 351'
AC3 Software A ZN 352 ? 6 'BINDING SITE FOR RESIDUE ZN A 352'
AC4 Software A NA 353 ? 3 'BINDING SITE FOR RESIDUE NA A 353'
AC5 Software A EDO 354 ? 2 'BINDING SITE FOR RESIDUE EDO A 354'
AC6 Software A EDO 355 ? 5 'BINDING SITE FOR RESIDUE EDO A 355'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 17 VAL A 11 ? VAL A 10 . ? 1_555 ?
2 AC1 17 ALA A 32 ? ALA A 31 . ? 1_555 ?
3 AC1 17 LYS A 34 ? LYS A 33 . ? 1_555 ?
4 AC1 17 PHE A 80 ? PHE A 79 . ? 1_555 ?
5 AC1 17 GLU A 81 ? GLU A 80 . ? 1_555 ?
6 AC1 17 PHE A 82 ? PHE A 81 . ? 1_555 ?
7 AC1 17 ILE A 83 ? ILE A 82 . ? 1_555 ?
8 AC1 17 ASP A 84 ? ASP A 83 . ? 1_555 ?
9 AC1 17 HIS A 85 ? HIS A 84 . ? 1_555 ?
10 AC1 17 THR A 86 ? THR A 85 . ? 1_555 ?
11 AC1 17 ASP A 89 ? ASP A 88 . ? 1_555 ?
12 AC1 17 GLU A 130 ? GLU A 129 . ? 1_555 ?
13 AC1 17 ASN A 131 ? ASN A 130 . ? 1_555 ?
14 AC1 17 LEU A 133 ? LEU A 132 . ? 1_555 ?
15 AC1 17 ASP A 144 ? ASP A 143 . ? 1_555 ?
16 AC1 17 HOH H . ? HOH A 2004 . ? 1_555 ?
17 AC1 17 HOH H . ? HOH A 2028 . ? 1_555 ?
18 AC2 4 ASP A 176 ? ASP A 175 . ? 1_555 ?
19 AC2 4 HIS A 224 ? HIS A 223 . ? 1_555 ?
20 AC2 4 HIS A 283 ? HIS A 282 . ? 4_546 ?
21 AC2 4 HOH H . ? HOH A 2087 . ? 1_555 ?
22 AC3 6 HIS A 93 ? HIS A 92 . ? 1_555 ?
23 AC3 6 HIS A 212 ? HIS A 211 . ? 5_555 ?
24 AC3 6 HOH H . ? HOH A 2029 . ? 1_555 ?
25 AC3 6 HOH H . ? HOH A 2033 . ? 1_555 ?
26 AC3 6 HOH H . ? HOH A 2034 . ? 1_555 ?
27 AC3 6 HOH H . ? HOH A 2158 . ? 1_555 ?
28 AC4 3 ASP A 126 ? ASP A 125 . ? 1_555 ?
29 AC4 3 ASP A 144 ? ASP A 143 . ? 1_555 ?
30 AC4 3 HOH H . ? HOH A 2069 . ? 1_555 ?
31 AC5 2 ARG A 112 ? ARG A 111 . ? 1_555 ?
32 AC5 2 HOH H . ? HOH A 2059 . ? 1_555 ?
33 AC6 5 ILE A 276 ? ILE A 275 . ? 1_555 ?
34 AC6 5 SER A 277 ? SER A 276 . ? 1_555 ?
35 AC6 5 ASP A 280 ? ASP A 279 . ? 1_555 ?
36 AC6 5 HOH H . ? HOH A 2057 . ? 1_555 ?
37 AC6 5 HOH H . ? HOH A 2141 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 3ZDU
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 3ZDU
_atom_sites.fract_transf_matrix[1][1] 0.015642
_atom_sites.fract_transf_matrix[1][2] 0.009031
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.018062
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.006111
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
NA
O
S
ZN
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 SER 1 0 ? ? ? A . n
A 1 2 MET 2 1 1 MET MET A . n
A 1 3 GLU 3 2 2 GLU GLU A . n
A 1 4 MET 4 3 3 MET MET A . n
A 1 5 TYR 5 4 4 TYR TYR A . n
A 1 6 GLU 6 5 5 GLU GLU A . n
A 1 7 THR 7 6 6 THR THR A . n
A 1 8 LEU 8 7 7 LEU LEU A . n
A 1 9 GLY 9 8 8 GLY GLY A . n
A 1 10 LYS 10 9 9 LYS LYS A . n
A 1 11 VAL 11 10 10 VAL VAL A . n
A 1 12 GLY 12 11 11 GLY GLY A . n
A 1 13 GLU 13 12 12 GLU GLU A . n
A 1 14 GLY 14 13 13 GLY GLY A . n
A 1 15 SER 15 14 14 SER SER A . n
A 1 16 TYR 16 15 15 TYR TYR A . n
A 1 17 GLY 17 16 16 GLY GLY A . n
A 1 18 THR 18 17 17 THR THR A . n
A 1 19 VAL 19 18 18 VAL VAL A . n
A 1 20 MET 20 19 19 MET MET A . n
A 1 21 LYS 21 20 20 LYS LYS A . n
A 1 22 CYS 22 21 21 CYS CYS A . n
A 1 23 LYS 23 22 22 LYS LYS A . n
A 1 24 HIS 24 23 23 HIS HIS A . n
A 1 25 LYS 25 24 24 LYS LYS A . n
A 1 26 ASN 26 25 25 ASN ASN A . n
A 1 27 THR 27 26 26 THR THR A . n
A 1 28 GLY 28 27 27 GLY GLY A . n
A 1 29 GLN 29 28 28 GLN GLN A . n
A 1 30 ILE 30 29 29 ILE ILE A . n
A 1 31 VAL 31 30 30 VAL VAL A . n
A 1 32 ALA 32 31 31 ALA ALA A . n
A 1 33 ILE 33 32 32 ILE ILE A . n
A 1 34 LYS 34 33 33 LYS LYS A . n
A 1 35 ILE 35 34 34 ILE ILE A . n
A 1 36 PHE 36 35 35 PHE PHE A . n
A 1 37 TYR 37 36 36 TYR TYR A . n
A 1 38 GLU 38 37 ? ? ? A . n
A 1 39 ARG 39 38 ? ? ? A . n
A 1 40 PRO 40 39 ? ? ? A . n
A 1 41 GLU 41 40 ? ? ? A . n
A 1 42 GLN 42 41 ? ? ? A . n
A 1 43 SER 43 42 ? ? ? A . n
A 1 44 VAL 44 43 ? ? ? A . n
A 1 45 ASN 45 44 44 ASN ASN A . n
A 1 46 LYS 46 45 45 LYS LYS A . n
A 1 47 ILE 47 46 46 ILE ILE A . n
A 1 48 ALA 48 47 47 ALA ALA A . n
A 1 49 MET 49 48 48 MET MET A . n
A 1 50 ARG 50 49 49 ARG ARG A . n
A 1 51 GLU 51 50 50 GLU GLU A . n
A 1 52 ILE 52 51 51 ILE ILE A . n
A 1 53 LYS 53 52 52 LYS LYS A . n
A 1 54 PHE 54 53 53 PHE PHE A . n
A 1 55 LEU 55 54 54 LEU LEU A . n
A 1 56 LYS 56 55 55 LYS LYS A . n
A 1 57 GLN 57 56 56 GLN GLN A . n
A 1 58 PHE 58 57 57 PHE PHE A . n
A 1 59 HIS 59 58 58 HIS HIS A . n
A 1 60 HIS 60 59 59 HIS HIS A . n
A 1 61 GLU 61 60 60 GLU GLU A . n
A 1 62 ASN 62 61 61 ASN ASN A . n
A 1 63 LEU 63 62 62 LEU LEU A . n
A 1 64 VAL 64 63 63 VAL VAL A . n
A 1 65 ASN 65 64 64 ASN ASN A . n
A 1 66 LEU 66 65 65 LEU LEU A . n
A 1 67 ILE 67 66 66 ILE ILE A . n
A 1 68 GLU 68 67 67 GLU GLU A . n
A 1 69 VAL 69 68 68 VAL VAL A . n
A 1 70 PHE 70 69 69 PHE PHE A . n
A 1 71 ARG 71 70 70 ARG ARG A . n
A 1 72 GLN 72 71 71 GLN GLN A . n
A 1 73 LYS 73 72 72 LYS LYS A . n
A 1 74 LYS 74 73 73 LYS LYS A . n
A 1 75 LYS 75 74 74 LYS LYS A . n
A 1 76 ILE 76 75 75 ILE ILE A . n
A 1 77 HIS 77 76 76 HIS HIS A . n
A 1 78 LEU 78 77 77 LEU LEU A . n
A 1 79 VAL 79 78 78 VAL VAL A . n
A 1 80 PHE 80 79 79 PHE PHE A . n
A 1 81 GLU 81 80 80 GLU GLU A . n
A 1 82 PHE 82 81 81 PHE PHE A . n
A 1 83 ILE 83 82 82 ILE ILE A . n
A 1 84 ASP 84 83 83 ASP ASP A . n
A 1 85 HIS 85 84 84 HIS HIS A . n
A 1 86 THR 86 85 85 THR THR A . n
A 1 87 VAL 87 86 86 VAL VAL A . n
A 1 88 LEU 88 87 87 LEU LEU A . n
A 1 89 ASP 89 88 88 ASP ASP A . n
A 1 90 GLU 90 89 89 GLU GLU A . n
A 1 91 LEU 91 90 90 LEU LEU A . n
A 1 92 GLN 92 91 91 GLN GLN A . n
A 1 93 HIS 93 92 92 HIS HIS A . n
A 1 94 TYR 94 93 93 TYR TYR A . n
A 1 95 CYS 95 94 94 CYS CYS A . n
A 1 96 HIS 96 95 95 HIS HIS A . n
A 1 97 GLY 97 96 96 GLY GLY A . n
A 1 98 LEU 98 97 97 LEU LEU A . n
A 1 99 GLU 99 98 98 GLU GLU A . n
A 1 100 SER 100 99 99 SER SER A . n
A 1 101 LYS 101 100 100 LYS LYS A . n
A 1 102 ARG 102 101 101 ARG ARG A . n
A 1 103 LEU 103 102 102 LEU LEU A . n
A 1 104 ARG 104 103 103 ARG ARG A . n
A 1 105 LYS 105 104 104 LYS LYS A . n
A 1 106 TYR 106 105 105 TYR TYR A . n
A 1 107 LEU 107 106 106 LEU LEU A . n
A 1 108 PHE 108 107 107 PHE PHE A . n
A 1 109 GLN 109 108 108 GLN GLN A . n
A 1 110 ILE 110 109 109 ILE ILE A . n
A 1 111 LEU 111 110 110 LEU LEU A . n
A 1 112 ARG 112 111 111 ARG ARG A . n
A 1 113 ALA 113 112 112 ALA ALA A . n
A 1 114 ILE 114 113 113 ILE ILE A . n
A 1 115 ASP 115 114 114 ASP ASP A . n
A 1 116 TYR 116 115 115 TYR TYR A . n
A 1 117 LEU 117 116 116 LEU LEU A . n
A 1 118 HIS 118 117 117 HIS HIS A . n
A 1 119 SER 119 118 118 SER SER A . n
A 1 120 ASN 120 119 119 ASN ASN A . n
A 1 121 ASN 121 120 120 ASN ASN A . n
A 1 122 ILE 122 121 121 ILE ILE A . n
A 1 123 ILE 123 122 122 ILE ILE A . n
A 1 124 HIS 124 123 123 HIS HIS A . n
A 1 125 ARG 125 124 124 ARG ARG A . n
A 1 126 ASP 126 125 125 ASP ASP A . n
A 1 127 ILE 127 126 126 ILE ILE A . n
A 1 128 LYS 128 127 127 LYS LYS A . n
A 1 129 PRO 129 128 128 PRO PRO A . n
A 1 130 GLU 130 129 129 GLU GLU A . n
A 1 131 ASN 131 130 130 ASN ASN A . n
A 1 132 ILE 132 131 131 ILE ILE A . n
A 1 133 LEU 133 132 132 LEU LEU A . n
A 1 134 VAL 134 133 133 VAL VAL A . n
A 1 135 SER 135 134 134 SER SER A . n
A 1 136 GLN 136 135 135 GLN GLN A . n
A 1 137 SER 137 136 136 SER SER A . n
A 1 138 GLY 138 137 137 GLY GLY A . n
A 1 139 ILE 139 138 138 ILE ILE A . n
A 1 140 THR 140 139 139 THR THR A . n
A 1 141 LYS 141 140 140 LYS LYS A . n
A 1 142 LEU 142 141 141 LEU LEU A . n
A 1 143 CYS 143 142 142 CYS CYS A . n
A 1 144 ASP 144 143 143 ASP ASP A . n
A 1 145 PHE 145 144 144 PHE PHE A . n
A 1 146 GLY 146 145 145 GLY GLY A . n
A 1 147 PHE 147 146 146 PHE PHE A . n
A 1 148 ALA 148 147 147 ALA ALA A . n
A 1 149 ARG 149 148 148 ARG ARG A . n
A 1 150 THR 150 149 149 THR THR A . n
A 1 151 LEU 151 150 ? ? ? A . n
A 1 152 ALA 152 151 ? ? ? A . n
A 1 153 ALA 153 152 ? ? ? A . n
A 1 154 PRO 154 153 ? ? ? A . n
A 1 155 GLY 155 154 ? ? ? A . n
A 1 156 ASP 156 155 155 ASP ASP A . n
A 1 157 ILE 157 156 156 ILE ILE A . n
A 1 158 TYR 158 157 157 TYR TYR A . n
A 1 159 ASP 159 158 158 ASP ASP A . n
A 1 160 ASP 160 159 159 ASP ASP A . n
A 1 161 GLU 161 160 160 GLU GLU A . n
A 1 162 VAL 162 161 161 VAL VAL A . n
A 1 163 ALA 163 162 162 ALA ALA A . n
A 1 164 THR 164 163 163 THR THR A . n
A 1 165 ARG 165 164 164 ARG ARG A . n
A 1 166 TRP 166 165 165 TRP TRP A . n
A 1 167 TYR 167 166 166 TYR TYR A . n
A 1 168 ARG 168 167 167 ARG ARG A . n
A 1 169 ALA 169 168 168 ALA ALA A . n
A 1 170 PRO 170 169 169 PRO PRO A . n
A 1 171 GLU 171 170 170 GLU GLU A . n
A 1 172 LEU 172 171 171 LEU LEU A . n
A 1 173 VAL 173 172 172 VAL VAL A . n
A 1 174 LEU 174 173 173 LEU LEU A . n
A 1 175 LYS 175 174 174 LYS LYS A . n
A 1 176 ASP 176 175 175 ASP ASP A . n
A 1 177 THR 177 176 176 THR THR A . n
A 1 178 SER 178 177 177 SER SER A . n
A 1 179 TYR 179 178 178 TYR TYR A . n
A 1 180 GLY 180 179 179 GLY GLY A . n
A 1 181 LYS 181 180 180 LYS LYS A . n
A 1 182 PRO 182 181 181 PRO PRO A . n
A 1 183 VAL 183 182 182 VAL VAL A . n
A 1 184 ASP 184 183 183 ASP ASP A . n
A 1 185 ILE 185 184 184 ILE ILE A . n
A 1 186 TRP 186 185 185 TRP TRP A . n
A 1 187 ALA 187 186 186 ALA ALA A . n
A 1 188 LEU 188 187 187 LEU LEU A . n
A 1 189 GLY 189 188 188 GLY GLY A . n
A 1 190 CYS 190 189 189 CYS CYS A . n
A 1 191 MET 191 190 190 MET MET A . n
A 1 192 ILE 192 191 191 ILE ILE A . n
A 1 193 ILE 193 192 192 ILE ILE A . n
A 1 194 GLU 194 193 193 GLU GLU A . n
A 1 195 MET 195 194 194 MET MET A . n
A 1 196 ALA 196 195 195 ALA ALA A . n
A 1 197 THR 197 196 196 THR THR A . n
A 1 198 GLY 198 197 197 GLY GLY A . n
A 1 199 ASN 199 198 198 ASN ASN A . n
A 1 200 PRO 200 199 199 PRO PRO A . n
A 1 201 TYR 201 200 200 TYR TYR A . n
A 1 202 LEU 202 201 201 LEU LEU A . n
A 1 203 PRO 203 202 202 PRO PRO A . n
A 1 204 SER 204 203 203 SER SER A . n
A 1 205 SER 205 204 204 SER SER A . n
A 1 206 SER 206 205 205 SER SER A . n
A 1 207 ASP 207 206 206 ASP ASP A . n
A 1 208 LEU 208 207 207 LEU LEU A . n
A 1 209 ASP 209 208 208 ASP ASP A . n
A 1 210 LEU 210 209 209 LEU LEU A . n
A 1 211 LEU 211 210 210 LEU LEU A . n
A 1 212 HIS 212 211 211 HIS HIS A . n
A 1 213 LYS 213 212 212 LYS LYS A . n
A 1 214 ILE 214 213 213 ILE ILE A . n
A 1 215 VAL 215 214 214 VAL VAL A . n
A 1 216 LEU 216 215 215 LEU LEU A . n
A 1 217 LYS 217 216 216 LYS LYS A . n
A 1 218 VAL 218 217 217 VAL VAL A . n
A 1 219 GLY 219 218 218 GLY GLY A . n
A 1 220 ASN 220 219 219 ASN ASN A . n
A 1 221 LEU 221 220 220 LEU LEU A . n
A 1 222 SER 222 221 221 SER SER A . n
A 1 223 PRO 223 222 222 PRO PRO A . n
A 1 224 HIS 224 223 223 HIS HIS A . n
A 1 225 LEU 225 224 224 LEU LEU A . n
A 1 226 GLN 226 225 225 GLN GLN A . n
A 1 227 ASN 227 226 226 ASN ASN A . n
A 1 228 ILE 228 227 227 ILE ILE A . n
A 1 229 PHE 229 228 228 PHE PHE A . n
A 1 230 SER 230 229 229 SER SER A . n
A 1 231 LYS 231 230 230 LYS LYS A . n
A 1 232 SER 232 231 231 SER SER A . n
A 1 233 PRO 233 232 232 PRO PRO A . n
A 1 234 ILE 234 233 233 ILE ILE A . n
A 1 235 PHE 235 234 234 PHE PHE A . n
A 1 236 ALA 236 235 235 ALA ALA A . n
A 1 237 GLY 237 236 236 GLY GLY A . n
A 1 238 VAL 238 237 237 VAL VAL A . n
A 1 239 VAL 239 238 238 VAL VAL A . n
A 1 240 LEU 240 239 239 LEU LEU A . n
A 1 241 PRO 241 240 240 PRO PRO A . n
A 1 242 GLN 242 241 241 GLN GLN A . n
A 1 243 VAL 243 242 242 VAL VAL A . n
A 1 244 GLN 244 243 243 GLN GLN A . n
A 1 245 HIS 245 244 244 HIS HIS A . n
A 1 246 PRO 246 245 245 PRO PRO A . n
A 1 247 LYS 247 246 246 LYS LYS A . n
A 1 248 ASN 248 247 247 ASN ASN A . n
A 1 249 ALA 249 248 248 ALA ALA A . n
A 1 250 ARG 250 249 249 ARG ARG A . n
A 1 251 LYS 251 250 250 LYS LYS A . n
A 1 252 LYS 252 251 251 LYS LYS A . n
A 1 253 TYR 253 252 252 TYR TYR A . n
A 1 254 PRO 254 253 253 PRO PRO A . n
A 1 255 LYS 255 254 254 LYS LYS A . n
A 1 256 LEU 256 255 255 LEU LEU A . n
A 1 257 ASN 257 256 256 ASN ASN A . n
A 1 258 GLY 258 257 257 GLY GLY A . n
A 1 259 LEU 259 258 258 LEU LEU A . n
A 1 260 LEU 260 259 259 LEU LEU A . n
A 1 261 ALA 261 260 260 ALA ALA A . n
A 1 262 ASP 262 261 261 ASP ASP A . n
A 1 263 ILE 263 262 262 ILE ILE A . n
A 1 264 VAL 264 263 263 VAL VAL A . n
A 1 265 HIS 265 264 264 HIS HIS A . n
A 1 266 ALA 266 265 265 ALA ALA A . n
A 1 267 CYS 267 266 266 CYS CYS A . n
A 1 268 LEU 268 267 267 LEU LEU A . n
A 1 269 GLN 269 268 268 GLN GLN A . n
A 1 270 ILE 270 269 269 ILE ILE A . n
A 1 271 ASP 271 270 270 ASP ASP A . n
A 1 272 PRO 272 271 271 PRO PRO A . n
A 1 273 ALA 273 272 272 ALA ALA A . n
A 1 274 ASP 274 273 273 ASP ASP A . n
A 1 275 ARG 275 274 274 ARG ARG A . n
A 1 276 ILE 276 275 275 ILE ILE A . n
A 1 277 SER 277 276 276 SER SER A . n
A 1 278 SER 278 277 277 SER SER A . n
A 1 279 SER 279 278 278 SER SER A . n
A 1 280 ASP 280 279 279 ASP ASP A . n
A 1 281 LEU 281 280 280 LEU LEU A . n
A 1 282 LEU 282 281 281 LEU LEU A . n
A 1 283 HIS 283 282 282 HIS HIS A . n
A 1 284 HIS 284 283 283 HIS HIS A . n
A 1 285 GLU 285 284 284 GLU GLU A . n
A 1 286 TYR 286 285 285 TYR TYR A . n
A 1 287 PHE 287 286 286 PHE PHE A . n
A 1 288 THR 288 287 287 THR THR A . n
A 1 289 ARG 289 288 288 ARG ARG A . n
A 1 290 ASP 290 289 289 ASP ASP A . n
A 1 291 GLY 291 290 290 GLY GLY A . n
A 1 292 PHE 292 291 291 PHE PHE A . n
A 1 293 ILE 293 292 292 ILE ILE A . n
A 1 294 GLU 294 293 293 GLU GLU A . n
A 1 295 LYS 295 294 294 LYS LYS A . n
A 1 296 PHE 296 295 295 PHE PHE A . n
A 1 297 MET 297 296 296 MET MET A . n
A 1 298 PRO 298 297 297 PRO PRO A . n
A 1 299 GLU 299 298 298 GLU GLU A . n
A 1 300 LEU 300 299 299 LEU LEU A . n
A 1 301 LYS 301 300 300 LYS LYS A . n
A 1 302 ALA 302 301 301 ALA ALA A . n
A 1 303 LYS 303 302 302 LYS LYS A . n
A 1 304 LEU 304 303 303 LEU LEU A . n
A 1 305 LEU 305 304 304 LEU LEU A . n
A 1 306 GLN 306 305 305 GLN GLN A . n
A 1 307 GLU 307 306 306 GLU GLU A . n
A 1 308 ALA 308 307 307 ALA ALA A . n
A 1 309 LYS 309 308 308 LYS LYS A . n
A 1 310 VAL 310 309 309 VAL VAL A . n
A 1 311 ASN 311 310 ? ? ? A . n
A 1 312 SER 312 311 ? ? ? A . n
A 1 313 LEU 313 312 ? ? ? A . n
A 1 314 ILE 314 313 ? ? ? A . n
A 1 315 LYS 315 314 ? ? ? A . n
A 1 316 PRO 316 315 ? ? ? A . n
A 1 317 LYS 317 316 ? ? ? A . n
A 1 318 GLU 318 317 ? ? ? A . n
A 1 319 SER 319 318 ? ? ? A . n
A 1 320 SER 320 319 ? ? ? A . n
A 1 321 LYS 321 320 ? ? ? A . n
A 1 322 GLU 322 321 ? ? ? A . n
A 1 323 ASN 323 322 ? ? ? A . n
A 1 324 GLU 324 323 ? ? ? A . n
A 1 325 LEU 325 324 ? ? ? A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 38R 1 350 350 38R 38R A .
C 3 ZN 1 351 351 ZN ZN A .
D 3 ZN 1 352 352 ZN ZN A .
E 4 NA 1 353 353 NA NA A .
F 5 EDO 1 354 354 EDO EDO A .
G 5 EDO 1 355 355 EDO EDO A .
H 6 HOH 1 2001 2001 HOH HOH A .
H 6 HOH 2 2002 2002 HOH HOH A .
H 6 HOH 3 2003 2003 HOH HOH A .
H 6 HOH 4 2004 2004 HOH HOH A .
H 6 HOH 5 2005 2005 HOH HOH A .
H 6 HOH 6 2006 2006 HOH HOH A .
H 6 HOH 7 2007 2007 HOH HOH A .
H 6 HOH 8 2008 2008 HOH HOH A .
H 6 HOH 9 2009 2009 HOH HOH A .
H 6 HOH 10 2010 2010 HOH HOH A .
H 6 HOH 11 2011 2011 HOH HOH A .
H 6 HOH 12 2012 2012 HOH HOH A .
H 6 HOH 13 2013 2013 HOH HOH A .
H 6 HOH 14 2014 2014 HOH HOH A .
H 6 HOH 15 2015 2015 HOH HOH A .
H 6 HOH 16 2016 2016 HOH HOH A .
H 6 HOH 17 2017 2017 HOH HOH A .
H 6 HOH 18 2018 2018 HOH HOH A .
H 6 HOH 19 2019 2019 HOH HOH A .
H 6 HOH 20 2020 2020 HOH HOH A .
H 6 HOH 21 2021 2021 HOH HOH A .
H 6 HOH 22 2022 2022 HOH HOH A .
H 6 HOH 23 2023 2023 HOH HOH A .
H 6 HOH 24 2024 2024 HOH HOH A .
H 6 HOH 25 2025 2025 HOH HOH A .
H 6 HOH 26 2026 2026 HOH HOH A .
H 6 HOH 27 2027 2027 HOH HOH A .
H 6 HOH 28 2028 2028 HOH HOH A .
H 6 HOH 29 2029 2029 HOH HOH A .
H 6 HOH 30 2030 2030 HOH HOH A .
H 6 HOH 31 2031 2031 HOH HOH A .
H 6 HOH 32 2032 2032 HOH HOH A .
H 6 HOH 33 2033 2033 HOH HOH A .
H 6 HOH 34 2034 2034 HOH HOH A .
H 6 HOH 35 2035 2035 HOH HOH A .
H 6 HOH 36 2036 2036 HOH HOH A .
H 6 HOH 37 2037 2037 HOH HOH A .
H 6 HOH 38 2038 2038 HOH HOH A .
H 6 HOH 39 2039 2039 HOH HOH A .
H 6 HOH 40 2040 2040 HOH HOH A .
H 6 HOH 41 2041 2041 HOH HOH A .
H 6 HOH 42 2042 2042 HOH HOH A .
H 6 HOH 43 2043 2043 HOH HOH A .
H 6 HOH 44 2044 2044 HOH HOH A .
H 6 HOH 45 2045 2045 HOH HOH A .
H 6 HOH 46 2046 2046 HOH HOH A .
H 6 HOH 47 2047 2047 HOH HOH A .
H 6 HOH 48 2048 2048 HOH HOH A .
H 6 HOH 49 2049 2049 HOH HOH A .
H 6 HOH 50 2050 2050 HOH HOH A .
H 6 HOH 51 2051 2051 HOH HOH A .
H 6 HOH 52 2052 2052 HOH HOH A .
H 6 HOH 53 2053 2053 HOH HOH A .
H 6 HOH 54 2054 2054 HOH HOH A .
H 6 HOH 55 2055 2055 HOH HOH A .
H 6 HOH 56 2056 2056 HOH HOH A .
H 6 HOH 57 2057 2057 HOH HOH A .
H 6 HOH 58 2058 2058 HOH HOH A .
H 6 HOH 59 2059 2059 HOH HOH A .
H 6 HOH 60 2060 2060 HOH HOH A .
H 6 HOH 61 2061 2061 HOH HOH A .
H 6 HOH 62 2062 2062 HOH HOH A .
H 6 HOH 63 2063 2063 HOH HOH A .
H 6 HOH 64 2064 2064 HOH HOH A .
H 6 HOH 65 2065 2065 HOH HOH A .
H 6 HOH 66 2066 2066 HOH HOH A .
H 6 HOH 67 2067 2067 HOH HOH A .
H 6 HOH 68 2068 2068 HOH HOH A .
H 6 HOH 69 2069 2069 HOH HOH A .
H 6 HOH 70 2070 2070 HOH HOH A .
H 6 HOH 71 2071 2071 HOH HOH A .
H 6 HOH 72 2072 2072 HOH HOH A .
H 6 HOH 73 2073 2073 HOH HOH A .
H 6 HOH 74 2074 2074 HOH HOH A .
H 6 HOH 75 2075 2075 HOH HOH A .
H 6 HOH 76 2076 2076 HOH HOH A .
H 6 HOH 77 2077 2077 HOH HOH A .
H 6 HOH 78 2078 2078 HOH HOH A .
H 6 HOH 79 2079 2079 HOH HOH A .
H 6 HOH 80 2080 2080 HOH HOH A .
H 6 HOH 81 2081 2081 HOH HOH A .
H 6 HOH 82 2082 2082 HOH HOH A .
H 6 HOH 83 2083 2083 HOH HOH A .
H 6 HOH 84 2084 2084 HOH HOH A .
H 6 HOH 85 2085 2085 HOH HOH A .
H 6 HOH 86 2086 2086 HOH HOH A .
H 6 HOH 87 2087 2087 HOH HOH A .
H 6 HOH 88 2088 2088 HOH HOH A .
H 6 HOH 89 2089 2089 HOH HOH A .
H 6 HOH 90 2090 2090 HOH HOH A .
H 6 HOH 91 2091 2091 HOH HOH A .
H 6 HOH 92 2092 2092 HOH HOH A .
H 6 HOH 93 2093 2093 HOH HOH A .
H 6 HOH 94 2094 2094 HOH HOH A .
H 6 HOH 95 2095 2095 HOH HOH A .
H 6 HOH 96 2096 2096 HOH HOH A .
H 6 HOH 97 2097 2097 HOH HOH A .
H 6 HOH 98 2098 2098 HOH HOH A .
H 6 HOH 99 2099 2099 HOH HOH A .
H 6 HOH 100 2100 2100 HOH HOH A .
H 6 HOH 101 2101 2101 HOH HOH A .
H 6 HOH 102 2102 2102 HOH HOH A .
H 6 HOH 103 2103 2103 HOH HOH A .
H 6 HOH 104 2104 2104 HOH HOH A .
H 6 HOH 105 2105 2105 HOH HOH A .
H 6 HOH 106 2106 2106 HOH HOH A .
H 6 HOH 107 2107 2107 HOH HOH A .
H 6 HOH 108 2108 2108 HOH HOH A .
H 6 HOH 109 2109 2109 HOH HOH A .
H 6 HOH 110 2110 2110 HOH HOH A .
H 6 HOH 111 2111 2111 HOH HOH A .
H 6 HOH 112 2112 2112 HOH HOH A .
H 6 HOH 113 2113 2113 HOH HOH A .
H 6 HOH 114 2114 2114 HOH HOH A .
H 6 HOH 115 2115 2115 HOH HOH A .
H 6 HOH 116 2116 2116 HOH HOH A .
H 6 HOH 117 2117 2117 HOH HOH A .
H 6 HOH 118 2118 2118 HOH HOH A .
H 6 HOH 119 2119 2119 HOH HOH A .
H 6 HOH 120 2120 2120 HOH HOH A .
H 6 HOH 121 2121 2121 HOH HOH A .
H 6 HOH 122 2122 2122 HOH HOH A .
H 6 HOH 123 2123 2123 HOH HOH A .
H 6 HOH 124 2124 2124 HOH HOH A .
H 6 HOH 125 2125 2125 HOH HOH A .
H 6 HOH 126 2126 2126 HOH HOH A .
H 6 HOH 127 2127 2127 HOH HOH A .
H 6 HOH 128 2128 2128 HOH HOH A .
H 6 HOH 129 2129 2129 HOH HOH A .
H 6 HOH 130 2130 2130 HOH HOH A .
H 6 HOH 131 2131 2131 HOH HOH A .
H 6 HOH 132 2132 2132 HOH HOH A .
H 6 HOH 133 2133 2133 HOH HOH A .
H 6 HOH 134 2134 2134 HOH HOH A .
H 6 HOH 135 2135 2135 HOH HOH A .
H 6 HOH 136 2136 2136 HOH HOH A .
H 6 HOH 137 2137 2137 HOH HOH A .
H 6 HOH 138 2138 2138 HOH HOH A .
H 6 HOH 139 2139 2139 HOH HOH A .
H 6 HOH 140 2140 2140 HOH HOH A .
H 6 HOH 141 2141 2141 HOH HOH A .
H 6 HOH 142 2142 2142 HOH HOH A .
H 6 HOH 143 2143 2143 HOH HOH A .
H 6 HOH 144 2144 2144 HOH HOH A .
H 6 HOH 145 2145 2145 HOH HOH A .
H 6 HOH 146 2146 2146 HOH HOH A .
H 6 HOH 147 2147 2147 HOH HOH A .
H 6 HOH 148 2148 2148 HOH HOH A .
H 6 HOH 149 2149 2149 HOH HOH A .
H 6 HOH 150 2150 2150 HOH HOH A .
H 6 HOH 151 2151 2151 HOH HOH A .
H 6 HOH 152 2152 2152 HOH HOH A .
H 6 HOH 153 2153 2153 HOH HOH A .
H 6 HOH 154 2154 2154 HOH HOH A .
H 6 HOH 155 2155 2155 HOH HOH A .
H 6 HOH 156 2156 2156 HOH HOH A .
H 6 HOH 157 2157 2157 HOH HOH A .
H 6 HOH 158 2158 2158 HOH HOH A .
H 6 HOH 159 2159 2159 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2840 ?
1 MORE -152.7 ?
1 'SSA (A^2)' 26930 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 109.0866666667
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 2079
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id H
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 NE2 ? A HIS 93 ? A HIS 92 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 NE2 ? A HIS 212 ? A HIS 211 ? 5_555 107.6 ?
2 NE2 ? A HIS 93 ? A HIS 92 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2029 ? 1_555 88.5 ?
3 NE2 ? A HIS 212 ? A HIS 211 ? 5_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2029 ? 1_555 96.0 ?
4 NE2 ? A HIS 93 ? A HIS 92 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2033 ? 1_555 83.5 ?
5 NE2 ? A HIS 212 ? A HIS 211 ? 5_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2033 ? 1_555 167.5 ?
6 O ? H HOH . ? A HOH 2029 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2033 ? 1_555 78.2 ?
7 NE2 ? A HIS 93 ? A HIS 92 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2034 ? 1_555 102.3 ?
8 NE2 ? A HIS 212 ? A HIS 211 ? 5_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2034 ? 1_555 108.3 ?
9 O ? H HOH . ? A HOH 2029 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2034 ? 1_555 148.6 ?
10 O ? H HOH . ? A HOH 2033 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2034 ? 1_555 73.9 ?
11 NE2 ? A HIS 93 ? A HIS 92 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2158 ? 1_555 154.0 ?
12 NE2 ? A HIS 212 ? A HIS 211 ? 5_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2158 ? 1_555 98.3 ?
13 O ? H HOH . ? A HOH 2029 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2158 ? 1_555 91.4 ?
14 O ? H HOH . ? A HOH 2033 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2158 ? 1_555 71.0 ?
15 O ? H HOH . ? A HOH 2034 ? 1_555 ZN ? D ZN . ? A ZN 352 ? 1_555 O ? H HOH . ? A HOH 2158 ? 1_555 66.2 ?
16 OD2 ? A ASP 126 ? A ASP 125 ? 1_555 NA ? E NA . ? A NA 353 ? 1_555 OD2 ? A ASP 144 ? A ASP 143 ? 1_555 92.6 ?
17 OD2 ? A ASP 126 ? A ASP 125 ? 1_555 NA ? E NA . ? A NA 353 ? 1_555 OD1 ? A ASP 144 ? A ASP 143 ? 1_555 125.4 ?
18 OD2 ? A ASP 144 ? A ASP 143 ? 1_555 NA ? E NA . ? A NA 353 ? 1_555 OD1 ? A ASP 144 ? A ASP 143 ? 1_555 44.2 ?
19 OD1 ? A ASP 176 ? A ASP 175 ? 1_555 ZN ? C ZN . ? A ZN 351 ? 1_555 NE2 ? A HIS 224 ? A HIS 223 ? 1_555 126.3 ?
20 OD1 ? A ASP 176 ? A ASP 175 ? 1_555 ZN ? C ZN . ? A ZN 351 ? 1_555 NE2 ? A HIS 283 ? A HIS 282 ? 4_546 95.8 ?
21 NE2 ? A HIS 224 ? A HIS 223 ? 1_555 ZN ? C ZN . ? A ZN 351 ? 1_555 NE2 ? A HIS 283 ? A HIS 282 ? 4_546 111.6 ?
22 OD1 ? A ASP 176 ? A ASP 175 ? 1_555 ZN ? C ZN . ? A ZN 351 ? 1_555 O ? H HOH . ? A HOH 2087 ? 1_555 104.0 ?
23 NE2 ? A HIS 224 ? A HIS 223 ? 1_555 ZN ? C ZN . ? A ZN 351 ? 1_555 O ? H HOH . ? A HOH 2087 ? 1_555 110.2 ?
24 NE2 ? A HIS 283 ? A HIS 282 ? 4_546 ZN ? C ZN . ? A ZN 351 ? 1_555 O ? H HOH . ? A HOH 2087 ? 1_555 107.0 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2013-03-20
2 'Structure model' 1 1 2018-01-24
3 'Structure model' 1 2 2022-03-30
4 'Structure model' 1 3 2023-12-20
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 2 'Structure model' 'Structure summary'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' Other
6 4 'Structure model' 'Data collection'
7 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' audit_author
2 2 'Structure model' citation_author
3 3 'Structure model' citation
4 3 'Structure model' citation_author
5 3 'Structure model' database_2
6 3 'Structure model' pdbx_database_status
7 3 'Structure model' pdbx_struct_conn_angle
8 3 'Structure model' struct_conn
9 3 'Structure model' struct_site
10 4 'Structure model' chem_comp_atom
11 4 'Structure model' chem_comp_bond
12 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_audit_author.name'
2 2 'Structure model' '_citation_author.name'
3 3 'Structure model' '_citation.country'
4 3 'Structure model' '_citation.journal_abbrev'
5 3 'Structure model' '_citation.journal_id_CSD'
6 3 'Structure model' '_citation.journal_id_ISSN'
7 3 'Structure model' '_citation.journal_volume'
8 3 'Structure model' '_citation.page_first'
9 3 'Structure model' '_citation.page_last'
10 3 'Structure model' '_citation.pdbx_database_id_DOI'
11 3 'Structure model' '_citation.pdbx_database_id_PubMed'
12 3 'Structure model' '_citation.title'
13 3 'Structure model' '_citation.year'
14 3 'Structure model' '_database_2.pdbx_DOI'
15 3 'Structure model' '_database_2.pdbx_database_accession'
16 3 'Structure model' '_pdbx_database_status.status_code_sf'
17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'
24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id'
25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id'
28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id'
29 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
30 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
31 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
32 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
33 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
34 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
35 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'
36 3 'Structure model' '_pdbx_struct_conn_angle.value'
37 3 'Structure model' '_struct_conn.pdbx_dist_value'
38 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
39 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
40 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
41 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
42 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
43 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'
44 3 'Structure model' '_struct_conn.ptnr1_symmetry'
45 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
46 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
47 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
48 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
49 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
50 3 'Structure model' '_struct_conn.ptnr2_label_seq_id'
51 3 'Structure model' '_struct_conn.ptnr2_symmetry'
52 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
53 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
54 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][3]
'X-RAY DIFFRACTION' 1 ? refined 17.8190 25.5512 57.4661 0.7106 0.4851 0.5841 0.2165 -0.0044 0.0154 9.7144 8.6422 0.2499 -7.1114
0.9855 -0.2517 -0.1024 0.4717 -0.1950 -0.1274 -0.1059 1.5142 -0.0903 -0.1103 0.2083
'X-RAY DIFFRACTION' 2 ? refined 17.9462 16.7333 72.0421 2.0469 1.5519 0.4267 1.5132 0.2741 0.1527 1.7654 12.8234 0.7605 0.6072
-0.2830 -1.4743 -0.6263 0.2342 0.1460 0.2212 0.9286 1.1553 -0.9654 -1.0206 -0.3024
'X-RAY DIFFRACTION' 3 ? refined 29.7899 16.5263 66.8983 0.4545 0.2068 0.2373 0.0881 0.1338 0.0270 0.9742 4.0969 3.6202 -1.2624
1.3157 -0.1263 -0.1042 -0.1322 -0.0222 0.1730 0.1913 0.4565 -0.5113 -0.3617 -0.0872
'X-RAY DIFFRACTION' 4 ? refined 37.5172 -0.1157 69.6608 0.1973 0.1359 0.0280 0.0359 0.0127 0.0112 2.5598 4.8450 2.8972 0.9680
-0.4422 0.5160 -0.0688 -0.0314 -0.1725 0.0837 0.0981 -0.1455 0.1344 0.0201 -0.0294
'X-RAY DIFFRACTION' 5 ? refined 36.1528 35.2414 70.9341 0.7594 0.6347 0.7342 0.0032 0.0115 0.0128 1.2484 0.9283 22.5698 -0.1673
-5.0580 -0.6586 -0.1697 0.0389 -0.0340 0.6633 0.2254 0.2885 -0.4309 -0.5585 -0.0557
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 34 ? ? ? ?
'X-RAY DIFFRACTION' 2 2 A 35 ? ? A 60 ? ? ? ?
'X-RAY DIFFRACTION' 3 3 A 61 ? ? A 159 ? ? ? ?
'X-RAY DIFFRACTION' 4 4 A 160 ? ? A 302 ? ? ? ?
'X-RAY DIFFRACTION' 5 5 A 303 ? ? A 309 ? ? ? ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.7.0032 ? 1
MOSFLM 'data reduction' . ? 2
Aimless 'data scaling' . ? 3
PHASER phasing . ? 4
#
_pdbx_entry_details.entry_id 3ZDU
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details '38R: ATP-MIMETIC KINASE INHIBITOR ASC67'
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 2057
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 2141
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 1.92
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 GLU A 2 ? ? -36.78 121.04
2 1 ARG A 124 ? ? 80.42 3.99
3 1 ASP A 125 ? ? -156.16 47.86
4 1 ASP A 143 ? ? 75.18 92.44
5 1 LEU A 201 ? ? -118.69 55.73
6 1 ARG A 288 ? ? -27.81 -60.03
#
_pdbx_distant_solvent_atoms.id 1
_pdbx_distant_solvent_atoms.PDB_model_num 1
_pdbx_distant_solvent_atoms.auth_atom_id O
_pdbx_distant_solvent_atoms.label_alt_id ?
_pdbx_distant_solvent_atoms.auth_asym_id A
_pdbx_distant_solvent_atoms.auth_comp_id HOH
_pdbx_distant_solvent_atoms.auth_seq_id 2035
_pdbx_distant_solvent_atoms.PDB_ins_code ?
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.11
_pdbx_distant_solvent_atoms.neighbor_ligand_distance .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A GLU 2 ? CG ? A GLU 3 CG
2 1 Y 1 A GLU 2 ? CD ? A GLU 3 CD
3 1 Y 1 A GLU 2 ? OE1 ? A GLU 3 OE1
4 1 Y 1 A GLU 2 ? OE2 ? A GLU 3 OE2
5 1 Y 1 A SER 14 ? OG ? A SER 15 OG
6 1 Y 1 A LYS 22 ? NZ ? A LYS 23 NZ
7 1 Y 1 A LYS 45 ? CG ? A LYS 46 CG
8 1 Y 1 A LYS 45 ? CD ? A LYS 46 CD
9 1 Y 1 A LYS 45 ? CE ? A LYS 46 CE
10 1 Y 1 A LYS 45 ? NZ ? A LYS 46 NZ
11 1 Y 1 A ARG 49 ? NE ? A ARG 50 NE
12 1 Y 1 A ARG 49 ? CZ ? A ARG 50 CZ
13 1 Y 1 A ARG 49 ? NH1 ? A ARG 50 NH1
14 1 Y 1 A ARG 49 ? NH2 ? A ARG 50 NH2
15 1 Y 1 A LYS 52 ? CE ? A LYS 53 CE
16 1 Y 1 A LYS 52 ? NZ ? A LYS 53 NZ
17 1 Y 1 A LYS 55 ? CG ? A LYS 56 CG
18 1 Y 1 A LYS 55 ? CD ? A LYS 56 CD
19 1 Y 1 A LYS 55 ? CE ? A LYS 56 CE
20 1 Y 1 A LYS 55 ? NZ ? A LYS 56 NZ
21 1 Y 1 A GLN 56 ? CG ? A GLN 57 CG
22 1 Y 1 A GLN 56 ? CD ? A GLN 57 CD
23 1 Y 1 A GLN 56 ? OE1 ? A GLN 57 OE1
24 1 Y 1 A GLN 56 ? NE2 ? A GLN 57 NE2
25 1 Y 1 A ARG 70 ? CG ? A ARG 71 CG
26 1 Y 1 A ARG 70 ? CD ? A ARG 71 CD
27 1 Y 1 A ARG 70 ? NE ? A ARG 71 NE
28 1 Y 1 A ARG 70 ? CZ ? A ARG 71 CZ
29 1 Y 1 A ARG 70 ? NH1 ? A ARG 71 NH1
30 1 Y 1 A ARG 70 ? NH2 ? A ARG 71 NH2
31 1 Y 1 A LYS 72 ? CG ? A LYS 73 CG
32 1 Y 1 A LYS 72 ? CD ? A LYS 73 CD
33 1 Y 1 A LYS 72 ? CE ? A LYS 73 CE
34 1 Y 1 A LYS 72 ? NZ ? A LYS 73 NZ
35 1 Y 1 A LYS 73 ? CG ? A LYS 74 CG
36 1 Y 1 A LYS 73 ? CD ? A LYS 74 CD
37 1 Y 1 A LYS 73 ? CE ? A LYS 74 CE
38 1 Y 1 A LYS 73 ? NZ ? A LYS 74 NZ
39 1 Y 1 A LYS 100 ? CE ? A LYS 101 CE
40 1 Y 1 A LYS 100 ? NZ ? A LYS 101 NZ
41 1 Y 1 A ASP 155 ? CG ? A ASP 156 CG
42 1 Y 1 A ASP 155 ? OD1 ? A ASP 156 OD1
43 1 Y 1 A ASP 155 ? OD2 ? A ASP 156 OD2
44 1 Y 1 A TYR 157 ? CG ? A TYR 158 CG
45 1 Y 1 A TYR 157 ? CD1 ? A TYR 158 CD1
46 1 Y 1 A TYR 157 ? CD2 ? A TYR 158 CD2
47 1 Y 1 A TYR 157 ? CE1 ? A TYR 158 CE1
48 1 Y 1 A TYR 157 ? CE2 ? A TYR 158 CE2
49 1 Y 1 A TYR 157 ? CZ ? A TYR 158 CZ
50 1 Y 1 A TYR 157 ? OH ? A TYR 158 OH
51 1 Y 1 A ASP 159 ? CG ? A ASP 160 CG
52 1 Y 1 A ASP 159 ? OD1 ? A ASP 160 OD1
53 1 Y 1 A ASP 159 ? OD2 ? A ASP 160 OD2
54 1 Y 1 A LYS 212 ? CD ? A LYS 213 CD
55 1 Y 1 A LYS 212 ? CE ? A LYS 213 CE
56 1 Y 1 A LYS 212 ? NZ ? A LYS 213 NZ
57 1 Y 1 A LYS 230 ? CE ? A LYS 231 CE
58 1 Y 1 A LYS 230 ? NZ ? A LYS 231 NZ
59 1 Y 1 A GLN 243 ? CG ? A GLN 244 CG
60 1 Y 1 A GLN 243 ? CD ? A GLN 244 CD
61 1 Y 1 A GLN 243 ? OE1 ? A GLN 244 OE1
62 1 Y 1 A GLN 243 ? NE2 ? A GLN 244 NE2
63 1 Y 1 A LYS 246 ? CE ? A LYS 247 CE
64 1 Y 1 A LYS 246 ? NZ ? A LYS 247 NZ
65 1 Y 1 A LYS 250 ? CD ? A LYS 251 CD
66 1 Y 1 A LYS 250 ? CE ? A LYS 251 CE
67 1 Y 1 A LYS 250 ? NZ ? A LYS 251 NZ
68 1 Y 1 A LYS 254 ? CG ? A LYS 255 CG
69 1 Y 1 A LYS 254 ? CD ? A LYS 255 CD
70 1 Y 1 A LYS 254 ? CE ? A LYS 255 CE
71 1 Y 1 A LYS 254 ? NZ ? A LYS 255 NZ
72 1 Y 1 A ASP 289 ? CG ? A ASP 290 CG
73 1 Y 1 A ASP 289 ? OD1 ? A ASP 290 OD1
74 1 Y 1 A ASP 289 ? OD2 ? A ASP 290 OD2
75 1 Y 1 A LYS 294 ? CE ? A LYS 295 CE
76 1 Y 1 A LYS 294 ? NZ ? A LYS 295 NZ
77 1 Y 1 A LYS 300 ? CG ? A LYS 301 CG
78 1 Y 1 A LYS 300 ? CD ? A LYS 301 CD
79 1 Y 1 A LYS 300 ? CE ? A LYS 301 CE
80 1 Y 1 A LYS 300 ? NZ ? A LYS 301 NZ
81 1 Y 1 A LYS 302 ? CG ? A LYS 303 CG
82 1 Y 1 A LYS 302 ? CD ? A LYS 303 CD
83 1 Y 1 A LYS 302 ? CE ? A LYS 303 CE
84 1 Y 1 A LYS 302 ? NZ ? A LYS 303 NZ
85 1 Y 1 A GLN 305 ? CG ? A GLN 306 CG
86 1 Y 1 A GLN 305 ? CD ? A GLN 306 CD
87 1 Y 1 A GLN 305 ? OE1 ? A GLN 306 OE1
88 1 Y 1 A GLN 305 ? NE2 ? A GLN 306 NE2
89 1 Y 1 A GLU 306 ? CG ? A GLU 307 CG
90 1 Y 1 A GLU 306 ? CD ? A GLU 307 CD
91 1 Y 1 A GLU 306 ? OE1 ? A GLU 307 OE1
92 1 Y 1 A GLU 306 ? OE2 ? A GLU 307 OE2
93 1 Y 1 A LYS 308 ? CG ? A LYS 309 CG
94 1 Y 1 A LYS 308 ? CD ? A LYS 309 CD
95 1 Y 1 A LYS 308 ? CE ? A LYS 309 CE
96 1 Y 1 A LYS 308 ? NZ ? A LYS 309 NZ
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A SER 0 ? A SER 1
2 1 Y 1 A GLU 37 ? A GLU 38
3 1 Y 1 A ARG 38 ? A ARG 39
4 1 Y 1 A PRO 39 ? A PRO 40
5 1 Y 1 A GLU 40 ? A GLU 41
6 1 Y 1 A GLN 41 ? A GLN 42
7 1 Y 1 A SER 42 ? A SER 43
8 1 Y 1 A VAL 43 ? A VAL 44
9 1 Y 1 A LEU 150 ? A LEU 151
10 1 Y 1 A ALA 151 ? A ALA 152
11 1 Y 1 A ALA 152 ? A ALA 153
12 1 Y 1 A PRO 153 ? A PRO 154
13 1 Y 1 A GLY 154 ? A GLY 155
14 1 Y 1 A ASN 310 ? A ASN 311
15 1 Y 1 A SER 311 ? A SER 312
16 1 Y 1 A LEU 312 ? A LEU 313
17 1 Y 1 A ILE 313 ? A ILE 314
18 1 Y 1 A LYS 314 ? A LYS 315
19 1 Y 1 A PRO 315 ? A PRO 316
20 1 Y 1 A LYS 316 ? A LYS 317
21 1 Y 1 A GLU 317 ? A GLU 318
22 1 Y 1 A SER 318 ? A SER 319
23 1 Y 1 A SER 319 ? A SER 320
24 1 Y 1 A LYS 320 ? A LYS 321
25 1 Y 1 A GLU 321 ? A GLU 322
26 1 Y 1 A ASN 322 ? A ASN 323
27 1 Y 1 A GLU 323 ? A GLU 324
28 1 Y 1 A LEU 324 ? A LEU 325
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
38R C4 C Y N 1
38R C5 C Y N 2
38R C6 C Y N 3
38R N1 N Y N 4
38R N3 N Y N 5
38R C1U C N N 6
38R C1T C N N 7
38R C1R C Y N 8
38R C1S C Y N 9
38R N1Q N Y N 10
38R N1P N Y N 11
38R C1H C Y N 12
38R N1G N N N 13
38R C1Y C N N 14
38R C2 C Y N 15
38R N1I N N N 16
38R C1J C Y N 17
38R C1K C Y N 18
38R C1L C Y N 19
38R C1O C Y N 20
38R C1N C Y N 21
38R C1M C Y N 22
38R C1V C N N 23
38R C01 C N N 24
38R C1Z C N N 25
38R C03 C N N 26
38R N1A N N N 27
38R H5 H N N 28
38R H1G H N N 29
38R H6 H N N 30
38R H1U1 H N N 31
38R H1U2 H N N 32
38R H1T H N N 33
38R H011 H N N 34
38R H012 H N N 35
38R H031 H N N 36
38R H032 H N N 37
38R H1S H N N 38
38R H1P H N N 39
38R H1Y1 H N N 40
38R H1Y2 H N N 41
38R H1I H N N 42
38R H1O H N N 43
38R H1K H N N 44
38R H1N H N N 45
38R H1L H N N 46
38R H1V1 H N N 47
38R H1V2 H N N 48
ALA N N N N 49
ALA CA C N S 50
ALA C C N N 51
ALA O O N N 52
ALA CB C N N 53
ALA OXT O N N 54
ALA H H N N 55
ALA H2 H N N 56
ALA HA H N N 57
ALA HB1 H N N 58
ALA HB2 H N N 59
ALA HB3 H N N 60
ALA HXT H N N 61
ARG N N N N 62
ARG CA C N S 63
ARG C C N N 64
ARG O O N N 65
ARG CB C N N 66
ARG CG C N N 67
ARG CD C N N 68
ARG NE N N N 69
ARG CZ C N N 70
ARG NH1 N N N 71
ARG NH2 N N N 72
ARG OXT O N N 73
ARG H H N N 74
ARG H2 H N N 75
ARG HA H N N 76
ARG HB2 H N N 77
ARG HB3 H N N 78
ARG HG2 H N N 79
ARG HG3 H N N 80
ARG HD2 H N N 81
ARG HD3 H N N 82
ARG HE H N N 83
ARG HH11 H N N 84
ARG HH12 H N N 85
ARG HH21 H N N 86
ARG HH22 H N N 87
ARG HXT H N N 88
ASN N N N N 89
ASN CA C N S 90
ASN C C N N 91
ASN O O N N 92
ASN CB C N N 93
ASN CG C N N 94
ASN OD1 O N N 95
ASN ND2 N N N 96
ASN OXT O N N 97
ASN H H N N 98
ASN H2 H N N 99
ASN HA H N N 100
ASN HB2 H N N 101
ASN HB3 H N N 102
ASN HD21 H N N 103
ASN HD22 H N N 104
ASN HXT H N N 105
ASP N N N N 106
ASP CA C N S 107
ASP C C N N 108
ASP O O N N 109
ASP CB C N N 110
ASP CG C N N 111
ASP OD1 O N N 112
ASP OD2 O N N 113
ASP OXT O N N 114
ASP H H N N 115
ASP H2 H N N 116
ASP HA H N N 117
ASP HB2 H N N 118
ASP HB3 H N N 119
ASP HD2 H N N 120
ASP HXT H N N 121
CYS N N N N 122
CYS CA C N R 123
CYS C C N N 124
CYS O O N N 125
CYS CB C N N 126
CYS SG S N N 127
CYS OXT O N N 128
CYS H H N N 129
CYS H2 H N N 130
CYS HA H N N 131
CYS HB2 H N N 132
CYS HB3 H N N 133
CYS HG H N N 134
CYS HXT H N N 135
EDO C1 C N N 136
EDO O1 O N N 137
EDO C2 C N N 138
EDO O2 O N N 139
EDO H11 H N N 140
EDO H12 H N N 141
EDO HO1 H N N 142
EDO H21 H N N 143
EDO H22 H N N 144
EDO HO2 H N N 145
GLN N N N N 146
GLN CA C N S 147
GLN C C N N 148
GLN O O N N 149
GLN CB C N N 150
GLN CG C N N 151
GLN CD C N N 152
GLN OE1 O N N 153
GLN NE2 N N N 154
GLN OXT O N N 155
GLN H H N N 156
GLN H2 H N N 157
GLN HA H N N 158
GLN HB2 H N N 159
GLN HB3 H N N 160
GLN HG2 H N N 161
GLN HG3 H N N 162
GLN HE21 H N N 163
GLN HE22 H N N 164
GLN HXT H N N 165
GLU N N N N 166
GLU CA C N S 167
GLU C C N N 168
GLU O O N N 169
GLU CB C N N 170
GLU CG C N N 171
GLU CD C N N 172
GLU OE1 O N N 173
GLU OE2 O N N 174
GLU OXT O N N 175
GLU H H N N 176
GLU H2 H N N 177
GLU HA H N N 178
GLU HB2 H N N 179
GLU HB3 H N N 180
GLU HG2 H N N 181
GLU HG3 H N N 182
GLU HE2 H N N 183
GLU HXT H N N 184
GLY N N N N 185
GLY CA C N N 186
GLY C C N N 187
GLY O O N N 188
GLY OXT O N N 189
GLY H H N N 190
GLY H2 H N N 191
GLY HA2 H N N 192
GLY HA3 H N N 193
GLY HXT H N N 194
HIS N N N N 195
HIS CA C N S 196
HIS C C N N 197
HIS O O N N 198
HIS CB C N N 199
HIS CG C Y N 200
HIS ND1 N Y N 201
HIS CD2 C Y N 202
HIS CE1 C Y N 203
HIS NE2 N Y N 204
HIS OXT O N N 205
HIS H H N N 206
HIS H2 H N N 207
HIS HA H N N 208
HIS HB2 H N N 209
HIS HB3 H N N 210
HIS HD1 H N N 211
HIS HD2 H N N 212
HIS HE1 H N N 213
HIS HE2 H N N 214
HIS HXT H N N 215
HOH O O N N 216
HOH H1 H N N 217
HOH H2 H N N 218
ILE N N N N 219
ILE CA C N S 220
ILE C C N N 221
ILE O O N N 222
ILE CB C N S 223
ILE CG1 C N N 224
ILE CG2 C N N 225
ILE CD1 C N N 226
ILE OXT O N N 227
ILE H H N N 228
ILE H2 H N N 229
ILE HA H N N 230
ILE HB H N N 231
ILE HG12 H N N 232
ILE HG13 H N N 233
ILE HG21 H N N 234
ILE HG22 H N N 235
ILE HG23 H N N 236
ILE HD11 H N N 237
ILE HD12 H N N 238
ILE HD13 H N N 239
ILE HXT H N N 240
LEU N N N N 241
LEU CA C N S 242
LEU C C N N 243
LEU O O N N 244
LEU CB C N N 245
LEU CG C N N 246
LEU CD1 C N N 247
LEU CD2 C N N 248
LEU OXT O N N 249
LEU H H N N 250
LEU H2 H N N 251
LEU HA H N N 252
LEU HB2 H N N 253
LEU HB3 H N N 254
LEU HG H N N 255
LEU HD11 H N N 256
LEU HD12 H N N 257
LEU HD13 H N N 258
LEU HD21 H N N 259
LEU HD22 H N N 260
LEU HD23 H N N 261
LEU HXT H N N 262
LYS N N N N 263
LYS CA C N S 264
LYS C C N N 265
LYS O O N N 266
LYS CB C N N 267
LYS CG C N N 268
LYS CD C N N 269
LYS CE C N N 270
LYS NZ N N N 271
LYS OXT O N N 272
LYS H H N N 273
LYS H2 H N N 274
LYS HA H N N 275
LYS HB2 H N N 276
LYS HB3 H N N 277
LYS HG2 H N N 278
LYS HG3 H N N 279
LYS HD2 H N N 280
LYS HD3 H N N 281
LYS HE2 H N N 282
LYS HE3 H N N 283
LYS HZ1 H N N 284
LYS HZ2 H N N 285
LYS HZ3 H N N 286
LYS HXT H N N 287
MET N N N N 288
MET CA C N S 289
MET C C N N 290
MET O O N N 291
MET CB C N N 292
MET CG C N N 293
MET SD S N N 294
MET CE C N N 295
MET OXT O N N 296
MET H H N N 297
MET H2 H N N 298
MET HA H N N 299
MET HB2 H N N 300
MET HB3 H N N 301
MET HG2 H N N 302
MET HG3 H N N 303
MET HE1 H N N 304
MET HE2 H N N 305
MET HE3 H N N 306
MET HXT H N N 307
NA NA NA N N 308
PHE N N N N 309
PHE CA C N S 310
PHE C C N N 311
PHE O O N N 312
PHE CB C N N 313
PHE CG C Y N 314
PHE CD1 C Y N 315
PHE CD2 C Y N 316
PHE CE1 C Y N 317
PHE CE2 C Y N 318
PHE CZ C Y N 319
PHE OXT O N N 320
PHE H H N N 321
PHE H2 H N N 322
PHE HA H N N 323
PHE HB2 H N N 324
PHE HB3 H N N 325
PHE HD1 H N N 326
PHE HD2 H N N 327
PHE HE1 H N N 328
PHE HE2 H N N 329
PHE HZ H N N 330
PHE HXT H N N 331
PRO N N N N 332
PRO CA C N S 333
PRO C C N N 334
PRO O O N N 335
PRO CB C N N 336
PRO CG C N N 337
PRO CD C N N 338
PRO OXT O N N 339
PRO H H N N 340
PRO HA H N N 341
PRO HB2 H N N 342
PRO HB3 H N N 343
PRO HG2 H N N 344
PRO HG3 H N N 345
PRO HD2 H N N 346
PRO HD3 H N N 347
PRO HXT H N N 348
SER N N N N 349
SER CA C N S 350
SER C C N N 351
SER O O N N 352
SER CB C N N 353
SER OG O N N 354
SER OXT O N N 355
SER H H N N 356
SER H2 H N N 357
SER HA H N N 358
SER HB2 H N N 359
SER HB3 H N N 360
SER HG H N N 361
SER HXT H N N 362
THR N N N N 363
THR CA C N S 364
THR C C N N 365
THR O O N N 366
THR CB C N R 367
THR OG1 O N N 368
THR CG2 C N N 369
THR OXT O N N 370
THR H H N N 371
THR H2 H N N 372
THR HA H N N 373
THR HB H N N 374
THR HG1 H N N 375
THR HG21 H N N 376
THR HG22 H N N 377
THR HG23 H N N 378
THR HXT H N N 379
TRP N N N N 380
TRP CA C N S 381
TRP C C N N 382
TRP O O N N 383
TRP CB C N N 384
TRP CG C Y N 385
TRP CD1 C Y N 386
TRP CD2 C Y N 387
TRP NE1 N Y N 388
TRP CE2 C Y N 389
TRP CE3 C Y N 390
TRP CZ2 C Y N 391
TRP CZ3 C Y N 392
TRP CH2 C Y N 393
TRP OXT O N N 394
TRP H H N N 395
TRP H2 H N N 396
TRP HA H N N 397
TRP HB2 H N N 398
TRP HB3 H N N 399
TRP HD1 H N N 400
TRP HE1 H N N 401
TRP HE3 H N N 402
TRP HZ2 H N N 403
TRP HZ3 H N N 404
TRP HH2 H N N 405
TRP HXT H N N 406
TYR N N N N 407
TYR CA C N S 408
TYR C C N N 409
TYR O O N N 410
TYR CB C N N 411
TYR CG C Y N 412
TYR CD1 C Y N 413
TYR CD2 C Y N 414
TYR CE1 C Y N 415
TYR CE2 C Y N 416
TYR CZ C Y N 417
TYR OH O N N 418
TYR OXT O N N 419
TYR H H N N 420
TYR H2 H N N 421
TYR HA H N N 422
TYR HB2 H N N 423
TYR HB3 H N N 424
TYR HD1 H N N 425
TYR HD2 H N N 426
TYR HE1 H N N 427
TYR HE2 H N N 428
TYR HH H N N 429
TYR HXT H N N 430
VAL N N N N 431
VAL CA C N S 432
VAL C C N N 433
VAL O O N N 434
VAL CB C N N 435
VAL CG1 C N N 436
VAL CG2 C N N 437
VAL OXT O N N 438
VAL H H N N 439
VAL H2 H N N 440
VAL HA H N N 441
VAL HB H N N 442
VAL HG11 H N N 443
VAL HG12 H N N 444
VAL HG13 H N N 445
VAL HG21 H N N 446
VAL HG22 H N N 447
VAL HG23 H N N 448
VAL HXT H N N 449
ZN ZN ZN N N 450
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
38R C4 C5 doub Y N 1
38R C4 N3 sing Y N 2
38R C4 N1G sing N N 3
38R C5 C6 sing Y N 4
38R C6 N1 doub Y N 5
38R N1 C2 sing Y N 6
38R N3 C2 doub Y N 7
38R C1U C1T sing N N 8
38R C1U C01 sing N N 9
38R C1T C1R sing N N 10
38R C1T C03 sing N N 11
38R C1R C1S sing Y N 12
38R C1R N1Q doub Y N 13
38R C1S C1H doub Y N 14
38R N1Q N1P sing Y N 15
38R N1P C1H sing Y N 16
38R C1H N1G sing N N 17
38R C1Y C01 sing N N 18
38R C1Y C03 sing N N 19
38R C2 N1I sing N N 20
38R N1I C1J sing N N 21
38R C1J C1O doub Y N 22
38R C1J C1K sing Y N 23
38R C1O C1N sing Y N 24
38R C1N C1M doub Y N 25
38R C1K C1L doub Y N 26
38R C1L C1M sing Y N 27
38R C1M C1V sing N N 28
38R C1V C1Z sing N N 29
38R C1Z N1A trip N N 30
38R C5 H5 sing N N 31
38R N1G H1G sing N N 32
38R C6 H6 sing N N 33
38R C1U H1U1 sing N N 34
38R C1U H1U2 sing N N 35
38R C1T H1T sing N N 36
38R C01 H011 sing N N 37
38R C01 H012 sing N N 38
38R C03 H031 sing N N 39
38R C03 H032 sing N N 40
38R C1S H1S sing N N 41
38R N1P H1P sing N N 42
38R C1Y H1Y1 sing N N 43
38R C1Y H1Y2 sing N N 44
38R N1I H1I sing N N 45
38R C1O H1O sing N N 46
38R C1K H1K sing N N 47
38R C1N H1N sing N N 48
38R C1L H1L sing N N 49
38R C1V H1V1 sing N N 50
38R C1V H1V2 sing N N 51
ALA N CA sing N N 52
ALA N H sing N N 53
ALA N H2 sing N N 54
ALA CA C sing N N 55
ALA CA CB sing N N 56
ALA CA HA sing N N 57
ALA C O doub N N 58
ALA C OXT sing N N 59
ALA CB HB1 sing N N 60
ALA CB HB2 sing N N 61
ALA CB HB3 sing N N 62
ALA OXT HXT sing N N 63
ARG N CA sing N N 64
ARG N H sing N N 65
ARG N H2 sing N N 66
ARG CA C sing N N 67
ARG CA CB sing N N 68
ARG CA HA sing N N 69
ARG C O doub N N 70
ARG C OXT sing N N 71
ARG CB CG sing N N 72
ARG CB HB2 sing N N 73
ARG CB HB3 sing N N 74
ARG CG CD sing N N 75
ARG CG HG2 sing N N 76
ARG CG HG3 sing N N 77
ARG CD NE sing N N 78
ARG CD HD2 sing N N 79
ARG CD HD3 sing N N 80
ARG NE CZ sing N N 81
ARG NE HE sing N N 82
ARG CZ NH1 sing N N 83
ARG CZ NH2 doub N N 84
ARG NH1 HH11 sing N N 85
ARG NH1 HH12 sing N N 86
ARG NH2 HH21 sing N N 87
ARG NH2 HH22 sing N N 88
ARG OXT HXT sing N N 89
ASN N CA sing N N 90
ASN N H sing N N 91
ASN N H2 sing N N 92
ASN CA C sing N N 93
ASN CA CB sing N N 94
ASN CA HA sing N N 95
ASN C O doub N N 96
ASN C OXT sing N N 97
ASN CB CG sing N N 98
ASN CB HB2 sing N N 99
ASN CB HB3 sing N N 100
ASN CG OD1 doub N N 101
ASN CG ND2 sing N N 102
ASN ND2 HD21 sing N N 103
ASN ND2 HD22 sing N N 104
ASN OXT HXT sing N N 105
ASP N CA sing N N 106
ASP N H sing N N 107
ASP N H2 sing N N 108
ASP CA C sing N N 109
ASP CA CB sing N N 110
ASP CA HA sing N N 111
ASP C O doub N N 112
ASP C OXT sing N N 113
ASP CB CG sing N N 114
ASP CB HB2 sing N N 115
ASP CB HB3 sing N N 116
ASP CG OD1 doub N N 117
ASP CG OD2 sing N N 118
ASP OD2 HD2 sing N N 119
ASP OXT HXT sing N N 120
CYS N CA sing N N 121
CYS N H sing N N 122
CYS N H2 sing N N 123
CYS CA C sing N N 124
CYS CA CB sing N N 125
CYS CA HA sing N N 126
CYS C O doub N N 127
CYS C OXT sing N N 128
CYS CB SG sing N N 129
CYS CB HB2 sing N N 130
CYS CB HB3 sing N N 131
CYS SG HG sing N N 132
CYS OXT HXT sing N N 133
EDO C1 O1 sing N N 134
EDO C1 C2 sing N N 135
EDO C1 H11 sing N N 136
EDO C1 H12 sing N N 137
EDO O1 HO1 sing N N 138
EDO C2 O2 sing N N 139
EDO C2 H21 sing N N 140
EDO C2 H22 sing N N 141
EDO O2 HO2 sing N N 142
GLN N CA sing N N 143
GLN N H sing N N 144
GLN N H2 sing N N 145
GLN CA C sing N N 146
GLN CA CB sing N N 147
GLN CA HA sing N N 148
GLN C O doub N N 149
GLN C OXT sing N N 150
GLN CB CG sing N N 151
GLN CB HB2 sing N N 152
GLN CB HB3 sing N N 153
GLN CG CD sing N N 154
GLN CG HG2 sing N N 155
GLN CG HG3 sing N N 156
GLN CD OE1 doub N N 157
GLN CD NE2 sing N N 158
GLN NE2 HE21 sing N N 159
GLN NE2 HE22 sing N N 160
GLN OXT HXT sing N N 161
GLU N CA sing N N 162
GLU N H sing N N 163
GLU N H2 sing N N 164
GLU CA C sing N N 165
GLU CA CB sing N N 166
GLU CA HA sing N N 167
GLU C O doub N N 168
GLU C OXT sing N N 169
GLU CB CG sing N N 170
GLU CB HB2 sing N N 171
GLU CB HB3 sing N N 172
GLU CG CD sing N N 173
GLU CG HG2 sing N N 174
GLU CG HG3 sing N N 175
GLU CD OE1 doub N N 176
GLU CD OE2 sing N N 177
GLU OE2 HE2 sing N N 178
GLU OXT HXT sing N N 179
GLY N CA sing N N 180
GLY N H sing N N 181
GLY N H2 sing N N 182
GLY CA C sing N N 183
GLY CA HA2 sing N N 184
GLY CA HA3 sing N N 185
GLY C O doub N N 186
GLY C OXT sing N N 187
GLY OXT HXT sing N N 188
HIS N CA sing N N 189
HIS N H sing N N 190
HIS N H2 sing N N 191
HIS CA C sing N N 192
HIS CA CB sing N N 193
HIS CA HA sing N N 194
HIS C O doub N N 195
HIS C OXT sing N N 196
HIS CB CG sing N N 197
HIS CB HB2 sing N N 198
HIS CB HB3 sing N N 199
HIS CG ND1 sing Y N 200
HIS CG CD2 doub Y N 201
HIS ND1 CE1 doub Y N 202
HIS ND1 HD1 sing N N 203
HIS CD2 NE2 sing Y N 204
HIS CD2 HD2 sing N N 205
HIS CE1 NE2 sing Y N 206
HIS CE1 HE1 sing N N 207
HIS NE2 HE2 sing N N 208
HIS OXT HXT sing N N 209
HOH O H1 sing N N 210
HOH O H2 sing N N 211
ILE N CA sing N N 212
ILE N H sing N N 213
ILE N H2 sing N N 214
ILE CA C sing N N 215
ILE CA CB sing N N 216
ILE CA HA sing N N 217
ILE C O doub N N 218
ILE C OXT sing N N 219
ILE CB CG1 sing N N 220
ILE CB CG2 sing N N 221
ILE CB HB sing N N 222
ILE CG1 CD1 sing N N 223
ILE CG1 HG12 sing N N 224
ILE CG1 HG13 sing N N 225
ILE CG2 HG21 sing N N 226
ILE CG2 HG22 sing N N 227
ILE CG2 HG23 sing N N 228
ILE CD1 HD11 sing N N 229
ILE CD1 HD12 sing N N 230
ILE CD1 HD13 sing N N 231
ILE OXT HXT sing N N 232
LEU N CA sing N N 233
LEU N H sing N N 234
LEU N H2 sing N N 235
LEU CA C sing N N 236
LEU CA CB sing N N 237
LEU CA HA sing N N 238
LEU C O doub N N 239
LEU C OXT sing N N 240
LEU CB CG sing N N 241
LEU CB HB2 sing N N 242
LEU CB HB3 sing N N 243
LEU CG CD1 sing N N 244
LEU CG CD2 sing N N 245
LEU CG HG sing N N 246
LEU CD1 HD11 sing N N 247
LEU CD1 HD12 sing N N 248
LEU CD1 HD13 sing N N 249
LEU CD2 HD21 sing N N 250
LEU CD2 HD22 sing N N 251
LEU CD2 HD23 sing N N 252
LEU OXT HXT sing N N 253
LYS N CA sing N N 254
LYS N H sing N N 255
LYS N H2 sing N N 256
LYS CA C sing N N 257
LYS CA CB sing N N 258
LYS CA HA sing N N 259
LYS C O doub N N 260
LYS C OXT sing N N 261
LYS CB CG sing N N 262
LYS CB HB2 sing N N 263
LYS CB HB3 sing N N 264
LYS CG CD sing N N 265
LYS CG HG2 sing N N 266
LYS CG HG3 sing N N 267
LYS CD CE sing N N 268
LYS CD HD2 sing N N 269
LYS CD HD3 sing N N 270
LYS CE NZ sing N N 271
LYS CE HE2 sing N N 272
LYS CE HE3 sing N N 273
LYS NZ HZ1 sing N N 274
LYS NZ HZ2 sing N N 275
LYS NZ HZ3 sing N N 276
LYS OXT HXT sing N N 277
MET N CA sing N N 278
MET N H sing N N 279
MET N H2 sing N N 280
MET CA C sing N N 281
MET CA CB sing N N 282
MET CA HA sing N N 283
MET C O doub N N 284
MET C OXT sing N N 285
MET CB CG sing N N 286
MET CB HB2 sing N N 287
MET CB HB3 sing N N 288
MET CG SD sing N N 289
MET CG HG2 sing N N 290
MET CG HG3 sing N N 291
MET SD CE sing N N 292
MET CE HE1 sing N N 293
MET CE HE2 sing N N 294
MET CE HE3 sing N N 295
MET OXT HXT sing N N 296
PHE N CA sing N N 297
PHE N H sing N N 298
PHE N H2 sing N N 299
PHE CA C sing N N 300
PHE CA CB sing N N 301
PHE CA HA sing N N 302
PHE C O doub N N 303
PHE C OXT sing N N 304
PHE CB CG sing N N 305
PHE CB HB2 sing N N 306
PHE CB HB3 sing N N 307
PHE CG CD1 doub Y N 308
PHE CG CD2 sing Y N 309
PHE CD1 CE1 sing Y N 310
PHE CD1 HD1 sing N N 311
PHE CD2 CE2 doub Y N 312
PHE CD2 HD2 sing N N 313
PHE CE1 CZ doub Y N 314
PHE CE1 HE1 sing N N 315
PHE CE2 CZ sing Y N 316
PHE CE2 HE2 sing N N 317
PHE CZ HZ sing N N 318
PHE OXT HXT sing N N 319
PRO N CA sing N N 320
PRO N CD sing N N 321
PRO N H sing N N 322
PRO CA C sing N N 323
PRO CA CB sing N N 324
PRO CA HA sing N N 325
PRO C O doub N N 326
PRO C OXT sing N N 327
PRO CB CG sing N N 328
PRO CB HB2 sing N N 329
PRO CB HB3 sing N N 330
PRO CG CD sing N N 331
PRO CG HG2 sing N N 332
PRO CG HG3 sing N N 333
PRO CD HD2 sing N N 334
PRO CD HD3 sing N N 335
PRO OXT HXT sing N N 336
SER N CA sing N N 337
SER N H sing N N 338
SER N H2 sing N N 339
SER CA C sing N N 340
SER CA CB sing N N 341
SER CA HA sing N N 342
SER C O doub N N 343
SER C OXT sing N N 344
SER CB OG sing N N 345
SER CB HB2 sing N N 346
SER CB HB3 sing N N 347
SER OG HG sing N N 348
SER OXT HXT sing N N 349
THR N CA sing N N 350
THR N H sing N N 351
THR N H2 sing N N 352
THR CA C sing N N 353
THR CA CB sing N N 354
THR CA HA sing N N 355
THR C O doub N N 356
THR C OXT sing N N 357
THR CB OG1 sing N N 358
THR CB CG2 sing N N 359
THR CB HB sing N N 360
THR OG1 HG1 sing N N 361
THR CG2 HG21 sing N N 362
THR CG2 HG22 sing N N 363
THR CG2 HG23 sing N N 364
THR OXT HXT sing N N 365
TRP N CA sing N N 366
TRP N H sing N N 367
TRP N H2 sing N N 368
TRP CA C sing N N 369
TRP CA CB sing N N 370
TRP CA HA sing N N 371
TRP C O doub N N 372
TRP C OXT sing N N 373
TRP CB CG sing N N 374
TRP CB HB2 sing N N 375
TRP CB HB3 sing N N 376
TRP CG CD1 doub Y N 377
TRP CG CD2 sing Y N 378
TRP CD1 NE1 sing Y N 379
TRP CD1 HD1 sing N N 380
TRP CD2 CE2 doub Y N 381
TRP CD2 CE3 sing Y N 382
TRP NE1 CE2 sing Y N 383
TRP NE1 HE1 sing N N 384
TRP CE2 CZ2 sing Y N 385
TRP CE3 CZ3 doub Y N 386
TRP CE3 HE3 sing N N 387
TRP CZ2 CH2 doub Y N 388
TRP CZ2 HZ2 sing N N 389
TRP CZ3 CH2 sing Y N 390
TRP CZ3 HZ3 sing N N 391
TRP CH2 HH2 sing N N 392
TRP OXT HXT sing N N 393
TYR N CA sing N N 394
TYR N H sing N N 395
TYR N H2 sing N N 396
TYR CA C sing N N 397
TYR CA CB sing N N 398
TYR CA HA sing N N 399
TYR C O doub N N 400
TYR C OXT sing N N 401
TYR CB CG sing N N 402
TYR CB HB2 sing N N 403
TYR CB HB3 sing N N 404
TYR CG CD1 doub Y N 405
TYR CG CD2 sing Y N 406
TYR CD1 CE1 sing Y N 407
TYR CD1 HD1 sing N N 408
TYR CD2 CE2 doub Y N 409
TYR CD2 HD2 sing N N 410
TYR CE1 CZ doub Y N 411
TYR CE1 HE1 sing N N 412
TYR CE2 CZ sing Y N 413
TYR CE2 HE2 sing N N 414
TYR CZ OH sing N N 415
TYR OH HH sing N N 416
TYR OXT HXT sing N N 417
VAL N CA sing N N 418
VAL N H sing N N 419
VAL N H2 sing N N 420
VAL CA C sing N N 421
VAL CA CB sing N N 422
VAL CA HA sing N N 423
VAL C O doub N N 424
VAL C OXT sing N N 425
VAL CB CG1 sing N N 426
VAL CB CG2 sing N N 427
VAL CB HB sing N N 428
VAL CG1 HG11 sing N N 429
VAL CG1 HG12 sing N N 430
VAL CG1 HG13 sing N N 431
VAL CG2 HG21 sing N N 432
VAL CG2 HG22 sing N N 433
VAL CG2 HG23 sing N N 434
VAL OXT HXT sing N N 435
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 '[4-({4-[(3-cyclopentyl-1H-pyrazol-5-yl)amino]pyrimidin-2-yl}amino)phenyl]acetonitrile' 38R
3 'ZINC ION' ZN
4 'SODIUM ION' NA
5 1,2-ETHANEDIOL EDO
6 water HOH
#
loop_
_pdbx_initial_refinement_model.id
_pdbx_initial_refinement_model.entity_id_list
_pdbx_initial_refinement_model.type
_pdbx_initial_refinement_model.source_name
_pdbx_initial_refinement_model.accession_code
_pdbx_initial_refinement_model.details
1 ? 'experimental model' PDB 4AGU 'ENSEMBLE OF PDB ENTRIES 4AGU AND 4AAA'
2 ? 'experimental model' PDB 4AAA 'ENSEMBLE OF PDB ENTRIES 4AGU AND 4AAA'
#