HEADER OXIDOREDUCTASE 03-DEC-12 3ZE8 TITLE 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS TITLE 2 HILDENBOROUGH IN THE REDUCED STATE AT 1.95 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 35-317; COMPND 5 EC: 1.12.7.2; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, COMPND 8 SELENOCYSTEINE-CONTAINING; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 12-495; COMPND 11 EC: 1.12.7.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 7 ORGANISM_TAXID: 882; SOURCE 8 STRAIN: HILDENBOROUGH KEYWDS OXIDOREDUCTASE, HYDROGENASE BIOHYDROGEN OXYGEN TOLERANCE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.MARQUES,R.COELHO,I.A.C.PEREIRA,P.M.MATIAS REVDAT 8 20-DEC-23 3ZE8 1 LINK REVDAT 7 03-JUN-20 3ZE8 1 REMARK HELIX SHEET LINK REVDAT 7 2 1 SITE REVDAT 6 15-MAY-19 3ZE8 1 REMARK REVDAT 5 24-APR-19 3ZE8 1 REMARK SEQRES LINK REVDAT 4 23-JAN-19 3ZE8 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL SITE ATOM REVDAT 3 05-NOV-14 3ZE8 1 REMARK SEQRES MODRES HET REVDAT 3 2 1 HETNAM HETSYN FORMUL HELIX REVDAT 3 3 1 LINK SITE HETATM ANISOU REVDAT 3 4 1 CONECT MASTER REVDAT 2 19-FEB-14 3ZE8 1 JRNL SEQADV SEQRES MODRES REVDAT 2 2 1 HET HETNAM FORMUL LINK REVDAT 2 3 1 SITE HETATM ANISOU ATOM REVDAT 2 4 1 CONECT REVDAT 1 12-JUN-13 3ZE8 0 JRNL AUTH M.C.MARQUES,R.COELHO,I.A.C.PEREIRA,P.M.MATIAS JRNL TITL REDOX STATE-DEPENDENT CHANGES IN THE CRYSTAL STRUCTURE OF JRNL TITL 2 [NIFESE] HYDROGENASE FROM DESULFOVIBRIO VULGARIS JRNL TITL 3 HILDENBOROUGH JRNL REF INT.J.HYDROGEN ENERGY V. 38 8664 2013 JRNL REFN ISSN 0360-3199 JRNL DOI 10.1016/J.IJHYDENE.2013.04.132 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.MARQUES,R.COELHO,A.L.DE LACEY,I.A.C.PEREIRA,P.M.MATIAS REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF [NIFESE] HYDROGENASE FROM REMARK 1 TITL 2 DESULFOVIBRIO VULGARIS HILDENBOROUGH: A HYDROGENASE WITHOUT REMARK 1 TITL 3 A BRIDGING LIGAND IN THE ACTIVE SITE IN ITS OXIDISED, REMARK 1 TITL 4 "AS-ISOLATED" STATE. REMARK 1 REF J.MOL.BIOL. V. 396 893 2010 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 20026074 REMARK 1 DOI 10.1016/J.JMB.2009.12.013 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.240 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 64166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1529 - 5.5923 0.83 3471 149 0.1426 0.1844 REMARK 3 2 5.5923 - 4.4401 0.85 3489 217 0.1176 0.1388 REMARK 3 3 4.4401 - 3.8792 0.86 3588 168 0.1071 0.1173 REMARK 3 4 3.8792 - 3.5247 0.87 3580 209 0.1202 0.1288 REMARK 3 5 3.5247 - 3.2722 0.87 3592 218 0.1282 0.1381 REMARK 3 6 3.2722 - 3.0793 0.88 3638 190 0.1327 0.1509 REMARK 3 7 3.0793 - 2.9251 0.88 3686 182 0.1350 0.1592 REMARK 3 8 2.9251 - 2.7978 0.89 3663 179 0.1338 0.1801 REMARK 3 9 2.7978 - 2.6901 0.89 3694 206 0.1292 0.1851 REMARK 3 10 2.6901 - 2.5973 0.90 3737 182 0.1322 0.1784 REMARK 3 11 2.5973 - 2.5161 0.90 3730 193 0.1233 0.1724 REMARK 3 12 2.5161 - 2.4442 0.91 3750 186 0.1287 0.1581 REMARK 3 13 2.4442 - 2.3798 0.90 3692 204 0.1266 0.1689 REMARK 3 14 2.3798 - 2.3218 0.91 3810 212 0.1349 0.1663 REMARK 3 15 2.3218 - 2.2690 0.91 3762 195 0.1326 0.1659 REMARK 3 16 2.2690 - 2.2207 0.91 3687 218 0.1444 0.1762 REMARK 3 17 2.2207 - 2.1763 0.92 3795 207 0.1302 0.1809 REMARK 3 18 2.1763 - 2.1352 0.91 3804 192 0.1316 0.1514 REMARK 3 19 2.1352 - 2.0971 0.92 3809 177 0.1371 0.1950 REMARK 3 20 2.0971 - 2.0616 0.92 3796 191 0.1411 0.1697 REMARK 3 21 2.0616 - 2.0283 0.91 3776 213 0.1382 0.1726 REMARK 3 22 2.0283 - 1.9971 0.93 3854 166 0.1407 0.1798 REMARK 3 23 1.9971 - 1.9677 0.92 3738 242 0.1511 0.2011 REMARK 3 24 1.9677 - 1.9400 0.93 3909 190 0.1481 0.1689 REMARK 3 25 1.9400 - 1.9138 0.91 3745 204 0.1657 0.2027 REMARK 3 26 1.9138 - 1.8889 0.93 3832 214 0.1714 0.2104 REMARK 3 27 1.8889 - 1.8653 0.93 3839 232 0.1699 0.2099 REMARK 3 28 1.8653 - 1.8428 0.93 3741 229 0.1770 0.2364 REMARK 3 29 1.8428 - 1.8214 0.93 3920 206 0.1845 0.1881 REMARK 3 30 1.8214 - 1.8010 0.90 3668 182 0.2002 0.2443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6170 REMARK 3 ANGLE : 1.104 8345 REMARK 3 CHIRALITY : 0.074 907 REMARK 3 PLANARITY : 0.005 1078 REMARK 3 DIHEDRAL : 13.827 2320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 7:32) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1211 -24.0170 37.0186 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1427 REMARK 3 T33: 0.0807 T12: -0.0057 REMARK 3 T13: 0.0065 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.7978 L22: 1.4223 REMARK 3 L33: 0.4025 L12: -0.4964 REMARK 3 L13: 0.2221 L23: -0.3901 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.2987 S13: 0.0550 REMARK 3 S21: 0.2806 S22: 0.0570 S23: -0.0078 REMARK 3 S31: -0.0391 S32: -0.0025 S33: -0.0410 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 33:97) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0181 -29.2525 33.8116 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1165 REMARK 3 T33: 0.1005 T12: 0.0298 REMARK 3 T13: -0.0021 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.4004 L22: 1.2711 REMARK 3 L33: 0.9506 L12: 0.5799 REMARK 3 L13: 0.5138 L23: -0.1837 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.1289 S13: -0.0190 REMARK 3 S21: 0.1570 S22: 0.0439 S23: -0.0712 REMARK 3 S31: -0.0499 S32: 0.0729 S33: -0.0316 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 98:181) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9433 -36.0642 36.4826 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1065 REMARK 3 T33: 0.0950 T12: -0.0005 REMARK 3 T13: -0.0064 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.1037 L22: 0.7768 REMARK 3 L33: 0.4401 L12: -0.2057 REMARK 3 L13: 0.0818 L23: -0.0569 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.1621 S13: -0.0879 REMARK 3 S21: 0.1369 S22: 0.0322 S23: -0.0517 REMARK 3 S31: 0.0041 S32: 0.0257 S33: -0.0090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 182:283) REMARK 3 ORIGIN FOR THE GROUP (A): -38.0323 -30.1181 36.3248 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1096 REMARK 3 T33: 0.1027 T12: -0.0112 REMARK 3 T13: 0.0376 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9098 L22: 0.9107 REMARK 3 L33: 0.5509 L12: -0.0226 REMARK 3 L13: -0.0600 L23: 0.0568 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.1496 S13: -0.0790 REMARK 3 S21: 0.1829 S22: 0.0113 S23: 0.1060 REMARK 3 S31: 0.0352 S32: -0.0550 S33: -0.0051 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 284) REMARK 3 ORIGIN FOR THE GROUP (A): -45.9977 -29.3006 34.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.1567 REMARK 3 T33: 0.1871 T12: -0.0035 REMARK 3 T13: 0.0520 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.9204 L22: 2.7744 REMARK 3 L33: 6.7020 L12: 0.7916 REMARK 3 L13: -4.4520 L23: 1.1755 REMARK 3 S TENSOR REMARK 3 S11: -0.1166 S12: -0.3855 S13: -0.1120 REMARK 3 S21: -0.1040 S22: -0.0119 S23: 0.0228 REMARK 3 S31: 0.0609 S32: 0.1109 S33: 0.1310 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 285) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6134 -27.5901 33.9758 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1572 REMARK 3 T33: 0.1492 T12: -0.0046 REMARK 3 T13: 0.0207 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 5.0471 L22: 3.9842 REMARK 3 L33: 2.0862 L12: 4.4665 REMARK 3 L13: 1.9335 L23: 1.9167 REMARK 3 S TENSOR REMARK 3 S11: 0.1376 S12: -0.1151 S13: 0.2394 REMARK 3 S21: -0.0864 S22: -0.1430 S23: -0.0153 REMARK 3 S31: 0.1489 S32: -0.0713 S33: -0.0100 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 286) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9570 -28.8416 28.7182 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1356 REMARK 3 T33: 0.1315 T12: 0.0142 REMARK 3 T13: 0.0181 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.6650 L22: 4.6298 REMARK 3 L33: 6.4625 L12: -0.5996 REMARK 3 L13: 3.0461 L23: -4.7184 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0248 S13: 0.0762 REMARK 3 S21: 0.0621 S22: 0.0826 S23: -0.2046 REMARK 3 S31: 0.1250 S32: 0.1067 S33: -0.0712 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 15:40) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3057 -21.8525 18.4184 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.1010 REMARK 3 T33: 0.1051 T12: 0.0006 REMARK 3 T13: 0.0116 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 1.7086 L22: 1.9533 REMARK 3 L33: 1.3233 L12: 0.7565 REMARK 3 L13: -0.3012 L23: -0.3884 REMARK 3 S TENSOR REMARK 3 S11: -0.1356 S12: 0.0806 S13: -0.1833 REMARK 3 S21: -0.0937 S22: 0.0671 S23: -0.2685 REMARK 3 S31: 0.1095 S32: 0.1694 S33: 0.0890 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 41:60) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3829 -28.1213 14.0014 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.0706 REMARK 3 T33: 0.0494 T12: -0.0030 REMARK 3 T13: 0.0102 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 5.6596 L22: 2.5414 REMARK 3 L33: 0.4785 L12: 2.9356 REMARK 3 L13: -1.2287 L23: -0.9921 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: 0.1767 S13: -0.2701 REMARK 3 S21: -0.0914 S22: 0.0659 S23: -0.1012 REMARK 3 S31: 0.0146 S32: 0.0106 S33: 0.0438 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 61:220) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7369 -12.2324 27.4084 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.0763 REMARK 3 T33: 0.0752 T12: 0.0068 REMARK 3 T13: 0.0139 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.7207 L22: 0.4100 REMARK 3 L33: 0.3045 L12: 0.1957 REMARK 3 L13: 0.1358 L23: 0.0499 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0721 S13: 0.0757 REMARK 3 S21: 0.0788 S22: -0.0088 S23: 0.0281 REMARK 3 S31: -0.0422 S32: -0.0283 S33: -0.0041 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 221:495) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1468 -13.1125 11.7732 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.0715 REMARK 3 T33: 0.0520 T12: -0.0009 REMARK 3 T13: 0.0030 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5027 L22: 0.4553 REMARK 3 L33: 0.2898 L12: 0.0779 REMARK 3 L13: -0.0020 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0598 S13: 0.0394 REMARK 3 S21: -0.0315 S22: 0.0132 S23: 0.0038 REMARK 3 S31: -0.0076 S32: -0.0043 S33: -0.0020 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 500:501) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8569 -18.8027 18.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.1593 REMARK 3 T33: 0.1628 T12: 0.0163 REMARK 3 T13: 0.0280 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 4.0666 L22: 4.5968 REMARK 3 L33: 3.4895 L12: 4.3195 REMARK 3 L13: -3.7665 L23: -3.9980 REMARK 3 S TENSOR REMARK 3 S11: -0.1388 S12: -0.2979 S13: -0.7764 REMARK 3 S21: 0.1727 S22: 0.1302 S23: 0.2639 REMARK 3 S31: 0.4533 S32: -0.0578 S33: 0.0245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT PROTOCOL USED SEPARATE REMARK 3 FRIEDEL PAIRS. TOTAL NUMBER OF NON-ANOMALOUS REFLECTIONS 64168 REMARK 4 REMARK 4 3ZE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290054980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WPN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN USING THE SITTING REMARK 280 -DROP VAPOR DIFFUSION METHOD AT 20C BY MIXING 1.5 UL OF REMARK 280 RESERVOIR SOLUTION CONTAINING 20% POLYETHYLENE GLYCOL (PEG) 1500, REMARK 280 0.1 M TRIS-HCL, PH 8.5 AND AN EQUAL VOLUME OF A SOLUTION REMARK 280 COMPOSED OF 10 MG/ML OF PROTEIN IN 10 MM TRIS-HCL BUFFER AT PH REMARK 280 7.6., PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.11350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.67400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.81600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.67400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.11350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.81600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 THR B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 249 O HOH A 2189 2.07 REMARK 500 O HOH B 2256 O HOH B 2359 2.12 REMARK 500 O HOH B 2263 O HOH B 2282 2.14 REMARK 500 O HOH B 2078 O HOH B 2079 2.16 REMARK 500 O HOH A 2101 O HOH B 2014 2.18 REMARK 500 O HOH B 2032 O HOH B 2341 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 19 -1.02 75.78 REMARK 500 HIS A 46 111.74 -160.77 REMARK 500 HIS A 96 -8.24 78.88 REMARK 500 GLU A 249 -62.18 -98.54 REMARK 500 LYS A 251 -158.16 53.41 REMARK 500 ALA A 263 -106.56 -155.74 REMARK 500 HIS B 185 77.67 72.72 REMARK 500 PHE B 251 77.11 65.62 REMARK 500 LYS B 258 -78.83 -90.18 REMARK 500 TYR B 313 13.75 -143.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2047 DISTANCE = 5.87 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C15 A 1284 REMARK 610 C15 A 1285 REMARK 610 C15 A 1286 REMARK 610 C15 B 1496 REMARK 610 C15 B 1497 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 SF4 A 286 S2 102.8 REMARK 620 3 SF4 A 286 S3 122.4 107.5 REMARK 620 4 SF4 A 286 S4 114.0 105.7 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 SF4 A 286 S1 108.9 REMARK 620 3 SF4 A 286 S2 120.7 101.4 REMARK 620 4 SF4 A 286 S3 112.9 102.4 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 121 SG REMARK 620 2 SF4 A 286 S1 111.9 REMARK 620 3 SF4 A 286 S3 131.6 101.9 REMARK 620 4 SF4 A 286 S4 96.9 108.8 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 159 SG REMARK 620 2 SF4 A 286 S1 113.9 REMARK 620 3 SF4 A 286 S2 124.0 101.9 REMARK 620 4 SF4 A 286 S4 102.4 108.2 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 208 ND1 REMARK 620 2 SF4 A 284 S1 103.4 REMARK 620 3 SF4 A 284 S3 118.0 105.5 REMARK 620 4 SF4 A 284 S4 118.5 105.8 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 211 SG REMARK 620 2 SF4 A 284 S1 113.9 REMARK 620 3 SF4 A 284 S2 118.3 104.3 REMARK 620 4 SF4 A 284 S3 107.6 105.4 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 232 SG REMARK 620 2 SF4 A 284 S1 118.5 REMARK 620 3 SF4 A 284 S2 120.6 104.3 REMARK 620 4 SF4 A 284 S4 101.8 106.3 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 238 SG REMARK 620 2 SF4 A 284 S2 115.7 REMARK 620 3 SF4 A 284 S3 110.4 106.4 REMARK 620 4 SF4 A 284 S4 115.5 103.5 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 247 SG REMARK 620 2 SF4 A 285 S1 113.1 REMARK 620 3 SF4 A 285 S2 104.3 106.4 REMARK 620 4 SF4 A 285 S3 124.1 104.1 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 259 SG REMARK 620 2 SF4 A 285 S1 109.8 REMARK 620 3 SF4 A 285 S2 114.5 106.3 REMARK 620 4 SF4 A 285 S4 115.5 105.1 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 265 SG REMARK 620 2 SF4 A 285 S1 112.1 REMARK 620 3 SF4 A 285 S3 117.3 104.7 REMARK 620 4 SF4 A 285 S4 112.1 105.7 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 268 SG REMARK 620 2 SF4 A 285 S2 107.7 REMARK 620 3 SF4 A 285 S3 120.0 104.0 REMARK 620 4 SF4 A 285 S4 114.5 105.0 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 56 OE2 REMARK 620 2 ILE B 441 O 93.2 REMARK 620 3 HIS B 495 NE2 91.6 87.1 REMARK 620 4 HOH B2046 O 89.3 176.3 90.2 REMARK 620 5 HOH B2047 O 85.0 90.5 175.6 92.4 REMARK 620 6 HOH B2253 O 172.3 88.0 96.1 89.8 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS B 75 SG REMARK 620 2 CYS B 78 SG 104.8 REMARK 620 3 PSW B 489 SD 125.9 90.3 REMARK 620 4 CYS B 492 SG 104.1 73.0 129.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FCO B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 78 SG REMARK 620 2 FCO B 500 C1 161.2 REMARK 620 3 FCO B 500 C2 93.6 90.8 REMARK 620 4 FCO B 500 C3 106.3 91.5 94.9 REMARK 620 5 CYS B 492 SG 81.0 92.1 170.9 93.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C15 A 1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C15 A 1285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C15 A 1286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FCO B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C15 B 1496 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C15 B 1497 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZE6 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE AS-ISOLATED OXIDIZED STATE AT 1.50 ANGSTROMS REMARK 900 RELATED ID: 3ZE7 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE REDUCED STATE AT 1.95 ANGSTROMS REMARK 900 RELATED ID: 3ZE9 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NIFESE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE OXIDIZED AS-ISOLATED STATE AT 1.33 ANGSTROMS REMARK 900 RELATED ID: 3ZEA RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NIFESE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE REDUCED STATE AT 1.82 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 SIGNAL PEPTIDE CLEAVED OFF MATURE PROTEIN DBREF 3ZE8 A 1 283 UNP Q72AS4 Q72AS4_DESVH 35 317 DBREF 3ZE8 B 12 495 UNP Q72AS3 Q72AS3_DESVH 12 495 SEQADV 3ZE8 PSW B 489 UNP Q72AS3 SEC 489 MICROHETEROGENEITY SEQRES 1 A 283 GLY THR LEU THR GLY GLU ARG PRO PRO VAL PHE TRP LEU SEQRES 2 A 283 GLN GLY GLN GLY CYS THR GLY CYS SER VAL THR LEU LEU SEQRES 3 A 283 ASN SER VAL HIS PRO SER ILE ALA ASP VAL LEU LEU LYS SEQRES 4 A 283 VAL ILE SER LEU GLU PHE HIS PRO THR VAL MET ALA TRP SEQRES 5 A 283 GLU GLY GLU HIS ALA ILE GLU HIS MET ARG LYS VAL ALA SEQRES 6 A 283 GLU LYS PHE LYS GLY LYS PHE PHE LEU VAL ILE GLU GLY SEQRES 7 A 283 SER VAL PRO VAL GLU ALA ASP GLY LYS TYR CYS ILE ILE SEQRES 8 A 283 GLY GLU ALA ASN HIS HIS GLU ILE SER MET VAL ASP ALA SEQRES 9 A 283 LEU LYS GLU PHE GLY PRO ASN ALA ALA ALA VAL LEU ALA SEQRES 10 A 283 VAL GLY THR CYS ALA ALA TYR GLY GLY ILE PRO ALA ALA SEQRES 11 A 283 GLU GLY SER GLU THR GLY ALA THR ALA VAL SER LYS PHE SEQRES 12 A 283 LEU GLY ASP ASN GLY ILE LYS THR PRO VAL VAL ASN ILE SEQRES 13 A 283 PRO GLY CYS PRO PRO HIS PRO ASP TRP ILE VAL GLY THR SEQRES 14 A 283 VAL VAL LEU ALA LEU ASP ALA ILE LYS LYS ASN GLY LEU SEQRES 15 A 283 GLU GLY GLY LEU ALA GLU VAL VAL LYS VAL LEU ASP SER SEQRES 16 A 283 ASP GLY ARG PRO THR PRO PHE PHE GLY ARG ASN ILE HIS SEQRES 17 A 283 GLU ASN CYS PRO TYR LEU ASP LYS TYR ASP GLU GLY VAL SEQRES 18 A 283 MET SER ALA THR PHE THR ASP LYS VAL GLY CYS ARG TYR SEQRES 19 A 283 ASP LEU GLY CYS LYS GLY PRO MET THR MET ALA ASP CYS SEQRES 20 A 283 PHE GLU ARG LYS TRP ASN GLY GLY VAL ASN TRP CYS VAL SEQRES 21 A 283 GLN ASN ALA VAL CYS ILE GLY CYS VAL GLU PRO ASP PHE SEQRES 22 A 283 PRO ASP GLY LYS SER PRO PHE TYR GLN ALA SEQRES 1 B 484 GLY ALA THR GLY ARG THR THR ILE ALA ILE ASP PRO VAL SEQRES 2 B 484 THR ARG ILE GLU GLY HIS LEU LYS ALA GLU VAL VAL VAL SEQRES 3 B 484 GLU ASN GLY LYS VAL VAL ASP ALA ARG LEU SER GLY GLY SEQRES 4 B 484 MET TYR ARG GLY PHE GLU THR ILE LEU ARG GLY ARG ASP SEQRES 5 B 484 PRO ARG ASP ALA SER GLN ILE VAL GLN ARG ILE OCS GLY SEQRES 6 B 484 VAL CYS PRO THR ALA HIS SER THR ALA SER VAL LEU ALA SEQRES 7 B 484 LEU ASP GLU ALA PHE GLY ALA LYS VAL PRO ASN ASN GLY SEQRES 8 B 484 ARG ILE THR ARG ASN LEU ILE PHE GLY ALA ASN TYR LEU SEQRES 9 B 484 GLN SER HIS ILE LEU HIS PHE TYR HIS LEU SER ALA GLN SEQRES 10 B 484 ASP PHE VAL GLN GLY PRO ASP THR ALA PRO PHE VAL PRO SEQRES 11 B 484 ARG PHE PRO LYS SER ASP LEU ARG LEU SER LYS GLU LEU SEQRES 12 B 484 ASN LYS ALA GLY VAL ASP GLN TYR ILE GLU ALA LEU GLU SEQRES 13 B 484 VAL ARG ARG ILE CYS HIS GLU MET VAL ALA LEU PHE GLY SEQRES 14 B 484 GLY ARG MET PRO HIS VAL GLN GLY GLN VAL VAL GLY GLY SEQRES 15 B 484 ALA THR GLU ILE PRO THR LYS GLU LYS LEU VAL GLU TYR SEQRES 16 B 484 ALA ALA ARG PHE LYS LYS VAL ARG ASP PHE VAL GLU GLN SEQRES 17 B 484 LYS TYR VAL PRO VAL VAL TYR THR ILE GLY SER LYS TYR SEQRES 18 B 484 LYS ASP MET PHE LYS VAL GLY GLN GLY PHE LYS ALA ALA SEQRES 19 B 484 LEU CYS VAL GLY ALA PHE PRO LEU ASP ASN SER GLY LYS SEQRES 20 B 484 LYS HIS LEU PHE MET PRO GLY VAL TYR ALA LYS GLY LYS SEQRES 21 B 484 ASP MET PRO PHE ASP PRO SER LYS ILE LYS GLU TYR VAL SEQRES 22 B 484 LYS TYR SER TRP PHE ALA GLU GLU THR THR GLY LEU ASN SEQRES 23 B 484 TYR LYS GLU GLY LYS THR ILE PRO ALA PRO ASP LYS ALA SEQRES 24 B 484 GLY ALA TYR SER PHE VAL LYS ALA PRO ARG TYR ASP GLY SEQRES 25 B 484 LEU SER LEU GLU VAL GLY PRO LEU ALA ARG MET TRP VAL SEQRES 26 B 484 ASN ASN PRO GLU LEU SER PRO VAL GLY LYS LYS LEU LEU SEQRES 27 B 484 LYS ASP LEU PHE GLY ILE SER ALA LYS LYS PHE ARG ASP SEQRES 28 B 484 LEU GLY GLU GLU ALA ALA PHE SER LEU MET GLY ARG HIS SEQRES 29 B 484 VAL ALA ARG ALA GLU GLU THR TYR TYR MET LEU GLY ALA SEQRES 30 B 484 ILE GLU GLY TRP LEU LYS GLU ILE LYS ALA GLY GLU ASP SEQRES 31 B 484 THR VAL VAL MET PRO ALA VAL PRO ALA SER ALA GLU GLY SEQRES 32 B 484 THR GLY PHE THR GLU ALA PRO ARG GLY SER LEU LEU HIS SEQRES 33 B 484 TYR VAL LYS VAL LYS ASP SER LYS ILE ASP ASN TYR GLN SEQRES 34 B 484 ILE VAL SER ALA SER LEU TRP ASN CYS ASN PRO ARG ASP SEQRES 35 B 484 ASP MET GLY GLN ARG GLY ALA VAL GLU GLU ALA LEU ILE SEQRES 36 B 484 GLY ILE PRO VAL ASP ASP ILE GLN ASN PRO VAL ASN VAL SEQRES 37 B 484 ALA ARG LEU ILE ARG ALA PHE ASP PRO PSW LEU GLY CYS SEQRES 38 B 484 ALA VAL HIS MODRES 3ZE8 OCS B 75 CYS CYSTEINESULFONIC ACID MODRES 3ZE8 PSW B 489 SEC 3-(SULFANYLSELANYL)-L-ALANINE HET OCS B 75 8 HET PSW B 489 7 HET SF4 A 284 8 HET SF4 A 285 8 HET SF4 A 286 8 HET C15 A1284 11 HET C15 A1285 10 HET C15 A1286 9 HET FCO B 500 7 HET NI B 501 1 HET FE2 B 502 1 HET CL B 504 1 HET C15 B1496 7 HET C15 B1497 12 HETNAM OCS CYSTEINESULFONIC ACID HETNAM PSW 3-(SULFANYLSELANYL)-L-ALANINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM C15 N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE HETNAM FCO CARBONMONOXIDE-(DICYANO) IRON HETNAM NI NICKEL (II) ION HETNAM FE2 FE (II) ION HETNAM CL CHLORIDE ION FORMUL 2 OCS C3 H7 N O5 S FORMUL 2 PSW C3 H7 N O2 S SE FORMUL 3 SF4 3(FE4 S4) FORMUL 6 C15 5(C17 H38 N O3 S 1+) FORMUL 9 FCO C3 FE N2 O FORMUL 10 NI NI 2+ FORMUL 11 FE2 FE 2+ FORMUL 12 CL CL 1- FORMUL 15 HOH *639(H2 O) HELIX 1 AA1 THR A 19 ASN A 27 1 9 HELIX 2 AA2 SER A 32 LYS A 39 1 8 HELIX 3 AA3 GLU A 53 PHE A 68 1 16 HELIX 4 AA4 GLU A 83 LYS A 87 5 5 HELIX 5 AA5 MET A 101 GLY A 109 1 9 HELIX 6 AA6 PRO A 110 ALA A 112 5 3 HELIX 7 AA7 GLY A 119 GLY A 125 1 7 HELIX 8 AA8 GLY A 126 ALA A 130 5 5 HELIX 9 AA9 ALA A 139 ASN A 147 1 9 HELIX 10 AB1 HIS A 162 VAL A 192 1 31 HELIX 11 AB2 PRO A 199 GLY A 204 1 6 HELIX 12 AB3 ILE A 207 CYS A 211 5 5 HELIX 13 AB4 TYR A 213 GLY A 220 1 8 HELIX 14 AB5 ARG A 233 GLY A 237 5 5 HELIX 15 AB6 LYS A 239 THR A 243 5 5 HELIX 16 AB7 ASP A 246 LYS A 251 1 6 HELIX 17 AB8 TRP A 258 ALA A 263 1 6 HELIX 18 AB9 PRO A 274 SER A 278 5 5 HELIX 19 AC1 GLY B 54 LEU B 59 1 6 HELIX 20 AC2 ASP B 63 ARG B 65 5 3 HELIX 21 AC3 ASP B 66 VAL B 71 1 6 HELIX 22 AC4 GLN B 72 OCS B 75 5 4 HELIX 23 AC5 CYS B 78 GLY B 95 1 18 HELIX 24 AC6 PRO B 99 LEU B 125 1 27 HELIX 25 AC7 SER B 126 PHE B 130 5 5 HELIX 26 AC8 SER B 151 GLY B 181 1 31 HELIX 27 AC9 THR B 199 LYS B 220 1 22 HELIX 28 AD1 LYS B 220 SER B 230 1 11 HELIX 29 AD2 LYS B 231 LYS B 237 5 7 HELIX 30 AD3 ASP B 276 SER B 278 5 3 HELIX 31 AD4 ALA B 290 THR B 294 5 5 HELIX 32 AD5 ASN B 297 GLY B 301 5 5 HELIX 33 AD6 GLY B 329 ASN B 338 1 10 HELIX 34 AD7 SER B 342 GLY B 354 1 13 HELIX 35 AD8 LYS B 359 LEU B 363 5 5 HELIX 36 AD9 GLY B 364 PHE B 369 1 6 HELIX 37 AE1 SER B 370 ILE B 396 1 27 HELIX 38 AE2 SER B 443 CYS B 449 1 7 HELIX 39 AE3 GLY B 459 LEU B 465 1 7 HELIX 40 AE4 VAL B 477 PHE B 486 1 10 HELIX 41 AE5 PSW B 489 HIS B 495 1 7 SHEET 1 AA1 5 SER A 42 PHE A 45 0 SHEET 2 AA1 5 PRO A 9 GLN A 14 1 N VAL A 10 O SER A 42 SHEET 3 AA1 5 PHE A 73 GLU A 77 1 O VAL A 75 N LEU A 13 SHEET 4 AA1 5 ALA A 114 VAL A 118 1 O LEU A 116 N LEU A 74 SHEET 5 AA1 5 VAL A 153 ILE A 156 1 O ILE A 156 N ALA A 117 SHEET 1 AA2 2 VAL A 80 PRO A 81 0 SHEET 2 AA2 2 ALA A 137 THR A 138 -1 O THR A 138 N VAL A 80 SHEET 1 AA3 2 ILE A 90 ALA A 94 0 SHEET 2 AA3 2 HIS A 97 SER A 100 -1 O ILE A 99 N GLY A 92 SHEET 1 AA4 3 THR B 17 ILE B 21 0 SHEET 2 AA4 3 LEU B 31 GLU B 38 -1 O VAL B 37 N THR B 17 SHEET 3 AA4 3 LYS B 41 GLY B 49 -1 O VAL B 43 N VAL B 36 SHEET 1 AA5 2 GLN B 189 VAL B 190 0 SHEET 2 AA5 2 GLY B 193 ALA B 194 -1 O GLY B 193 N VAL B 190 SHEET 1 AA6 3 ALA B 245 CYS B 247 0 SHEET 2 AA6 3 GLY B 265 ALA B 268 -1 O TYR B 267 N ALA B 245 SHEET 3 AA6 3 LYS B 271 MET B 273 -1 O MET B 273 N VAL B 266 SHEET 1 AA7 2 ALA B 250 PRO B 252 0 SHEET 2 AA7 2 HIS B 260 PHE B 262 -1 O LEU B 261 N PHE B 251 SHEET 1 AA8 2 ILE B 280 TYR B 283 0 SHEET 2 AA8 2 ALA B 318 TYR B 321 -1 O ALA B 318 N TYR B 283 SHEET 1 AA9 3 ALA B 412 ALA B 420 0 SHEET 2 AA9 3 GLY B 423 LYS B 432 -1 O VAL B 431 N ALA B 412 SHEET 3 AA9 3 LYS B 435 VAL B 442 -1 O ASP B 437 N LYS B 430 SSBOND 1 CYS B 78 CYS B 492 1555 1555 2.93 LINK C ILE B 74 N OCS B 75 1555 1555 1.33 LINK C OCS B 75 N GLY B 76 1555 1555 1.33 LINK C PRO B 488 N APSW B 489 1555 1555 1.33 LINK C APSW B 489 N LEU B 490 1555 1555 1.33 LINK SG CYS A 18 FE1 SF4 A 286 1555 1555 2.24 LINK SG CYS A 21 FE4 SF4 A 286 1555 1555 2.31 LINK SG CYS A 121 FE2 SF4 A 286 1555 1555 2.33 LINK SG CYS A 159 FE3 SF4 A 286 1555 1555 2.35 LINK ND1 HIS A 208 FE2 SF4 A 284 1555 1555 2.05 LINK SG CYS A 211 FE4 SF4 A 284 1555 1555 2.25 LINK SG CYS A 232 FE3 SF4 A 284 1555 1555 2.29 LINK SG CYS A 238 FE1 SF4 A 284 1555 1555 2.36 LINK SG CYS A 247 FE4 SF4 A 285 1555 1555 2.31 LINK SG CYS A 259 FE3 SF4 A 285 1555 1555 2.27 LINK SG CYS A 265 FE2 SF4 A 285 1555 1555 2.29 LINK SG CYS A 268 FE1 SF4 A 285 1555 1555 2.31 LINK OE2 GLU B 56 FE FE2 B 502 1555 1555 2.18 LINK SG OCS B 75 NI NI B 501 1555 1555 2.19 LINK SG CYS B 78 FE FCO B 500 1555 1555 2.23 LINK SG CYS B 78 NI NI B 501 1555 1555 2.45 LINK O ILE B 441 FE FE2 B 502 1555 1555 2.27 LINK SD APSW B 489 NI NI B 501 1555 1555 2.14 LINK SG CYS B 492 FE FCO B 500 1555 1555 2.28 LINK SG CYS B 492 NI NI B 501 1555 1555 2.48 LINK NE2 HIS B 495 FE FE2 B 502 1555 1555 2.19 LINK FE FE2 B 502 O HOH B2046 1555 1555 2.18 LINK FE FE2 B 502 O HOH B2047 1555 1555 2.19 LINK FE FE2 B 502 O HOH B2253 1555 1555 2.12 CISPEP 1 CYS A 159 PRO A 160 0 -1.68 CISPEP 2 PHE A 273 PRO A 274 0 6.65 CISPEP 3 SER A 278 PRO A 279 0 -2.66 CISPEP 4 ASP B 22 PRO B 23 0 3.57 CISPEP 5 ALA B 137 PRO B 138 0 3.86 CISPEP 6 VAL B 140 PRO B 141 0 -2.22 CISPEP 7 MET B 183 PRO B 184 0 -0.57 SITE 1 AC1 8 HIS A 208 CYS A 211 TYR A 213 LEU A 214 SITE 2 AC1 8 CYS A 232 ARG A 233 CYS A 238 VAL A 260 SITE 1 AC2 9 THR A 243 CYS A 247 TRP A 252 CYS A 259 SITE 2 AC2 9 CYS A 265 ILE A 266 CYS A 268 ARG B 182 SITE 3 AC2 9 GLN B 187 SITE 1 AC3 10 CYS A 18 CYS A 21 GLY A 119 THR A 120 SITE 2 AC3 10 CYS A 121 GLY A 158 CYS A 159 PRO A 160 SITE 3 AC3 10 ARG B 73 HIS B 185 SITE 1 AC4 4 SER A 22 LEU A 26 LEU A 37 HIS A 46 SITE 1 AC5 1 C15 B1496 SITE 1 AC6 3 VAL A 10 PHE A 73 LEU A 174 SITE 1 AC7 12 CYS B 78 HIS B 82 ALA B 420 PRO B 421 SITE 2 AC7 12 ARG B 422 LEU B 425 ALA B 444 SER B 445 SITE 3 AC7 12 SEC B 489 PSW B 489 CYS B 492 NI B 501 SITE 1 AC8 6 OCS B 75 CYS B 78 PSW B 489 SEC B 489 SITE 2 AC8 6 CYS B 492 FCO B 500 SITE 1 AC9 6 GLU B 56 ILE B 441 HIS B 495 HOH B2046 SITE 2 AC9 6 HOH B2047 HOH B2253 SITE 1 AD1 6 CYS B 78 THR B 80 ALA B 81 PHE B 110 SITE 2 AD1 6 ASN B 113 PRO B 421 SITE 1 AD2 5 C15 A1285 GLN B 128 VAL B 131 PRO B 134 SITE 2 AD2 5 TYR B 162 SITE 1 AD3 6 HOH A2119 PHE B 236 LYS B 237 LEU B 349 SITE 2 AD3 6 PHE B 353 ILE B 355 CRYST1 72.227 97.632 103.348 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009676 0.00000