HEADER DNA BINDING 05-DEC-12 3ZEH TITLE SOLUTION STRUCTURE OF THE HS. PSIP1 PWWP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC4 AND SFRS1-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PWWP DOMAIN, RESIDUES 3-100; COMPND 5 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-7, DENSE FINE SPECKLES 70 KDA COMPND 6 PROTEIN, DFS 70, LENS EPITHELIUM-DERIVED GROWTH FACTOR, COMPND 7 TRANSCRIPTIONAL COACTIVATOR P75/P52, PSIP1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS DNA BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.VAN INGEN,R.VAN NULAND,H.T.M.TIMMERS,R.BOELENS REVDAT 2 14-JUN-23 3ZEH 1 REMARK ATOM REVDAT 1 22-MAY-13 3ZEH 0 JRNL AUTH R.VAN NULAND,F.M.VAN SCHAIK,M.SIMONIS,S.VAN HEESCH,E.CUPPEN, JRNL AUTH 2 R.BOELENS,H.T.M.TIMMERS,H.VAN INGEN JRNL TITL NUCLEOSOMAL DNA BINDING DRIVES THE RECOGNITION OF JRNL TITL 2 H3K36-METHYLATED NUCLEOSOMES BY THE PSIP1-PWWP DOMAIN. JRNL REF EPIGENETICS CHROMATIN V. 6 12 2013 JRNL REFN ESSN 1756-8935 JRNL PMID 23656834 JRNL DOI 10.1186/1756-8935-6-12 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN EXPLICIT WATER USING REMARK 3 RECOORD PROTOCOL REMARK 4 REMARK 4 3ZEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055005. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER 10% D2O 20 MM NAPI PH REMARK 210 6 100 MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE RESONANCE; 13C/15N EDITED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA, CNS REMARK 210 METHOD USED : CYANA AND WATER-REFINEMENT IN REMARK 210 CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 94 REMARK 465 GLN A 95 REMARK 465 GLN A 96 REMARK 465 ALA A 97 REMARK 465 ALA A 98 REMARK 465 THR A 99 REMARK 465 LYS A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 65 OD1 ASP A 85 1.54 REMARK 500 OE2 GLU A 27 HZ3 LYS A 91 1.54 REMARK 500 HH21 ARG A 24 OD1 ASP A 26 1.58 REMARK 500 HH22 ARG A 24 OE1 GLU A 27 1.58 REMARK 500 HZ1 LYS A 39 OD2 ASP A 57 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ALA A 32 38.94 -93.84 REMARK 500 2 THR A 37 8.79 -60.20 REMARK 500 2 LYS A 91 -70.13 -128.25 REMARK 500 3 ASN A 64 9.87 -67.96 REMARK 500 3 ASN A 72 -157.32 -102.35 REMARK 500 3 LYS A 91 -49.78 -144.66 REMARK 500 4 ASN A 38 7.69 85.85 REMARK 500 4 PHE A 92 -71.40 -34.99 REMARK 500 5 THR A 37 10.23 -64.62 REMARK 500 5 ASN A 38 10.96 81.32 REMARK 500 5 ASN A 72 -165.48 -112.22 REMARK 500 8 LYS A 91 -53.73 173.13 REMARK 500 8 PHE A 92 -63.23 -120.18 REMARK 500 9 PRO A 71 158.13 -49.42 REMARK 500 10 ASN A 38 9.16 87.44 REMARK 500 10 ASN A 86 -51.12 -123.57 REMARK 500 10 PHE A 92 104.03 -29.56 REMARK 500 11 ARG A 3 -152.14 -122.09 REMARK 500 11 ASN A 38 9.43 87.11 REMARK 500 11 VAL A 90 78.42 -66.61 REMARK 500 12 PRO A 71 153.11 -49.15 REMARK 500 13 ALA A 32 94.66 -67.36 REMARK 500 14 ASN A 38 8.12 84.27 REMARK 500 14 VAL A 90 108.17 -53.56 REMARK 500 14 LYS A 91 -66.87 74.65 REMARK 500 14 PHE A 92 177.65 61.68 REMARK 500 15 ARG A 3 -164.92 168.71 REMARK 500 15 ASP A 4 105.04 58.55 REMARK 500 15 ASN A 38 8.98 86.33 REMARK 500 15 ASN A 86 -56.29 -125.32 REMARK 500 16 ASP A 4 -105.35 58.73 REMARK 500 16 ALA A 32 43.82 -95.22 REMARK 500 16 VAL A 33 15.68 -64.80 REMARK 500 16 ASN A 86 -57.55 -120.81 REMARK 500 16 VAL A 90 81.32 -61.51 REMARK 500 16 LYS A 91 -38.75 -155.87 REMARK 500 17 ALA A 32 41.39 -75.00 REMARK 500 17 VAL A 33 -41.82 44.19 REMARK 500 17 ASN A 38 8.03 82.88 REMARK 500 17 ASN A 72 -166.96 -102.73 REMARK 500 17 PHE A 92 -167.55 -75.04 REMARK 500 18 ASN A 38 9.94 80.91 REMARK 500 20 PHE A 92 158.49 -45.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 3 0.09 SIDE CHAIN REMARK 500 13 ARG A 3 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18878 RELATED DB: BMRB DBREF 3ZEH A 3 100 UNP O75475 PSIP1_HUMAN 3 100 SEQADV 3ZEH GLY A -4 UNP O75475 EXPRESSION TAG SEQADV 3ZEH SER A -3 UNP O75475 EXPRESSION TAG SEQADV 3ZEH HIS A -2 UNP O75475 EXPRESSION TAG SEQADV 3ZEH MET A -1 UNP O75475 EXPRESSION TAG SEQADV 3ZEH ALA A 0 UNP O75475 EXPRESSION TAG SEQADV 3ZEH MET A 1 UNP O75475 EXPRESSION TAG SEQADV 3ZEH ALA A 2 UNP O75475 EXPRESSION TAG SEQRES 1 A 105 GLY SER HIS MET ALA MET ALA ARG ASP PHE LYS PRO GLY SEQRES 2 A 105 ASP LEU ILE PHE ALA LYS MET LYS GLY TYR PRO HIS TRP SEQRES 3 A 105 PRO ALA ARG VAL ASP GLU VAL PRO ASP GLY ALA VAL LYS SEQRES 4 A 105 PRO PRO THR ASN LYS LEU PRO ILE PHE PHE PHE GLY THR SEQRES 5 A 105 HIS GLU THR ALA PHE LEU GLY PRO LYS ASP ILE PHE PRO SEQRES 6 A 105 TYR SER GLU ASN LYS GLU LYS TYR GLY LYS PRO ASN LYS SEQRES 7 A 105 ARG LYS GLY PHE ASN GLU GLY LEU TRP GLU ILE ASP ASN SEQRES 8 A 105 ASN PRO LYS VAL LYS PHE SER SER GLN GLN ALA ALA THR SEQRES 9 A 105 LYS HELIX 1 1 GLY A 76 ASN A 87 1 12 SHEET 1 AA 5 THR A 50 LEU A 53 0 SHEET 2 AA 5 LEU A 40 PHE A 44 -1 O LEU A 40 N LEU A 53 SHEET 3 AA 5 TRP A 21 VAL A 25 -1 O ARG A 24 N PHE A 43 SHEET 4 AA 5 LEU A 10 ALA A 13 -1 O ILE A 11 N ALA A 23 SHEET 5 AA 5 ILE A 58 PRO A 60 -1 O PHE A 59 N PHE A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1