data_3ZFI # _entry.id 3ZFI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZFI PDBE EBI-55082 WWPDB D_1290055082 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3ZIB _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'RAP2A PROTEIN (SMA2265) FROM SERRATIA MARCESCENS' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZFI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-12-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Srikannathasan, V.' 1 ;O'Rourke, P.E.F. ; 2 'Rao, V.A.' 3 'English, G.' 4 'Coulthurst, S.J.' 5 'Hunter, W.N.' 6 # _citation.id primary _citation.title ;Structural Basis for Type Vi Secreted Peptidoglycan Dl-Endopeptidase Function, Specificity and Neutralization in Serratia Marcescens ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 69 _citation.page_first 2468 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24311588 _citation.pdbx_database_id_DOI 10.1107/S0907444913022725 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Srikannathasan, V.' 1 ? primary 'English, G.' 2 ? primary 'Bui, N.K.' 3 ? primary 'Trunk, K.' 4 ? primary 'Rourke, P.E.F.O.' 5 ? primary 'Rao, V.A.' 6 ? primary 'Vollmer, W.' 7 ? primary 'Coulthurst, S.J.' 8 ? primary 'Hunter, W.N.' 9 ? # _cell.entry_id 3ZFI _cell.length_a 82.650 _cell.length_b 93.000 _cell.length_c 51.260 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZFI _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RAP1A PROTEIN' 11827.369 2 ? ? 'MATURE PROTEIN (SIGNAL PEPTIDE CLEAVED)' ? 2 water nat water 18.015 57 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMEQTSIAHLTSDDVNLPGSDFFRFYRSADKQEKEKARIYLLGVLDATEGKSWCQYSQLQTVTLQEFVFEFFNKLPAAR LHERAAPLIEEALATRFPCKGGKA ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMEQTSIAHLTSDDVNLPGSDFFRFYRSADKQEKEKARIYLLGVLDATEGKSWCQYSQLQTVTLQEFVFEFFNKLPAAR LHERAAPLIEEALATRFPCKGGKA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 GLU n 1 5 GLN n 1 6 THR n 1 7 SER n 1 8 ILE n 1 9 ALA n 1 10 HIS n 1 11 LEU n 1 12 THR n 1 13 SER n 1 14 ASP n 1 15 ASP n 1 16 VAL n 1 17 ASN n 1 18 LEU n 1 19 PRO n 1 20 GLY n 1 21 SER n 1 22 ASP n 1 23 PHE n 1 24 PHE n 1 25 ARG n 1 26 PHE n 1 27 TYR n 1 28 ARG n 1 29 SER n 1 30 ALA n 1 31 ASP n 1 32 LYS n 1 33 GLN n 1 34 GLU n 1 35 LYS n 1 36 GLU n 1 37 LYS n 1 38 ALA n 1 39 ARG n 1 40 ILE n 1 41 TYR n 1 42 LEU n 1 43 LEU n 1 44 GLY n 1 45 VAL n 1 46 LEU n 1 47 ASP n 1 48 ALA n 1 49 THR n 1 50 GLU n 1 51 GLY n 1 52 LYS n 1 53 SER n 1 54 TRP n 1 55 CYS n 1 56 GLN n 1 57 TYR n 1 58 SER n 1 59 GLN n 1 60 LEU n 1 61 GLN n 1 62 THR n 1 63 VAL n 1 64 THR n 1 65 LEU n 1 66 GLN n 1 67 GLU n 1 68 PHE n 1 69 VAL n 1 70 PHE n 1 71 GLU n 1 72 PHE n 1 73 PHE n 1 74 ASN n 1 75 LYS n 1 76 LEU n 1 77 PRO n 1 78 ALA n 1 79 ALA n 1 80 ARG n 1 81 LEU n 1 82 HIS n 1 83 GLU n 1 84 ARG n 1 85 ALA n 1 86 ALA n 1 87 PRO n 1 88 LEU n 1 89 ILE n 1 90 GLU n 1 91 GLU n 1 92 ALA n 1 93 LEU n 1 94 ALA n 1 95 THR n 1 96 ARG n 1 97 PHE n 1 98 PRO n 1 99 CYS n 1 100 LYS n 1 101 GLY n 1 102 GLY n 1 103 LYS n 1 104 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DB10 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SERRATIA MARCESCENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 615 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3ZFI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 3ZFI _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ZFI A 1 ? 104 ? 3ZFI 24 ? 127 ? 24 127 2 1 3ZFI B 1 ? 104 ? 3ZFI 24 ? 127 ? 24 127 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZFI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.53 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;SITTING DROP VAPOUR DIFFUSION. PROTEIN CONCENTRATION AT 9MG/ML, IN 150 MM SODIUM CHLORIDE, 25MM TRIS-HCL, PH 7.5 (SAMPLE BUFFER) RESERVOIR: 25% W/V POLYETHYLENE GLYCOL 3350, 0.1M BIS-TRIS, PH 5.5 2:1 SAMPLE TO RESERVOIR RATIO. ; # _diffrn.id 1 _diffrn.ambient_temp 287 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-08-01 _diffrn_detector.details 'COMPOUND REFRACTIVE LENSES' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength 0.97950 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZFI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.50 _reflns.d_resolution_high 1.98 _reflns.number_obs 14089 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.98 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 4.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZFI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13371 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 61.78 _refine.ls_d_res_high 1.98 _refine.ls_percent_reflns_obs 99.81 _refine.ls_R_factor_obs 0.19416 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19216 _refine.ls_R_factor_R_free 0.23396 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 706 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 37.714 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.53 _refine.aniso_B[3][3] -0.65 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.183 _refine.pdbx_overall_ESU_R_Free 0.162 _refine.overall_SU_ML 0.119 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.280 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1508 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 1565 _refine_hist.d_res_high 1.98 _refine_hist.d_res_low 61.78 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.020 ? 1555 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.925 1.955 ? 2102 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.574 5.000 ? 185 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.976 23.333 ? 81 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.009 15.000 ? 267 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.665 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.120 0.200 ? 225 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1197 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.981 _refine_ls_shell.d_res_low 2.032 _refine_ls_shell.number_reflns_R_work 893 _refine_ls_shell.R_factor_R_work 0.250 _refine_ls_shell.percent_reflns_obs 99.89 _refine_ls_shell.R_factor_R_free 0.254 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3ZFI _struct.title 'Rap1a protein (SMA2260) from Serratia marcescens' _struct.pdbx_descriptor 'RAP1A PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZFI _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'TRANSPORT PROTEIN, BACTERIAL IMMUNITY, 2260 PROTEIN, T6SS, TYPE VI SECRETION SYSTEM, SELF-RESISTANCE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 19 ? ARG A 28 ? PRO A 42 ARG A 51 1 ? 10 HELX_P HELX_P2 2 ASP A 31 ? GLU A 50 ? ASP A 54 GLU A 73 1 ? 20 HELX_P HELX_P3 3 GLN A 61 ? LYS A 75 ? GLN A 84 LYS A 98 1 ? 15 HELX_P HELX_P4 4 PRO A 77 ? LEU A 81 ? PRO A 100 LEU A 104 5 ? 5 HELX_P HELX_P5 5 ARG A 84 ? PHE A 97 ? ARG A 107 PHE A 120 1 ? 14 HELX_P HELX_P6 6 PRO B 19 ? ARG B 28 ? PRO B 42 ARG B 51 1 ? 10 HELX_P HELX_P7 7 ASP B 31 ? GLU B 50 ? ASP B 54 GLU B 73 1 ? 20 HELX_P HELX_P8 8 GLN B 61 ? LYS B 75 ? GLN B 84 LYS B 98 1 ? 15 HELX_P HELX_P9 9 PRO B 77 ? HIS B 82 ? PRO B 100 HIS B 105 1 ? 6 HELX_P HELX_P10 10 ARG B 84 ? PHE B 97 ? ARG B 107 PHE B 120 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 78 A CYS 122 1_555 ? ? ? ? ? ? ? 2.035 ? disulf2 disulf ? ? B CYS 55 SG ? ? ? 1_555 B CYS 99 SG ? ? B CYS 78 B CYS 122 1_555 ? ? ? ? ? ? ? 2.034 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 55 A . ? CYS 78 A GLN 56 A ? GLN 79 A 1 8.84 2 CYS 55 B . ? CYS 78 B GLN 56 B ? GLN 79 B 1 0.56 # _database_PDB_matrix.entry_id 3ZFI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZFI _atom_sites.fract_transf_matrix[1][1] 0.012099 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019508 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 24 ? ? ? A . n A 1 2 HIS 2 25 ? ? ? A . n A 1 3 MET 3 26 ? ? ? A . n A 1 4 GLU 4 27 ? ? ? A . n A 1 5 GLN 5 28 ? ? ? A . n A 1 6 THR 6 29 ? ? ? A . n A 1 7 SER 7 30 ? ? ? A . n A 1 8 ILE 8 31 31 ILE ILE A . n A 1 9 ALA 9 32 32 ALA ALA A . n A 1 10 HIS 10 33 33 HIS HIS A . n A 1 11 LEU 11 34 34 LEU LEU A . n A 1 12 THR 12 35 35 THR THR A . n A 1 13 SER 13 36 36 SER SER A . n A 1 14 ASP 14 37 37 ASP ASP A . n A 1 15 ASP 15 38 38 ASP ASP A . n A 1 16 VAL 16 39 39 VAL VAL A . n A 1 17 ASN 17 40 40 ASN ASN A . n A 1 18 LEU 18 41 41 LEU LEU A . n A 1 19 PRO 19 42 42 PRO PRO A . n A 1 20 GLY 20 43 43 GLY GLY A . n A 1 21 SER 21 44 44 SER SER A . n A 1 22 ASP 22 45 45 ASP ASP A . n A 1 23 PHE 23 46 46 PHE PHE A . n A 1 24 PHE 24 47 47 PHE PHE A . n A 1 25 ARG 25 48 48 ARG ARG A . n A 1 26 PHE 26 49 49 PHE PHE A . n A 1 27 TYR 27 50 50 TYR TYR A . n A 1 28 ARG 28 51 51 ARG ARG A . n A 1 29 SER 29 52 52 SER SER A . n A 1 30 ALA 30 53 53 ALA ALA A . n A 1 31 ASP 31 54 54 ASP ASP A . n A 1 32 LYS 32 55 55 LYS LYS A . n A 1 33 GLN 33 56 56 GLN GLN A . n A 1 34 GLU 34 57 57 GLU GLU A . n A 1 35 LYS 35 58 58 LYS LYS A . n A 1 36 GLU 36 59 59 GLU GLU A . n A 1 37 LYS 37 60 60 LYS LYS A . n A 1 38 ALA 38 61 61 ALA ALA A . n A 1 39 ARG 39 62 62 ARG ARG A . n A 1 40 ILE 40 63 63 ILE ILE A . n A 1 41 TYR 41 64 64 TYR TYR A . n A 1 42 LEU 42 65 65 LEU LEU A . n A 1 43 LEU 43 66 66 LEU LEU A . n A 1 44 GLY 44 67 67 GLY GLY A . n A 1 45 VAL 45 68 68 VAL VAL A . n A 1 46 LEU 46 69 69 LEU LEU A . n A 1 47 ASP 47 70 70 ASP ASP A . n A 1 48 ALA 48 71 71 ALA ALA A . n A 1 49 THR 49 72 72 THR THR A . n A 1 50 GLU 50 73 73 GLU GLU A . n A 1 51 GLY 51 74 74 GLY GLY A . n A 1 52 LYS 52 75 75 LYS LYS A . n A 1 53 SER 53 76 76 SER SER A . n A 1 54 TRP 54 77 77 TRP TRP A . n A 1 55 CYS 55 78 78 CYS CYS A . n A 1 56 GLN 56 79 79 GLN GLN A . n A 1 57 TYR 57 80 80 TYR TYR A . n A 1 58 SER 58 81 81 SER SER A . n A 1 59 GLN 59 82 82 GLN GLN A . n A 1 60 LEU 60 83 83 LEU LEU A . n A 1 61 GLN 61 84 84 GLN GLN A . n A 1 62 THR 62 85 85 THR THR A . n A 1 63 VAL 63 86 86 VAL VAL A . n A 1 64 THR 64 87 87 THR THR A . n A 1 65 LEU 65 88 88 LEU LEU A . n A 1 66 GLN 66 89 89 GLN GLN A . n A 1 67 GLU 67 90 90 GLU GLU A . n A 1 68 PHE 68 91 91 PHE PHE A . n A 1 69 VAL 69 92 92 VAL VAL A . n A 1 70 PHE 70 93 93 PHE PHE A . n A 1 71 GLU 71 94 94 GLU GLU A . n A 1 72 PHE 72 95 95 PHE PHE A . n A 1 73 PHE 73 96 96 PHE PHE A . n A 1 74 ASN 74 97 97 ASN ASN A . n A 1 75 LYS 75 98 98 LYS LYS A . n A 1 76 LEU 76 99 99 LEU LEU A . n A 1 77 PRO 77 100 100 PRO PRO A . n A 1 78 ALA 78 101 101 ALA ALA A . n A 1 79 ALA 79 102 102 ALA ALA A . n A 1 80 ARG 80 103 103 ARG ARG A . n A 1 81 LEU 81 104 104 LEU LEU A . n A 1 82 HIS 82 105 105 HIS HIS A . n A 1 83 GLU 83 106 106 GLU GLU A . n A 1 84 ARG 84 107 107 ARG ARG A . n A 1 85 ALA 85 108 108 ALA ALA A . n A 1 86 ALA 86 109 109 ALA ALA A . n A 1 87 PRO 87 110 110 PRO PRO A . n A 1 88 LEU 88 111 111 LEU LEU A . n A 1 89 ILE 89 112 112 ILE ILE A . n A 1 90 GLU 90 113 113 GLU GLU A . n A 1 91 GLU 91 114 114 GLU GLU A . n A 1 92 ALA 92 115 115 ALA ALA A . n A 1 93 LEU 93 116 116 LEU LEU A . n A 1 94 ALA 94 117 117 ALA ALA A . n A 1 95 THR 95 118 118 THR THR A . n A 1 96 ARG 96 119 119 ARG ARG A . n A 1 97 PHE 97 120 120 PHE PHE A . n A 1 98 PRO 98 121 121 PRO PRO A . n A 1 99 CYS 99 122 122 CYS CYS A . n A 1 100 LYS 100 123 123 LYS LYS A . n A 1 101 GLY 101 124 ? ? ? A . n A 1 102 GLY 102 125 ? ? ? A . n A 1 103 LYS 103 126 ? ? ? A . n A 1 104 ALA 104 127 ? ? ? A . n B 1 1 GLY 1 24 ? ? ? B . n B 1 2 HIS 2 25 ? ? ? B . n B 1 3 MET 3 26 ? ? ? B . n B 1 4 GLU 4 27 ? ? ? B . n B 1 5 GLN 5 28 ? ? ? B . n B 1 6 THR 6 29 ? ? ? B . n B 1 7 SER 7 30 ? ? ? B . n B 1 8 ILE 8 31 ? ? ? B . n B 1 9 ALA 9 32 32 ALA ALA B . n B 1 10 HIS 10 33 33 HIS HIS B . n B 1 11 LEU 11 34 34 LEU LEU B . n B 1 12 THR 12 35 35 THR THR B . n B 1 13 SER 13 36 36 SER SER B . n B 1 14 ASP 14 37 37 ASP ASP B . n B 1 15 ASP 15 38 38 ASP ASP B . n B 1 16 VAL 16 39 39 VAL VAL B . n B 1 17 ASN 17 40 40 ASN ASN B . n B 1 18 LEU 18 41 41 LEU LEU B . n B 1 19 PRO 19 42 42 PRO PRO B . n B 1 20 GLY 20 43 43 GLY GLY B . n B 1 21 SER 21 44 44 SER SER B . n B 1 22 ASP 22 45 45 ASP ASP B . n B 1 23 PHE 23 46 46 PHE PHE B . n B 1 24 PHE 24 47 47 PHE PHE B . n B 1 25 ARG 25 48 48 ARG ARG B . n B 1 26 PHE 26 49 49 PHE PHE B . n B 1 27 TYR 27 50 50 TYR TYR B . n B 1 28 ARG 28 51 51 ARG ARG B . n B 1 29 SER 29 52 52 SER SER B . n B 1 30 ALA 30 53 53 ALA ALA B . n B 1 31 ASP 31 54 54 ASP ASP B . n B 1 32 LYS 32 55 55 LYS LYS B . n B 1 33 GLN 33 56 56 GLN GLN B . n B 1 34 GLU 34 57 57 GLU GLU B . n B 1 35 LYS 35 58 58 LYS LYS B . n B 1 36 GLU 36 59 59 GLU GLU B . n B 1 37 LYS 37 60 60 LYS LYS B . n B 1 38 ALA 38 61 61 ALA ALA B . n B 1 39 ARG 39 62 62 ARG ARG B . n B 1 40 ILE 40 63 63 ILE ILE B . n B 1 41 TYR 41 64 64 TYR TYR B . n B 1 42 LEU 42 65 65 LEU LEU B . n B 1 43 LEU 43 66 66 LEU LEU B . n B 1 44 GLY 44 67 67 GLY GLY B . n B 1 45 VAL 45 68 68 VAL VAL B . n B 1 46 LEU 46 69 69 LEU LEU B . n B 1 47 ASP 47 70 70 ASP ASP B . n B 1 48 ALA 48 71 71 ALA ALA B . n B 1 49 THR 49 72 72 THR THR B . n B 1 50 GLU 50 73 73 GLU GLU B . n B 1 51 GLY 51 74 74 GLY GLY B . n B 1 52 LYS 52 75 75 LYS LYS B . n B 1 53 SER 53 76 76 SER SER B . n B 1 54 TRP 54 77 77 TRP TRP B . n B 1 55 CYS 55 78 78 CYS CYS B . n B 1 56 GLN 56 79 79 GLN GLN B . n B 1 57 TYR 57 80 80 TYR TYR B . n B 1 58 SER 58 81 81 SER SER B . n B 1 59 GLN 59 82 82 GLN GLN B . n B 1 60 LEU 60 83 83 LEU LEU B . n B 1 61 GLN 61 84 84 GLN GLN B . n B 1 62 THR 62 85 85 THR THR B . n B 1 63 VAL 63 86 86 VAL VAL B . n B 1 64 THR 64 87 87 THR THR B . n B 1 65 LEU 65 88 88 LEU LEU B . n B 1 66 GLN 66 89 89 GLN GLN B . n B 1 67 GLU 67 90 90 GLU GLU B . n B 1 68 PHE 68 91 91 PHE PHE B . n B 1 69 VAL 69 92 92 VAL VAL B . n B 1 70 PHE 70 93 93 PHE PHE B . n B 1 71 GLU 71 94 94 GLU GLU B . n B 1 72 PHE 72 95 95 PHE PHE B . n B 1 73 PHE 73 96 96 PHE PHE B . n B 1 74 ASN 74 97 97 ASN ASN B . n B 1 75 LYS 75 98 98 LYS LYS B . n B 1 76 LEU 76 99 99 LEU LEU B . n B 1 77 PRO 77 100 100 PRO PRO B . n B 1 78 ALA 78 101 101 ALA ALA B . n B 1 79 ALA 79 102 102 ALA ALA B . n B 1 80 ARG 80 103 103 ARG ARG B . n B 1 81 LEU 81 104 104 LEU LEU B . n B 1 82 HIS 82 105 105 HIS HIS B . n B 1 83 GLU 83 106 106 GLU GLU B . n B 1 84 ARG 84 107 107 ARG ARG B . n B 1 85 ALA 85 108 108 ALA ALA B . n B 1 86 ALA 86 109 109 ALA ALA B . n B 1 87 PRO 87 110 110 PRO PRO B . n B 1 88 LEU 88 111 111 LEU LEU B . n B 1 89 ILE 89 112 112 ILE ILE B . n B 1 90 GLU 90 113 113 GLU GLU B . n B 1 91 GLU 91 114 114 GLU GLU B . n B 1 92 ALA 92 115 115 ALA ALA B . n B 1 93 LEU 93 116 116 LEU LEU B . n B 1 94 ALA 94 117 117 ALA ALA B . n B 1 95 THR 95 118 118 THR THR B . n B 1 96 ARG 96 119 119 ARG ARG B . n B 1 97 PHE 97 120 120 PHE PHE B . n B 1 98 PRO 98 121 121 PRO PRO B . n B 1 99 CYS 99 122 122 CYS CYS B . n B 1 100 LYS 100 123 123 LYS LYS B . n B 1 101 GLY 101 124 ? ? ? B . n B 1 102 GLY 102 125 ? ? ? B . n B 1 103 LYS 103 126 ? ? ? B . n B 1 104 ALA 104 127 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2001 2001 HOH HOH A . C 2 HOH 2 2002 2002 HOH HOH A . C 2 HOH 3 2003 2003 HOH HOH A . C 2 HOH 4 2004 2004 HOH HOH A . C 2 HOH 5 2005 2005 HOH HOH A . C 2 HOH 6 2006 2006 HOH HOH A . C 2 HOH 7 2007 2007 HOH HOH A . C 2 HOH 8 2008 2008 HOH HOH A . C 2 HOH 9 2009 2009 HOH HOH A . C 2 HOH 10 2010 2010 HOH HOH A . C 2 HOH 11 2011 2011 HOH HOH A . C 2 HOH 12 2012 2012 HOH HOH A . C 2 HOH 13 2013 2013 HOH HOH A . C 2 HOH 14 2014 2014 HOH HOH A . C 2 HOH 15 2015 2015 HOH HOH A . C 2 HOH 16 2016 2016 HOH HOH A . C 2 HOH 17 2017 2017 HOH HOH A . C 2 HOH 18 2018 2018 HOH HOH A . C 2 HOH 19 2019 2019 HOH HOH A . C 2 HOH 20 2020 2020 HOH HOH A . C 2 HOH 21 2021 2021 HOH HOH A . C 2 HOH 22 2022 2022 HOH HOH A . C 2 HOH 23 2023 2023 HOH HOH A . C 2 HOH 24 2024 2024 HOH HOH A . C 2 HOH 25 2025 2025 HOH HOH A . C 2 HOH 26 2026 2026 HOH HOH A . C 2 HOH 27 2027 2027 HOH HOH A . C 2 HOH 28 2028 2028 HOH HOH A . C 2 HOH 29 2029 2029 HOH HOH A . C 2 HOH 30 2030 2030 HOH HOH A . C 2 HOH 31 2031 2031 HOH HOH A . C 2 HOH 32 2032 2032 HOH HOH A . C 2 HOH 33 2033 2033 HOH HOH A . C 2 HOH 34 2034 2034 HOH HOH A . C 2 HOH 35 2035 2035 HOH HOH A . C 2 HOH 36 2036 2036 HOH HOH A . C 2 HOH 37 2037 2037 HOH HOH A . C 2 HOH 38 2038 2038 HOH HOH A . D 2 HOH 1 2001 2001 HOH HOH B . D 2 HOH 2 2002 2002 HOH HOH B . D 2 HOH 3 2003 2003 HOH HOH B . D 2 HOH 4 2004 2004 HOH HOH B . D 2 HOH 5 2005 2005 HOH HOH B . D 2 HOH 6 2006 2006 HOH HOH B . D 2 HOH 7 2007 2007 HOH HOH B . D 2 HOH 8 2008 2008 HOH HOH B . D 2 HOH 9 2009 2009 HOH HOH B . D 2 HOH 10 2010 2010 HOH HOH B . D 2 HOH 11 2011 2011 HOH HOH B . D 2 HOH 12 2012 2012 HOH HOH B . D 2 HOH 13 2013 2013 HOH HOH B . D 2 HOH 14 2014 2014 HOH HOH B . D 2 HOH 15 2015 2015 HOH HOH B . D 2 HOH 16 2016 2016 HOH HOH B . D 2 HOH 17 2017 2017 HOH HOH B . D 2 HOH 18 2018 2018 HOH HOH B . D 2 HOH 19 2019 2019 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2260 ? 1 MORE -12.4 ? 1 'SSA (A^2)' 9140 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-19 2 'Structure model' 1 1 2013-12-11 3 'Structure model' 1 2 2013-12-18 4 'Structure model' 1 3 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 iMOSFLM 'data reduction' . ? 2 SCALA 'data scaling' CCP4 ? 3 PHASER phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 105 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 105 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.425 _pdbx_validate_rmsd_bond.bond_target_value 1.354 _pdbx_validate_rmsd_bond.bond_deviation 0.071 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 48 ? ? CZ A ARG 48 ? ? NH2 A ARG 48 ? ? 117.23 120.30 -3.07 0.50 N 2 1 NE B ARG 62 ? ? CZ B ARG 62 ? ? NH2 B ARG 62 ? ? 115.29 120.30 -5.01 0.50 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 24 ? A GLY 1 2 1 Y 1 A HIS 25 ? A HIS 2 3 1 Y 1 A MET 26 ? A MET 3 4 1 Y 1 A GLU 27 ? A GLU 4 5 1 Y 1 A GLN 28 ? A GLN 5 6 1 Y 1 A THR 29 ? A THR 6 7 1 Y 1 A SER 30 ? A SER 7 8 1 Y 1 A GLY 124 ? A GLY 101 9 1 Y 1 A GLY 125 ? A GLY 102 10 1 Y 1 A LYS 126 ? A LYS 103 11 1 Y 1 A ALA 127 ? A ALA 104 12 1 Y 1 B GLY 24 ? B GLY 1 13 1 Y 1 B HIS 25 ? B HIS 2 14 1 Y 1 B MET 26 ? B MET 3 15 1 Y 1 B GLU 27 ? B GLU 4 16 1 Y 1 B GLN 28 ? B GLN 5 17 1 Y 1 B THR 29 ? B THR 6 18 1 Y 1 B SER 30 ? B SER 7 19 1 Y 1 B ILE 31 ? B ILE 8 20 1 Y 1 B GLY 124 ? B GLY 101 21 1 Y 1 B GLY 125 ? B GLY 102 22 1 Y 1 B LYS 126 ? B LYS 103 23 1 Y 1 B ALA 127 ? B ALA 104 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #