HEADER OXIDOREDUCTASE 18-DEC-12 3ZGJ TITLE S221M V223F Y359A MUTANT OF 4-HYDROXYMANDELATE SYNTHASE FROM TITLE 2 STREPTOMYCES COELICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYPHENYLPYRUVIC ACID DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-HYDROXYMANDELATE SYNTHASE; COMPND 5 EC: 1.13.11.46; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE, DIOXYGENASE, NON-HEME IRON OXYGENASE, BENZYLIC KEYWDS 2 HYDROXYLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.PRATTER,G.STRAGANZ,G.GROGAN REVDAT 2 20-DEC-23 3ZGJ 1 REMARK LINK REVDAT 1 30-OCT-13 3ZGJ 0 JRNL AUTH S.PRATTER,C.KONSTANTINOVICS,C.L.M.DIGIURO,E.LEITNER,D.KUMAR, JRNL AUTH 2 S.P.DE VISSER,G.GROGAN,G.STRAGANZ JRNL TITL INVERSION OF ENANTIOSELECTIVITY OF A MONONUCLEAR NON-HEME JRNL TITL 2 IRON(II)-DEPENDENT HYDROXYLASE BY TUNING THE INTERPLAY OF JRNL TITL 3 METAL CENTER GEOMETRY AND PROTEIN STRUCTURE JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 52 9677 2013 JRNL REFN ISSN 1433-7851 JRNL PMID 23881738 JRNL DOI 10.1002/ANGE.201304633 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4191 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5051 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 531 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.268 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5197 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7090 ; 2.002 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 665 ; 6.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;33.114 ;22.669 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;14.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;18.129 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 798 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4083 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2675 ; 3.494 ; 3.249 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3332 ; 4.683 ; 4.837 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2522 ; 4.594 ; 3.574 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 61.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2R5V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MICROLITRE 10 MG ML-1 HMS VARIANT, REMARK 280 PREINCUBATED WITH 1.25 MM COCL2 AND 2.5 MM R-MANDELATE) PLUS 1 REMARK 280 MICROLITRE MOTHER LIQUOR. THE BEST CRYSTALS WERE ROUTINELY REMARK 280 OBTAINED IN CRYSTAL DROPS CONTAINING 0.05 M TRIS/CL PH 9.0, 0.1 REMARK 280 M MGCL2, 7.5% (W/V) PEG 4K AND 2.5% (V/V) 2-METHYL-1,4- REMARK 280 PENTANEDIOL., PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 PHE A 5 REMARK 465 PRO A 6 REMARK 465 PHE A 7 REMARK 465 LEU A 8 REMARK 465 HIS A 9 REMARK 465 TRP A 10 REMARK 465 ARG A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 MET A 14 REMARK 465 PRO A 122 REMARK 465 SER A 123 REMARK 465 HIS A 124 REMARK 465 ARG A 125 REMARK 465 ALA A 126 REMARK 465 GLY A 127 REMARK 465 GLN A 128 REMARK 465 ASP A 129 REMARK 465 ALA A 130 REMARK 465 TRP A 131 REMARK 465 ALA A 149 REMARK 465 ASP A 150 REMARK 465 GLY A 151 REMARK 465 ASP A 152 REMARK 465 GLY A 153 REMARK 465 ALA A 154 REMARK 465 GLY A 155 REMARK 465 THR A 295 REMARK 465 GLU A 296 REMARK 465 ARG A 297 REMARK 465 VAL A 298 REMARK 465 GLY A 299 REMARK 465 ALA A 300 REMARK 465 MET A 301 REMARK 465 ALA A 302 REMARK 465 ASP A 303 REMARK 465 VAL A 368 REMARK 465 ALA A 369 REMARK 465 GLY A 370 REMARK 465 ARG A 371 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 PHE B 5 REMARK 465 PRO B 6 REMARK 465 PHE B 7 REMARK 465 LEU B 8 REMARK 465 HIS B 9 REMARK 465 TRP B 10 REMARK 465 ARG B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 149 REMARK 465 ASP B 150 REMARK 465 GLY B 151 REMARK 465 ASP B 152 REMARK 465 GLY B 153 REMARK 465 ALA B 154 REMARK 465 GLY B 155 REMARK 465 ARG B 297 REMARK 465 VAL B 298 REMARK 465 GLY B 299 REMARK 465 ALA B 300 REMARK 465 VAL B 368 REMARK 465 ALA B 369 REMARK 465 GLY B 370 REMARK 465 ARG B 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 ARG A 317 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 ARG A 366 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 MET B 14 CG SD CE REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 ASP B 129 CG OD1 OD2 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 MET B 301 CG SD CE REMARK 470 ASP B 303 CG OD1 OD2 REMARK 470 TYR B 322 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2079 O HOH B 2249 2.01 REMARK 500 O HOH A 2073 O HOH A 2079 2.05 REMARK 500 NH2 ARG B 30 O HOH B 2023 2.09 REMARK 500 O HOH A 2079 O HOH A 2142 2.11 REMARK 500 OD1 ASP B 38 O HOH B 2043 2.13 REMARK 500 OE2 GLU A 310 O HOH A 2194 2.16 REMARK 500 O HOH A 2079 O HOH B 2251 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 162 N - CA - CB ANGL. DEV. = -20.7 DEGREES REMARK 500 LEU A 166 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ASP A 240 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 240 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU B 24 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP B 94 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 101 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 161 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 161 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 112 1.76 -64.47 REMARK 500 PRO A 120 69.59 -52.63 REMARK 500 ARG A 242 -169.99 -122.57 REMARK 500 THR A 336 -87.91 -104.91 REMARK 500 ASN A 345 69.04 -113.58 REMARK 500 TYR B 206 129.90 -39.27 REMARK 500 THR B 295 46.37 120.56 REMARK 500 ASP B 318 -165.08 -112.28 REMARK 500 THR B 336 -91.38 -101.03 REMARK 500 ASN B 345 66.32 -118.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2035 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B2069 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B2165 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH B2309 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B2310 DISTANCE = 7.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1368 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 181 NE2 REMARK 620 2 HIS A 261 NE2 114.1 REMARK 620 3 GLU A 340 OE1 96.6 89.2 REMARK 620 4 RMN A1369 O8 92.5 87.4 171.0 REMARK 620 5 RMN A1369 O12 112.7 132.4 94.0 82.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B1368 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 181 NE2 REMARK 620 2 HIS B 261 NE2 116.7 REMARK 620 3 GLU B 340 OE1 104.0 95.8 REMARK 620 4 RMN B1369 O12 114.0 123.9 93.8 REMARK 620 5 RMN B1369 O8 93.1 87.9 158.4 66.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RMN B 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RMN A 1369 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SER221MET VAL223PHE TYR359ALA MUTATIONS DBREF 3ZGJ A 1 371 UNP Q9Z4X7 Q9Z4X7_STRCO 1 371 DBREF 3ZGJ B 1 371 UNP Q9Z4X7 Q9Z4X7_STRCO 1 371 SEQADV 3ZGJ MET A 221 UNP Q9Z4X7 SER 221 ENGINEERED MUTATION SEQADV 3ZGJ PHE A 223 UNP Q9Z4X7 VAL 223 ENGINEERED MUTATION SEQADV 3ZGJ ALA A 359 UNP Q9Z4X7 TYR 359 ENGINEERED MUTATION SEQADV 3ZGJ MET B 221 UNP Q9Z4X7 SER 221 ENGINEERED MUTATION SEQADV 3ZGJ PHE B 223 UNP Q9Z4X7 VAL 223 ENGINEERED MUTATION SEQADV 3ZGJ ALA B 359 UNP Q9Z4X7 TYR 359 ENGINEERED MUTATION SEQRES 1 A 371 MET LEU PRO PRO PHE PRO PHE LEU HIS TRP ARG ALA ALA SEQRES 2 A 371 MET PRO PRO SER ASP ILE ALA TYR ALA GLU LEU TYR VAL SEQRES 3 A 371 ALA ASP ASP ARG GLU ALA SER GLY PHE LEU VAL ASP SER SEQRES 4 A 371 LEU GLY PHE VAL PRO LEU ALA VAL ALA GLY PRO ALA THR SEQRES 5 A 371 GLY THR HIS ASP ARG ARG SER THR VAL LEU ARG SER GLY SEQRES 6 A 371 GLU VAL THR LEU VAL VAL THR GLN ALA LEU ALA PRO ASP SEQRES 7 A 371 THR PRO VAL ALA ARG TYR VAL GLU ARG HIS GLY ASP SER SEQRES 8 A 371 ILE ALA ASP LEU ALA PHE GLY CYS ASP ASP VAL ARG SER SEQRES 9 A 371 CYS PHE ASP ARG ALA VAL LEU ALA GLY ALA GLU ALA LEU SEQRES 10 A 371 GLN ALA PRO THR PRO SER HIS ARG ALA GLY GLN ASP ALA SEQRES 11 A 371 TRP PHE ALA THR VAL SER GLY PHE GLY ASP ILE ARG HIS SEQRES 12 A 371 THR LEU VAL PRO ALA ALA ASP GLY ASP GLY ALA GLY LEU SEQRES 13 A 371 LEU PRO PRO ASP ARG ASP TRP ALA LEU LEU PRO ALA ALA SEQRES 14 A 371 THR GLY ARG THR GLY PRO ARG PRO LEU LEU ASP HIS VAL SEQRES 15 A 371 ALA VAL CYS LEU GLU SER GLY THR LEU ARG SER THR ALA SEQRES 16 A 371 GLU PHE TYR GLU ALA ALA PHE ASP MET PRO TYR TYR SER SEQRES 17 A 371 SER GLU TYR ILE GLU VAL GLY GLU GLN ALA MET ASP MET SEQRES 18 A 371 ILE PHE VAL ARG ASN ALA GLY GLY GLY ILE THR PHE THR SEQRES 19 A 371 LEU ILE GLU PRO ASP ASP THR ARG VAL PRO GLY GLN ILE SEQRES 20 A 371 ASP GLN PHE LEU SER ALA HIS ASP GLY PRO GLY VAL GLN SEQRES 21 A 371 HIS LEU ALA PHE LEU VAL ASP ASP ILE VAL GLY SER VAL SEQRES 22 A 371 ARG SER LEU GLY ASP ARG GLY VAL ALA PHE LEU ARG THR SEQRES 23 A 371 PRO GLY ALA TYR TYR ASP LEU LEU THR GLU ARG VAL GLY SEQRES 24 A 371 ALA MET ALA ASP ALA ILE GLU ASP LEU ARG GLU THR ASN SEQRES 25 A 371 VAL LEU ALA ASP ARG ASP GLU TRP GLY TYR LEU LEU GLN SEQRES 26 A 371 ILE PHE THR ARG SER PRO TYR PRO ARG GLY THR LEU PHE SEQRES 27 A 371 TYR GLU TYR ILE GLN ARG ASN GLY ALA ARG GLY PHE GLY SEQRES 28 A 371 SER SER ASN ILE LYS ALA LEU ALA GLU ALA VAL GLU ARG SEQRES 29 A 371 GLU ARG GLU VAL ALA GLY ARG SEQRES 1 B 371 MET LEU PRO PRO PHE PRO PHE LEU HIS TRP ARG ALA ALA SEQRES 2 B 371 MET PRO PRO SER ASP ILE ALA TYR ALA GLU LEU TYR VAL SEQRES 3 B 371 ALA ASP ASP ARG GLU ALA SER GLY PHE LEU VAL ASP SER SEQRES 4 B 371 LEU GLY PHE VAL PRO LEU ALA VAL ALA GLY PRO ALA THR SEQRES 5 B 371 GLY THR HIS ASP ARG ARG SER THR VAL LEU ARG SER GLY SEQRES 6 B 371 GLU VAL THR LEU VAL VAL THR GLN ALA LEU ALA PRO ASP SEQRES 7 B 371 THR PRO VAL ALA ARG TYR VAL GLU ARG HIS GLY ASP SER SEQRES 8 B 371 ILE ALA ASP LEU ALA PHE GLY CYS ASP ASP VAL ARG SER SEQRES 9 B 371 CYS PHE ASP ARG ALA VAL LEU ALA GLY ALA GLU ALA LEU SEQRES 10 B 371 GLN ALA PRO THR PRO SER HIS ARG ALA GLY GLN ASP ALA SEQRES 11 B 371 TRP PHE ALA THR VAL SER GLY PHE GLY ASP ILE ARG HIS SEQRES 12 B 371 THR LEU VAL PRO ALA ALA ASP GLY ASP GLY ALA GLY LEU SEQRES 13 B 371 LEU PRO PRO ASP ARG ASP TRP ALA LEU LEU PRO ALA ALA SEQRES 14 B 371 THR GLY ARG THR GLY PRO ARG PRO LEU LEU ASP HIS VAL SEQRES 15 B 371 ALA VAL CYS LEU GLU SER GLY THR LEU ARG SER THR ALA SEQRES 16 B 371 GLU PHE TYR GLU ALA ALA PHE ASP MET PRO TYR TYR SER SEQRES 17 B 371 SER GLU TYR ILE GLU VAL GLY GLU GLN ALA MET ASP MET SEQRES 18 B 371 ILE PHE VAL ARG ASN ALA GLY GLY GLY ILE THR PHE THR SEQRES 19 B 371 LEU ILE GLU PRO ASP ASP THR ARG VAL PRO GLY GLN ILE SEQRES 20 B 371 ASP GLN PHE LEU SER ALA HIS ASP GLY PRO GLY VAL GLN SEQRES 21 B 371 HIS LEU ALA PHE LEU VAL ASP ASP ILE VAL GLY SER VAL SEQRES 22 B 371 ARG SER LEU GLY ASP ARG GLY VAL ALA PHE LEU ARG THR SEQRES 23 B 371 PRO GLY ALA TYR TYR ASP LEU LEU THR GLU ARG VAL GLY SEQRES 24 B 371 ALA MET ALA ASP ALA ILE GLU ASP LEU ARG GLU THR ASN SEQRES 25 B 371 VAL LEU ALA ASP ARG ASP GLU TRP GLY TYR LEU LEU GLN SEQRES 26 B 371 ILE PHE THR ARG SER PRO TYR PRO ARG GLY THR LEU PHE SEQRES 27 B 371 TYR GLU TYR ILE GLN ARG ASN GLY ALA ARG GLY PHE GLY SEQRES 28 B 371 SER SER ASN ILE LYS ALA LEU ALA GLU ALA VAL GLU ARG SEQRES 29 B 371 GLU ARG GLU VAL ALA GLY ARG HET CO A1368 1 HET RMN A1369 11 HET CO B1368 1 HET RMN B1369 11 HETNAM CO COBALT (II) ION HETNAM RMN (R)-MANDELIC ACID FORMUL 3 CO 2(CO 2+) FORMUL 4 RMN 2(C8 H8 O3) FORMUL 7 HOH *531(H2 O) HELIX 1 1 ASP A 28 SER A 39 1 12 HELIX 2 2 GLY A 49 GLY A 53 5 5 HELIX 3 3 THR A 79 GLY A 89 1 11 HELIX 4 4 ASP A 101 ALA A 112 1 12 HELIX 5 5 PRO A 167 GLY A 171 5 5 HELIX 6 6 THR A 190 ASP A 203 1 14 HELIX 7 7 GLY A 245 ASP A 255 1 11 HELIX 8 8 ASP A 268 ARG A 279 1 12 HELIX 9 9 PRO A 287 LEU A 294 1 8 HELIX 10 10 ALA A 304 ASN A 312 1 9 HELIX 11 11 GLY A 351 GLU A 367 1 17 HELIX 12 12 ASP B 28 SER B 39 1 12 HELIX 13 13 GLY B 49 GLY B 53 5 5 HELIX 14 14 THR B 79 GLY B 89 1 11 HELIX 15 15 ASP B 101 ALA B 112 1 12 HELIX 16 16 PRO B 167 GLY B 171 5 5 HELIX 17 17 THR B 190 ASP B 203 1 14 HELIX 18 18 GLY B 245 HIS B 254 1 10 HELIX 19 19 ASP B 268 ARG B 279 1 12 HELIX 20 20 PRO B 287 LEU B 294 1 8 HELIX 21 21 MET B 301 ASN B 312 1 12 HELIX 22 22 GLY B 351 GLU B 367 1 17 SHEET 1 AA 9 ALA A 116 GLN A 118 0 SHEET 2 AA 9 ALA A 133 SER A 136 -1 O THR A 134 N LEU A 117 SHEET 3 AA 9 ARG A 142 PRO A 147 -1 O HIS A 143 N VAL A 135 SHEET 4 AA 9 SER A 91 CYS A 99 1 O ALA A 93 N ARG A 142 SHEET 5 AA 9 ASP A 18 VAL A 26 -1 O ASP A 18 N GLY A 98 SHEET 6 AA 9 VAL A 67 ALA A 74 1 O THR A 68 N ALA A 22 SHEET 7 AA 9 ARG A 57 SER A 64 -1 O ARG A 58 N GLN A 73 SHEET 8 AA 9 VAL A 43 ALA A 48 -1 O VAL A 43 N ARG A 63 SHEET 9 AA 9 ALA A 164 LEU A 165 -1 O ALA A 164 N VAL A 47 SHEET 1 AB 8 TYR A 206 VAL A 214 0 SHEET 2 AB 8 GLN A 217 ARG A 225 -1 O GLN A 217 N VAL A 214 SHEET 3 AB 8 THR A 232 PRO A 238 -1 O PHE A 233 N VAL A 224 SHEET 4 AB 8 LEU A 178 CYS A 185 1 O VAL A 182 N THR A 234 SHEET 5 AB 8 GLY A 258 LEU A 265 -1 O GLY A 258 N CYS A 185 SHEET 6 AB 8 PHE A 338 ARG A 344 1 O PHE A 338 N LEU A 262 SHEET 7 AB 8 GLY A 321 PHE A 327 -1 O LEU A 324 N GLN A 343 SHEET 8 AB 8 LEU A 314 ASP A 318 -1 O LEU A 314 N GLN A 325 SHEET 1 BA 9 ALA B 116 PRO B 122 0 SHEET 2 BA 9 TRP B 131 SER B 136 -1 O PHE B 132 N THR B 121 SHEET 3 BA 9 ARG B 142 PRO B 147 -1 O HIS B 143 N VAL B 135 SHEET 4 BA 9 SER B 91 CYS B 99 1 O ALA B 93 N ARG B 142 SHEET 5 BA 9 ASP B 18 VAL B 26 -1 O ASP B 18 N GLY B 98 SHEET 6 BA 9 VAL B 67 ALA B 74 1 O THR B 68 N ALA B 22 SHEET 7 BA 9 ARG B 57 SER B 64 -1 O ARG B 58 N GLN B 73 SHEET 8 BA 9 VAL B 43 ALA B 48 -1 O VAL B 43 N ARG B 63 SHEET 9 BA 9 ALA B 164 LEU B 165 -1 O ALA B 164 N VAL B 47 SHEET 1 BB 8 TYR B 206 VAL B 214 0 SHEET 2 BB 8 GLN B 217 ARG B 225 -1 O GLN B 217 N VAL B 214 SHEET 3 BB 8 THR B 232 PRO B 238 -1 O PHE B 233 N VAL B 224 SHEET 4 BB 8 LEU B 178 CYS B 185 1 O VAL B 182 N THR B 234 SHEET 5 BB 8 GLY B 258 LEU B 265 -1 O GLY B 258 N CYS B 185 SHEET 6 BB 8 PHE B 338 ARG B 344 1 O PHE B 338 N LEU B 262 SHEET 7 BB 8 GLY B 321 PHE B 327 -1 O LEU B 324 N GLN B 343 SHEET 8 BB 8 LEU B 314 ASP B 318 -1 O LEU B 314 N GLN B 325 SSBOND 1 CYS B 99 CYS B 105 1555 1555 2.29 LINK NE2 HIS A 181 CO CO A1368 1555 1555 2.08 LINK NE2 HIS A 261 CO CO A1368 1555 1555 2.11 LINK OE1 GLU A 340 CO CO A1368 1555 1555 2.06 LINK CO CO A1368 O8 RMN A1369 1555 1555 2.34 LINK CO CO A1368 O12 RMN A1369 1555 1555 2.06 LINK NE2 HIS B 181 CO CO B1368 1555 1555 2.05 LINK NE2 HIS B 261 CO CO B1368 1555 1555 2.07 LINK OE1 GLU B 340 CO CO B1368 1555 1555 1.77 LINK CO CO B1368 O12 RMN B1369 1555 1555 2.10 LINK CO CO B1368 O8 RMN B1369 1555 1555 2.33 CISPEP 1 ARG A 176 PRO A 177 0 -5.99 CISPEP 2 ARG B 176 PRO B 177 0 -2.46 SITE 1 AC1 4 HIS B 181 HIS B 261 GLU B 340 RMN B1369 SITE 1 AC2 4 HIS A 181 HIS A 261 GLU A 340 RMN A1369 SITE 1 AC3 10 HIS B 181 THR B 234 ILE B 236 HIS B 261 SITE 2 AC3 10 GLN B 325 GLU B 340 PHE B 350 ILE B 355 SITE 3 AC3 10 CO B1368 HOH B2232 SITE 1 AC4 8 HIS A 181 THR A 234 HIS A 261 GLN A 325 SITE 2 AC4 8 GLU A 340 PHE A 350 ILE A 355 CO A1368 CRYST1 122.870 122.870 54.860 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018228 0.00000