HEADER CELL ADHESION 20-DEC-12 3ZH5 TITLE THE STRUCTURE OF HAEMOPHILUS INFLUENZAE PROTEIN E COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN E; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR B.SINGH,T.AL-JUBAIR,K.RIESBECK,M.M.G.M.THUNNISSEN REVDAT 5 20-NOV-24 3ZH5 1 REMARK REVDAT 4 17-JAN-18 3ZH5 1 REMARK ATOM REVDAT 3 15-MAY-13 3ZH5 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 2 17-APR-13 3ZH5 1 JRNL REVDAT 1 20-MAR-13 3ZH5 0 JRNL AUTH B.SINGH,T.AL-JUBAIR,M.MORGELIN,M.M.THUNNISSEN,K.RIESBECK JRNL TITL THE UNIQUE STRUCTURE OF HAEMOPHILUS INFLUENZAE PROTEIN E JRNL TITL 2 REVEALS MULTIPLE BINDING SITES FOR HOST FACTORS. JRNL REF INFECT.IMMUN. V. 81 801 2013 JRNL REFN ISSN 0019-9567 JRNL PMID 23275089 JRNL DOI 10.1128/IAI.01111-12 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.9332 - 3.8761 0.99 2733 156 0.1781 0.2048 REMARK 3 2 3.8761 - 3.0780 1.00 2688 157 0.1929 0.2257 REMARK 3 3 3.0780 - 2.6893 1.00 2695 144 0.2024 0.2294 REMARK 3 4 2.6893 - 2.4436 1.00 2681 134 0.2103 0.2379 REMARK 3 5 2.4436 - 2.2685 1.00 2682 136 0.1968 0.2243 REMARK 3 6 2.2685 - 2.1349 1.00 2694 132 0.1940 0.2463 REMARK 3 7 2.1349 - 2.0280 1.00 2691 137 0.1989 0.2356 REMARK 3 8 2.0280 - 1.9397 1.00 2678 123 0.2343 0.2439 REMARK 3 9 1.9397 - 1.8651 0.99 2659 152 0.2689 0.2829 REMARK 3 10 1.8651 - 1.8007 0.97 2552 155 0.3582 0.3891 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 59.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.79730 REMARK 3 B22 (A**2) : -14.24820 REMARK 3 B33 (A**2) : 19.04550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.71600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2236 REMARK 3 ANGLE : 1.419 3026 REMARK 3 CHIRALITY : 0.086 322 REMARK 3 PLANARITY : 0.008 387 REMARK 3 DIHEDRAL : 15.803 825 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 26:45) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5479 -21.5958 14.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.6368 T22: 0.4123 REMARK 3 T33: 0.5552 T12: -0.1399 REMARK 3 T13: 0.0594 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 7.1201 L22: 6.4850 REMARK 3 L33: 2.9147 L12: -0.2273 REMARK 3 L13: 2.8554 L23: -0.5289 REMARK 3 S TENSOR REMARK 3 S11: 0.7387 S12: -0.9678 S13: 0.0023 REMARK 3 S21: 1.4506 S22: -0.3904 S23: 0.4879 REMARK 3 S31: 0.4308 S32: 0.1205 S33: -0.2119 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 46:73) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7345 -8.4538 3.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.1823 REMARK 3 T33: 0.3156 T12: -0.0277 REMARK 3 T13: -0.0077 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 3.6251 L22: 7.8743 REMARK 3 L33: 8.1694 L12: -2.0837 REMARK 3 L13: 2.6814 L23: -6.4735 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: 0.0250 S13: 0.1671 REMARK 3 S21: 0.0525 S22: 0.0086 S23: 0.7577 REMARK 3 S31: 0.0967 S32: -0.0680 S33: -0.0668 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 74:89) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9281 -15.2418 24.7365 REMARK 3 T TENSOR REMARK 3 T11: 1.4849 T22: 0.4325 REMARK 3 T33: 0.4809 T12: -0.1606 REMARK 3 T13: -0.3899 T23: -0.1454 REMARK 3 L TENSOR REMARK 3 L11: 1.0265 L22: 1.1951 REMARK 3 L33: 0.6792 L12: 0.6163 REMARK 3 L13: -0.0697 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.4485 S12: -0.5855 S13: 0.1718 REMARK 3 S21: 1.4369 S22: -0.0314 S23: -0.5637 REMARK 3 S31: 0.3160 S32: 0.3861 S33: -0.4520 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 90:117) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8076 -9.2292 7.8014 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.1383 REMARK 3 T33: 0.2004 T12: -0.0280 REMARK 3 T13: 0.0136 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 4.0323 L22: 4.6354 REMARK 3 L33: 5.2393 L12: 0.7578 REMARK 3 L13: -0.2590 L23: -1.5182 REMARK 3 S TENSOR REMARK 3 S11: 0.1562 S12: -0.1586 S13: 0.2023 REMARK 3 S21: 0.6472 S22: -0.1458 S23: 0.3909 REMARK 3 S31: 0.2756 S32: 0.0180 S33: -0.0256 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 118:129) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2105 -5.0228 15.8783 REMARK 3 T TENSOR REMARK 3 T11: 0.6036 T22: 0.4237 REMARK 3 T33: 0.2923 T12: -0.1537 REMARK 3 T13: -0.0110 T23: -0.1102 REMARK 3 L TENSOR REMARK 3 L11: 1.6445 L22: 2.3276 REMARK 3 L33: 7.8200 L12: -1.8965 REMARK 3 L13: 0.7635 L23: -1.8929 REMARK 3 S TENSOR REMARK 3 S11: 0.2115 S12: -0.7662 S13: 0.4252 REMARK 3 S21: 1.2302 S22: -0.6026 S23: -0.1868 REMARK 3 S31: -0.4396 S32: 1.1972 S33: 0.1610 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 130:150) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5641 -15.3650 -3.1757 REMARK 3 T TENSOR REMARK 3 T11: 0.2728 T22: 0.2460 REMARK 3 T33: 0.5740 T12: -0.0086 REMARK 3 T13: -0.0637 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 5.3569 L22: 1.6604 REMARK 3 L33: 0.7907 L12: 1.3828 REMARK 3 L13: -0.4014 L23: 0.5342 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: 0.5602 S13: -1.0832 REMARK 3 S21: 0.0067 S22: -0.0471 S23: 0.5299 REMARK 3 S31: 0.2952 S32: -0.0893 S33: 0.0740 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 151:158) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9381 -10.5974 -9.0034 REMARK 3 T TENSOR REMARK 3 T11: 0.8066 T22: 0.8477 REMARK 3 T33: 1.0794 T12: -0.1262 REMARK 3 T13: -0.3786 T23: -0.1630 REMARK 3 L TENSOR REMARK 3 L11: 3.9491 L22: 9.6312 REMARK 3 L33: 4.3419 L12: -4.1868 REMARK 3 L13: -1.5044 L23: -2.7943 REMARK 3 S TENSOR REMARK 3 S11: 0.2449 S12: 1.7154 S13: -0.8860 REMARK 3 S21: -2.2570 S22: -0.4177 S23: 0.8298 REMARK 3 S31: 1.1117 S32: -2.0853 S33: -0.0346 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 25:48) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3512 22.1120 14.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.7369 T22: 0.3706 REMARK 3 T33: 0.4625 T12: -0.0390 REMARK 3 T13: 0.0203 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.3824 L22: 3.8748 REMARK 3 L33: 5.9653 L12: -0.6740 REMARK 3 L13: -3.4516 L23: 2.4984 REMARK 3 S TENSOR REMARK 3 S11: 0.2876 S12: -0.5123 S13: 0.2124 REMARK 3 S21: 1.5293 S22: -0.1622 S23: 0.0955 REMARK 3 S31: -0.6236 S32: -0.2584 S33: -0.2276 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 49:64) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2398 5.8412 1.7442 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.2035 REMARK 3 T33: 0.4007 T12: -0.0354 REMARK 3 T13: 0.0055 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.2049 L22: 8.3277 REMARK 3 L33: 6.8437 L12: -2.3206 REMARK 3 L13: -1.2820 L23: 6.2166 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0739 S13: -0.1870 REMARK 3 S21: 0.0395 S22: 0.1305 S23: -0.8393 REMARK 3 S31: -0.0662 S32: 0.2287 S33: -0.1341 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 65:102) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1675 11.6255 12.9308 REMARK 3 T TENSOR REMARK 3 T11: 0.5271 T22: 0.2225 REMARK 3 T33: 0.1928 T12: -0.0232 REMARK 3 T13: 0.0924 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.7036 L22: 2.7302 REMARK 3 L33: 2.7026 L12: 0.2921 REMARK 3 L13: -0.0364 L23: 0.0893 REMARK 3 S TENSOR REMARK 3 S11: 0.1718 S12: -0.4906 S13: -0.1113 REMARK 3 S21: 0.9158 S22: -0.0667 S23: 0.0908 REMARK 3 S31: -0.6407 S32: -0.0905 S33: 0.0333 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 103:129) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6551 8.0724 13.9928 REMARK 3 T TENSOR REMARK 3 T11: 0.4790 T22: 0.1863 REMARK 3 T33: 0.3033 T12: -0.0500 REMARK 3 T13: 0.0151 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 4.5286 L22: 2.8713 REMARK 3 L33: 8.6453 L12: 1.3768 REMARK 3 L13: 1.3744 L23: 1.1063 REMARK 3 S TENSOR REMARK 3 S11: 0.2147 S12: -0.5238 S13: -0.5212 REMARK 3 S21: 1.0294 S22: -0.3198 S23: -0.0727 REMARK 3 S31: -0.1583 S32: -0.3835 S33: 0.0531 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 130:150) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4639 15.5990 -3.1098 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.2499 REMARK 3 T33: 0.5363 T12: 0.0154 REMARK 3 T13: 0.0481 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 4.3134 L22: 5.5182 REMARK 3 L33: 1.4769 L12: 2.4467 REMARK 3 L13: -0.1404 L23: -1.7119 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.5494 S13: 1.2556 REMARK 3 S21: 0.1509 S22: 0.1332 S23: 0.0632 REMARK 3 S31: -0.4794 S32: -0.1563 S33: -0.0734 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 151:156) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7592 10.9764 -8.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.9718 T22: 0.6898 REMARK 3 T33: 0.8456 T12: 0.1683 REMARK 3 T13: 0.3953 T23: 0.0944 REMARK 3 L TENSOR REMARK 3 L11: 7.4518 L22: 1.9948 REMARK 3 L33: 7.5851 L12: -4.2415 REMARK 3 L13: -3.3546 L23: -6.0409 REMARK 3 S TENSOR REMARK 3 S11: 1.0048 S12: 1.2977 S13: 0.8044 REMARK 3 S21: -3.1606 S22: -1.3450 S23: -1.1114 REMARK 3 S31: -1.0976 S32: -0.4870 S33: 0.1999 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STRUCTURE WAS SOLVED WITH SE_MET FORM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SPG BUFFER PH 6.0, 25% W/V REMARK 280 POLYETHYLENE GLYCOL 1500. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.62900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 25 REMARK 465 VAL A 157 REMARK 465 VAL B 157 REMARK 465 ASP B 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 ASN B 26 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 42 O HOH B 2006 1.48 REMARK 500 HA THR A 139 O HOH A 2005 1.51 REMARK 500 HH11 ARG B 42 O VAL B 47 1.59 REMARK 500 O HOH A 2024 O HOH A 2043 1.85 REMARK 500 O HOH B 2021 O HOH B 2051 1.87 REMARK 500 O THR A 139 O HOH A 2005 1.90 REMARK 500 NE ARG B 42 O HOH B 2006 1.95 REMARK 500 O VAL B 44 O HOH B 2008 2.00 REMARK 500 O HOH B 2013 O HOH B 2016 2.01 REMARK 500 O1 EDO B 1157 O HOH A 2039 2.06 REMARK 500 O TYR A 151 O HOH A 2058 2.08 REMARK 500 NH1 ARG B 42 O VAL B 47 2.12 REMARK 500 CA THR A 139 O HOH A 2005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2059 O HOH B 2057 2545 1.94 REMARK 500 O HOH A 2050 O HOH B 2023 2645 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 -14.35 79.43 REMARK 500 PRO B 63 -6.78 -59.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1160 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZH6 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HAEMOPHILUS INFLUENZAE SE_MET FORM OF PROTEIN E DBREF 3ZH5 A 26 158 UNP C4F5U7 C4F5U7_HAEIF 26 158 DBREF 3ZH5 B 26 158 UNP C4F5U7 C4F5U7_HAEIF 26 158 SEQADV 3ZH5 ASN A 25 UNP C4F5U7 EXPRESSION TAG SEQADV 3ZH5 ASN B 25 UNP C4F5U7 EXPRESSION TAG SEQRES 1 A 134 ASN ASN ASP MET LYS LEU ALA PRO PRO THR ASP VAL ARG SEQRES 2 A 134 SER GLY TYR ILE ARG LEU VAL LYS ASN VAL ASN TYR TYR SEQRES 3 A 134 ILE ASP SER GLU SER ILE TRP VAL ASP ASN GLN GLU PRO SEQRES 4 A 134 GLN ILE VAL HIS PHE ASP ALA VAL VAL ASN LEU ASP LYS SEQRES 5 A 134 GLY LEU TYR VAL TYR PRO GLU PRO LYS ARG TYR ALA ARG SEQRES 6 A 134 SER VAL ARG GLN TYR LYS ILE LEU ASN CYS ALA ASN TYR SEQRES 7 A 134 HIS LEU THR GLN VAL ARG THR ASP PHE TYR ASP GLU PHE SEQRES 8 A 134 TRP GLY GLN GLY LEU ARG ALA ALA PRO LYS LYS GLN LYS SEQRES 9 A 134 LYS HIS THR LEU SER LEU THR PRO ASP THR THR LEU TYR SEQRES 10 A 134 ASN ALA ALA GLN ILE ILE CYS ALA ASN TYR GLY LYS ALA SEQRES 11 A 134 PHE SER VAL ASP SEQRES 1 B 134 ASN ASN ASP MET LYS LEU ALA PRO PRO THR ASP VAL ARG SEQRES 2 B 134 SER GLY TYR ILE ARG LEU VAL LYS ASN VAL ASN TYR TYR SEQRES 3 B 134 ILE ASP SER GLU SER ILE TRP VAL ASP ASN GLN GLU PRO SEQRES 4 B 134 GLN ILE VAL HIS PHE ASP ALA VAL VAL ASN LEU ASP LYS SEQRES 5 B 134 GLY LEU TYR VAL TYR PRO GLU PRO LYS ARG TYR ALA ARG SEQRES 6 B 134 SER VAL ARG GLN TYR LYS ILE LEU ASN CYS ALA ASN TYR SEQRES 7 B 134 HIS LEU THR GLN VAL ARG THR ASP PHE TYR ASP GLU PHE SEQRES 8 B 134 TRP GLY GLN GLY LEU ARG ALA ALA PRO LYS LYS GLN LYS SEQRES 9 B 134 LYS HIS THR LEU SER LEU THR PRO ASP THR THR LEU TYR SEQRES 10 B 134 ASN ALA ALA GLN ILE ILE CYS ALA ASN TYR GLY LYS ALA SEQRES 11 B 134 PHE SER VAL ASP HET EDO A1159 10 HET GOL A1160 14 HET EDO B1157 10 HET GOL B1158 14 HET GOL B1159 14 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *127(H2 O) HELIX 1 1 THR A 138 TYR A 151 1 14 HELIX 2 2 THR B 138 TYR B 151 1 14 SHEET 1 AA 6 TYR A 40 LEU A 43 0 SHEET 2 AA 6 ASN A 46 VAL A 58 -1 N ASN A 46 O LEU A 43 SHEET 3 AA 6 ILE A 65 LEU A 78 -1 O HIS A 67 N TRP A 57 SHEET 4 AA 6 ALA A 88 ASN A 98 -1 O ALA A 88 N LEU A 78 SHEET 5 AA 6 HIS A 103 GLU A 114 -1 O HIS A 103 N ASN A 98 SHEET 6 AA 6 GLN A 118 ALA A 122 -1 O GLN A 118 N GLU A 114 SHEET 1 AB 6 TYR A 40 LEU A 43 0 SHEET 2 AB 6 ASN A 46 VAL A 58 -1 N ASN A 46 O LEU A 43 SHEET 3 AB 6 ILE A 65 LEU A 78 -1 O HIS A 67 N TRP A 57 SHEET 4 AB 6 ALA A 88 ASN A 98 -1 O ALA A 88 N LEU A 78 SHEET 5 AB 6 HIS A 103 GLU A 114 -1 O HIS A 103 N ASN A 98 SHEET 6 AB 6 HIS A 130 SER A 133 -1 O HIS A 130 N GLN A 106 SHEET 1 AC 2 GLN A 118 ALA A 122 0 SHEET 2 AC 2 HIS A 103 GLU A 114 -1 O PHE A 111 N ALA A 122 SHEET 1 BA 6 TYR B 40 LEU B 43 0 SHEET 2 BA 6 ASN B 46 VAL B 58 -1 N ASN B 46 O LEU B 43 SHEET 3 BA 6 ILE B 65 LEU B 78 -1 O HIS B 67 N TRP B 57 SHEET 4 BA 6 ALA B 88 ASN B 98 -1 O ALA B 88 N LEU B 78 SHEET 5 BA 6 HIS B 103 GLU B 114 -1 O HIS B 103 N ASN B 98 SHEET 6 BA 6 GLN B 118 ALA B 122 -1 O GLN B 118 N GLU B 114 SHEET 1 BB 6 TYR B 40 LEU B 43 0 SHEET 2 BB 6 ASN B 46 VAL B 58 -1 N ASN B 46 O LEU B 43 SHEET 3 BB 6 ILE B 65 LEU B 78 -1 O HIS B 67 N TRP B 57 SHEET 4 BB 6 ALA B 88 ASN B 98 -1 O ALA B 88 N LEU B 78 SHEET 5 BB 6 HIS B 103 GLU B 114 -1 O HIS B 103 N ASN B 98 SHEET 6 BB 6 HIS B 130 SER B 133 -1 O HIS B 130 N GLN B 106 SHEET 1 BC 2 GLN B 118 ALA B 122 0 SHEET 2 BC 2 HIS B 103 GLU B 114 -1 O PHE B 111 N ALA B 122 SSBOND 1 CYS A 99 CYS A 148 1555 1555 2.11 SSBOND 2 CYS B 99 CYS B 148 1555 1555 2.08 SITE 1 AC1 6 THR A 105 THR A 131 HOH A2039 ASP B 59 SITE 2 AC1 6 ILE B 65 HIS B 67 SITE 1 AC2 5 ASP A 59 ILE A 65 HIS A 67 HOH A2061 SITE 2 AC2 5 THR B 105 SITE 1 AC3 2 THR B 109 PHE B 111 SITE 1 AC4 6 VAL B 44 ASP B 137 THR B 138 TYR B 141 SITE 2 AC4 6 ASN B 142 GLN B 145 SITE 1 AC5 6 ASP A 137 THR A 138 TYR A 141 ASN A 142 SITE 2 AC5 6 GLN A 145 HOH A2052 CRYST1 44.187 57.258 61.374 90.00 96.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022631 0.000000 0.002399 0.00000 SCALE2 0.000000 0.017465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016385 0.00000 MTRIX1 1 -0.999500 0.006400 0.029300 21.97320 1 MTRIX2 1 -0.006900 -0.999800 -0.016900 0.38100 1 MTRIX3 1 0.029200 -0.017100 0.999400 -0.30570 1