data_3ZHN # _entry.id 3ZHN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZHN PDBE EBI-55267 WWPDB D_1290055267 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZHN _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-12-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robb, C.S.' 1 'Assmus, M.' 2 'Nano, F.E.' 3 'Boraston, A.B.' 4 # _citation.id primary _citation.title 'Structure of the T6Ss Lipoprotein Tssj1 from Pseudomonas Aeruginosa.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 69 _citation.page_first 607 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23722835 _citation.pdbx_database_id_DOI 10.1107/S1744309113012220 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Robb, C.S.' 1 primary 'Assmus, M.' 2 primary 'Nano, F.E.' 3 primary 'Boraston, A.B.' 4 # _cell.entry_id 3ZHN _cell.length_a 38.315 _cell.length_b 41.637 _cell.length_c 76.947 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZHN _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PA_0080 17564.656 1 ? ? 'RESIDUES 17-154' ? 2 non-polymer syn 'IODIDE ION' 126.904 12 ? ? ? ? 3 water nat water 18.015 147 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTDNAQ STLGGDLVEQDEFLLRPGEERRIERTLDEQTRQLGFVAAYRDLDRATWRQVLDVPGQRTSHLDITLGAQAIGIVARPAP ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTDNAQ STLGGDLVEQDEFLLRPGEERRIERTLDEQTRQLGFVAAYRDLDRATWRQVLDVPGQRTSHLDITLGAQAIGIVARPAP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 SER n 1 23 SER n 1 24 SER n 1 25 PRO n 1 26 PRO n 1 27 GLU n 1 28 THR n 1 29 PRO n 1 30 PRO n 1 31 THR n 1 32 ARG n 1 33 VAL n 1 34 VAL n 1 35 ILE n 1 36 TRP n 1 37 LEU n 1 38 HIS n 1 39 ALA n 1 40 ALA n 1 41 PRO n 1 42 ASN n 1 43 LEU n 1 44 ASN n 1 45 PRO n 1 46 SER n 1 47 ALA n 1 48 ALA n 1 49 GLY n 1 50 GLN n 1 51 ALA n 1 52 ALA n 1 53 PRO n 1 54 LEU n 1 55 ARG n 1 56 LEU n 1 57 ARG n 1 58 LEU n 1 59 TYR n 1 60 GLU n 1 61 LEU n 1 62 LYS n 1 63 LYS n 1 64 ASP n 1 65 THR n 1 66 ALA n 1 67 PHE n 1 68 GLY n 1 69 ARG n 1 70 ALA n 1 71 ASP n 1 72 TYR n 1 73 PHE n 1 74 ALA n 1 75 LEU n 1 76 THR n 1 77 ASP n 1 78 ASN n 1 79 ALA n 1 80 GLN n 1 81 SER n 1 82 THR n 1 83 LEU n 1 84 GLY n 1 85 GLY n 1 86 ASP n 1 87 LEU n 1 88 VAL n 1 89 GLU n 1 90 GLN n 1 91 ASP n 1 92 GLU n 1 93 PHE n 1 94 LEU n 1 95 LEU n 1 96 ARG n 1 97 PRO n 1 98 GLY n 1 99 GLU n 1 100 GLU n 1 101 ARG n 1 102 ARG n 1 103 ILE n 1 104 GLU n 1 105 ARG n 1 106 THR n 1 107 LEU n 1 108 ASP n 1 109 GLU n 1 110 GLN n 1 111 THR n 1 112 ARG n 1 113 GLN n 1 114 LEU n 1 115 GLY n 1 116 PHE n 1 117 VAL n 1 118 ALA n 1 119 ALA n 1 120 TYR n 1 121 ARG n 1 122 ASP n 1 123 LEU n 1 124 ASP n 1 125 ARG n 1 126 ALA n 1 127 THR n 1 128 TRP n 1 129 ARG n 1 130 GLN n 1 131 VAL n 1 132 LEU n 1 133 ASP n 1 134 VAL n 1 135 PRO n 1 136 GLY n 1 137 GLN n 1 138 ARG n 1 139 THR n 1 140 SER n 1 141 HIS n 1 142 LEU n 1 143 ASP n 1 144 ILE n 1 145 THR n 1 146 LEU n 1 147 GLY n 1 148 ALA n 1 149 GLN n 1 150 ALA n 1 151 ILE n 1 152 GLY n 1 153 ILE n 1 154 VAL n 1 155 ALA n 1 156 ARG n 1 157 PRO n 1 158 ALA n 1 159 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PAO1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PSEUDOMONAS AERUGINOSA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208964 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 47085D-5 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9I752_PSEAE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9I752 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZHN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9I752 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 138 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZHN MET A 1 ? UNP Q9I752 ? ? 'expression tag' -20 1 1 3ZHN GLY A 2 ? UNP Q9I752 ? ? 'expression tag' -19 2 1 3ZHN SER A 3 ? UNP Q9I752 ? ? 'expression tag' -18 3 1 3ZHN SER A 4 ? UNP Q9I752 ? ? 'expression tag' -17 4 1 3ZHN HIS A 5 ? UNP Q9I752 ? ? 'expression tag' -16 5 1 3ZHN HIS A 6 ? UNP Q9I752 ? ? 'expression tag' -15 6 1 3ZHN HIS A 7 ? UNP Q9I752 ? ? 'expression tag' -14 7 1 3ZHN HIS A 8 ? UNP Q9I752 ? ? 'expression tag' -13 8 1 3ZHN HIS A 9 ? UNP Q9I752 ? ? 'expression tag' -12 9 1 3ZHN HIS A 10 ? UNP Q9I752 ? ? 'expression tag' -11 10 1 3ZHN SER A 11 ? UNP Q9I752 ? ? 'expression tag' -10 11 1 3ZHN SER A 12 ? UNP Q9I752 ? ? 'expression tag' -9 12 1 3ZHN GLY A 13 ? UNP Q9I752 ? ? 'expression tag' -8 13 1 3ZHN LEU A 14 ? UNP Q9I752 ? ? 'expression tag' -7 14 1 3ZHN VAL A 15 ? UNP Q9I752 ? ? 'expression tag' -6 15 1 3ZHN PRO A 16 ? UNP Q9I752 ? ? 'expression tag' -5 16 1 3ZHN ARG A 17 ? UNP Q9I752 ? ? 'expression tag' -4 17 1 3ZHN GLY A 18 ? UNP Q9I752 ? ? 'expression tag' -3 18 1 3ZHN SER A 19 ? UNP Q9I752 ? ? 'expression tag' -2 19 1 3ZHN HIS A 20 ? UNP Q9I752 ? ? 'expression tag' -1 20 1 3ZHN MET A 21 ? UNP Q9I752 ? ? 'expression tag' 0 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZHN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2 _exptl_crystal.density_percent_sol 38 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2M FORMATE, 15% PEG 5K MME' # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 2011-03-01 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZHN _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.24 _reflns.d_resolution_high 1.40 _reflns.number_obs 24682 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.27 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all 87.0 _reflns_shell.Rmerge_I_obs 0.46 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 5.61 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZHN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 23337 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.75 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 98.41 _refine.ls_R_factor_obs 0.16330 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16127 _refine.ls_R_factor_R_free 0.20187 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1242 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 16.635 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.67 _refine.aniso_B[3][3] 0.68 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.070 _refine.pdbx_overall_ESU_R_Free 0.065 _refine.overall_SU_ML 0.040 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.302 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1003 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 147 _refine_hist.number_atoms_total 1162 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 22.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.019 ? 1033 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 989 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.978 1.971 ? 1411 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.887 3.000 ? 2255 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.102 5.000 ? 132 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.894 22.708 ? 48 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.211 15.000 ? 158 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.898 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.131 0.200 ? 161 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.021 ? 1191 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 241 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 4.698 3.000 ? 2021 'X-RAY DIFFRACTION' ? r_sphericity_free 44.785 5.000 ? 55 'X-RAY DIFFRACTION' ? r_sphericity_bonded 15.705 5.000 ? 2105 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.number_reflns_R_work 1487 _refine_ls_shell.R_factor_R_work 0.600 _refine_ls_shell.percent_reflns_obs 85.38 _refine_ls_shell.R_factor_R_free 0.664 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3ZHN _struct.title 'Crystal structure of the T6SS lipoprotein TssJ1 from Pseudomonas aeruginosa' _struct.pdbx_descriptor PA_0080 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZHN _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, PATHOGEN, TYPE VI SECRETION SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 64 ? ALA A 70 ? ASP A 43 ALA A 49 1 ? 7 HELX_P HELX_P2 2 ASP A 71 ? ASN A 78 ? ASP A 50 ASN A 57 1 ? 8 HELX_P HELX_P3 3 ASN A 78 ? GLY A 84 ? ASN A 57 GLY A 63 1 ? 7 HELX_P HELX_P4 4 ASP A 122 ? ALA A 126 ? ASP A 101 ALA A 105 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 158 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 137 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 159 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 138 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.15 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 100 ? LEU A 107 ? GLU A 79 LEU A 86 AA 2 THR A 31 ? ALA A 39 ? THR A 10 ALA A 18 AA 3 THR A 139 ? LEU A 146 ? THR A 118 LEU A 125 AA 4 ILE A 151 ? ALA A 155 ? ILE A 130 ALA A 134 AB 1 LEU A 87 ? LEU A 95 ? LEU A 66 LEU A 74 AB 2 LEU A 54 ? LEU A 61 ? LEU A 33 LEU A 40 AB 3 GLN A 113 ? ALA A 118 ? GLN A 92 ALA A 97 AB 4 ARG A 129 ? ASP A 133 ? ARG A 108 ASP A 112 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 107 ? N LEU A 86 O THR A 31 ? O THR A 10 AA 2 3 N VAL A 34 ? N VAL A 13 O SER A 140 ? O SER A 119 AA 3 4 N THR A 145 ? N THR A 124 O GLY A 152 ? O GLY A 131 AB 1 2 N LEU A 95 ? N LEU A 74 O LEU A 54 ? O LEU A 33 AB 2 3 N LEU A 61 ? N LEU A 40 O GLN A 113 ? O GLN A 92 AB 3 4 N PHE A 116 ? N PHE A 95 O GLN A 130 ? O GLN A 109 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1139' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 1140' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1141' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IOD A 1142' AC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 1143' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IOD A 1144' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1145' AC8 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1147' AC9 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 1148' BC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1149' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ALA A 148 ? ALA A 127 . ? 1_555 ? 2 AC1 2 GLN A 149 ? GLN A 128 . ? 1_555 ? 3 AC2 1 TRP A 128 ? TRP A 107 . ? 1_555 ? 4 AC3 2 ASP A 71 ? ASP A 50 . ? 1_555 ? 5 AC3 2 ARG A 138 ? ARG A 117 . ? 1_455 ? 6 AC4 3 TRP A 128 ? TRP A 107 . ? 1_555 ? 7 AC4 3 HOH N . ? HOH A 2116 . ? 1_555 ? 8 AC4 3 HOH N . ? HOH A 2117 . ? 1_555 ? 9 AC5 1 THR A 139 ? THR A 118 . ? 1_455 ? 10 AC6 3 THR A 65 ? THR A 44 . ? 1_555 ? 11 AC6 3 HOH N . ? HOH A 2007 . ? 1_565 ? 12 AC6 3 HOH N . ? HOH A 2018 . ? 1_565 ? 13 AC7 2 ARG A 69 ? ARG A 48 . ? 1_555 ? 14 AC7 2 HOH N . ? HOH A 2033 . ? 1_555 ? 15 AC8 2 HOH N . ? HOH A 2028 . ? 1_555 ? 16 AC8 2 HOH N . ? HOH A 2118 . ? 1_555 ? 17 AC9 1 GLU A 99 ? GLU A 78 . ? 1_555 ? 18 BC1 2 GLN A 80 ? GLN A 59 . ? 1_555 ? 19 BC1 2 ARG A 96 ? ARG A 75 . ? 2_555 ? # _database_PDB_matrix.entry_id 3ZHN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZHN _atom_sites.fract_transf_matrix[1][1] 0.026099 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024017 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012996 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H I N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -20 ? ? ? A . n A 1 2 GLY 2 -19 ? ? ? A . n A 1 3 SER 3 -18 ? ? ? A . n A 1 4 SER 4 -17 ? ? ? A . n A 1 5 HIS 5 -16 ? ? ? A . n A 1 6 HIS 6 -15 ? ? ? A . n A 1 7 HIS 7 -14 ? ? ? A . n A 1 8 HIS 8 -13 ? ? ? A . n A 1 9 HIS 9 -12 ? ? ? A . n A 1 10 HIS 10 -11 ? ? ? A . n A 1 11 SER 11 -10 ? ? ? A . n A 1 12 SER 12 -9 ? ? ? A . n A 1 13 GLY 13 -8 ? ? ? A . n A 1 14 LEU 14 -7 ? ? ? A . n A 1 15 VAL 15 -6 ? ? ? A . n A 1 16 PRO 16 -5 ? ? ? A . n A 1 17 ARG 17 -4 ? ? ? A . n A 1 18 GLY 18 -3 ? ? ? A . n A 1 19 SER 19 -2 ? ? ? A . n A 1 20 HIS 20 -1 ? ? ? A . n A 1 21 MET 21 0 ? ? ? A . n A 1 22 SER 22 1 ? ? ? A . n A 1 23 SER 23 2 ? ? ? A . n A 1 24 SER 24 3 ? ? ? A . n A 1 25 PRO 25 4 ? ? ? A . n A 1 26 PRO 26 5 ? ? ? A . n A 1 27 GLU 27 6 ? ? ? A . n A 1 28 THR 28 7 ? ? ? A . n A 1 29 PRO 29 8 8 PRO PRO A . n A 1 30 PRO 30 9 9 PRO PRO A . n A 1 31 THR 31 10 10 THR THR A . n A 1 32 ARG 32 11 11 ARG ARG A . n A 1 33 VAL 33 12 12 VAL VAL A . n A 1 34 VAL 34 13 13 VAL VAL A . n A 1 35 ILE 35 14 14 ILE ILE A . n A 1 36 TRP 36 15 15 TRP TRP A . n A 1 37 LEU 37 16 16 LEU LEU A . n A 1 38 HIS 38 17 17 HIS HIS A . n A 1 39 ALA 39 18 18 ALA ALA A . n A 1 40 ALA 40 19 19 ALA ALA A . n A 1 41 PRO 41 20 20 PRO PRO A . n A 1 42 ASN 42 21 21 ASN ASN A . n A 1 43 LEU 43 22 22 LEU LEU A . n A 1 44 ASN 44 23 23 ASN ASN A . n A 1 45 PRO 45 24 24 PRO PRO A . n A 1 46 SER 46 25 25 SER SER A . n A 1 47 ALA 47 26 26 ALA ALA A . n A 1 48 ALA 48 27 27 ALA ALA A . n A 1 49 GLY 49 28 28 GLY GLY A . n A 1 50 GLN 50 29 29 GLN GLN A . n A 1 51 ALA 51 30 30 ALA ALA A . n A 1 52 ALA 52 31 31 ALA ALA A . n A 1 53 PRO 53 32 32 PRO PRO A . n A 1 54 LEU 54 33 33 LEU LEU A . n A 1 55 ARG 55 34 34 ARG ARG A . n A 1 56 LEU 56 35 35 LEU LEU A . n A 1 57 ARG 57 36 36 ARG ARG A . n A 1 58 LEU 58 37 37 LEU LEU A . n A 1 59 TYR 59 38 38 TYR TYR A . n A 1 60 GLU 60 39 39 GLU GLU A . n A 1 61 LEU 61 40 40 LEU LEU A . n A 1 62 LYS 62 41 41 LYS LYS A . n A 1 63 LYS 63 42 42 LYS LYS A . n A 1 64 ASP 64 43 43 ASP ASP A . n A 1 65 THR 65 44 44 THR THR A . n A 1 66 ALA 66 45 45 ALA ALA A . n A 1 67 PHE 67 46 46 PHE PHE A . n A 1 68 GLY 68 47 47 GLY GLY A . n A 1 69 ARG 69 48 48 ARG ARG A . n A 1 70 ALA 70 49 49 ALA ALA A . n A 1 71 ASP 71 50 50 ASP ASP A . n A 1 72 TYR 72 51 51 TYR TYR A . n A 1 73 PHE 73 52 52 PHE PHE A . n A 1 74 ALA 74 53 53 ALA ALA A . n A 1 75 LEU 75 54 54 LEU LEU A . n A 1 76 THR 76 55 55 THR THR A . n A 1 77 ASP 77 56 56 ASP ASP A . n A 1 78 ASN 78 57 57 ASN ASN A . n A 1 79 ALA 79 58 58 ALA ALA A . n A 1 80 GLN 80 59 59 GLN GLN A . n A 1 81 SER 81 60 60 SER SER A . n A 1 82 THR 82 61 61 THR THR A . n A 1 83 LEU 83 62 62 LEU LEU A . n A 1 84 GLY 84 63 63 GLY GLY A . n A 1 85 GLY 85 64 64 GLY GLY A . n A 1 86 ASP 86 65 65 ASP ASP A . n A 1 87 LEU 87 66 66 LEU LEU A . n A 1 88 VAL 88 67 67 VAL VAL A . n A 1 89 GLU 89 68 68 GLU GLU A . n A 1 90 GLN 90 69 69 GLN GLN A . n A 1 91 ASP 91 70 70 ASP ASP A . n A 1 92 GLU 92 71 71 GLU GLU A . n A 1 93 PHE 93 72 72 PHE PHE A . n A 1 94 LEU 94 73 73 LEU LEU A . n A 1 95 LEU 95 74 74 LEU LEU A . n A 1 96 ARG 96 75 75 ARG ARG A . n A 1 97 PRO 97 76 76 PRO PRO A . n A 1 98 GLY 98 77 77 GLY GLY A . n A 1 99 GLU 99 78 78 GLU GLU A . n A 1 100 GLU 100 79 79 GLU GLU A . n A 1 101 ARG 101 80 80 ARG ARG A . n A 1 102 ARG 102 81 81 ARG ARG A . n A 1 103 ILE 103 82 82 ILE ILE A . n A 1 104 GLU 104 83 83 GLU GLU A . n A 1 105 ARG 105 84 84 ARG ARG A . n A 1 106 THR 106 85 85 THR THR A . n A 1 107 LEU 107 86 86 LEU LEU A . n A 1 108 ASP 108 87 87 ASP ASP A . n A 1 109 GLU 109 88 88 GLU GLU A . n A 1 110 GLN 110 89 89 GLN GLN A . n A 1 111 THR 111 90 90 THR THR A . n A 1 112 ARG 112 91 91 ARG ARG A . n A 1 113 GLN 113 92 92 GLN GLN A . n A 1 114 LEU 114 93 93 LEU LEU A . n A 1 115 GLY 115 94 94 GLY GLY A . n A 1 116 PHE 116 95 95 PHE PHE A . n A 1 117 VAL 117 96 96 VAL VAL A . n A 1 118 ALA 118 97 97 ALA ALA A . n A 1 119 ALA 119 98 98 ALA ALA A . n A 1 120 TYR 120 99 99 TYR TYR A . n A 1 121 ARG 121 100 100 ARG ARG A . n A 1 122 ASP 122 101 101 ASP ASP A . n A 1 123 LEU 123 102 102 LEU LEU A . n A 1 124 ASP 124 103 103 ASP ASP A . n A 1 125 ARG 125 104 104 ARG ARG A . n A 1 126 ALA 126 105 105 ALA ALA A . n A 1 127 THR 127 106 106 THR THR A . n A 1 128 TRP 128 107 107 TRP TRP A . n A 1 129 ARG 129 108 108 ARG ARG A . n A 1 130 GLN 130 109 109 GLN GLN A . n A 1 131 VAL 131 110 110 VAL VAL A . n A 1 132 LEU 132 111 111 LEU LEU A . n A 1 133 ASP 133 112 112 ASP ASP A . n A 1 134 VAL 134 113 113 VAL VAL A . n A 1 135 PRO 135 114 114 PRO PRO A . n A 1 136 GLY 136 115 115 GLY GLY A . n A 1 137 GLN 137 116 116 GLN GLN A . n A 1 138 ARG 138 117 117 ARG ARG A . n A 1 139 THR 139 118 118 THR THR A . n A 1 140 SER 140 119 119 SER SER A . n A 1 141 HIS 141 120 120 HIS HIS A . n A 1 142 LEU 142 121 121 LEU LEU A . n A 1 143 ASP 143 122 122 ASP ASP A . n A 1 144 ILE 144 123 123 ILE ILE A . n A 1 145 THR 145 124 124 THR THR A . n A 1 146 LEU 146 125 125 LEU LEU A . n A 1 147 GLY 147 126 126 GLY GLY A . n A 1 148 ALA 148 127 127 ALA ALA A . n A 1 149 GLN 149 128 128 GLN GLN A . n A 1 150 ALA 150 129 129 ALA ALA A . n A 1 151 ILE 151 130 130 ILE ILE A . n A 1 152 GLY 152 131 131 GLY GLY A . n A 1 153 ILE 153 132 132 ILE ILE A . n A 1 154 VAL 154 133 133 VAL VAL A . n A 1 155 ALA 155 134 134 ALA ALA A . n A 1 156 ARG 156 135 135 ARG ARG A . n A 1 157 PRO 157 136 136 PRO PRO A . n A 1 158 ALA 158 137 137 ALA ALA A . n A 1 159 PRO 159 138 138 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 1139 1139 IOD IOD A . C 2 IOD 1 1140 1140 IOD IOD A . D 2 IOD 1 1141 1141 IOD IOD A . E 2 IOD 1 1142 1142 IOD IOD A . F 2 IOD 1 1143 1143 IOD IOD A . G 2 IOD 1 1144 1144 IOD IOD A . H 2 IOD 1 1145 1145 IOD IOD A . I 2 IOD 1 1146 1146 IOD IOD A . J 2 IOD 1 1147 1147 IOD IOD A . K 2 IOD 1 1148 1148 IOD IOD A . L 2 IOD 1 1149 1149 IOD IOD A . M 2 IOD 1 1150 1150 IOD IOD A . N 3 HOH 1 2001 2001 HOH HOH A . N 3 HOH 2 2002 2002 HOH HOH A . N 3 HOH 3 2003 2003 HOH HOH A . N 3 HOH 4 2004 2004 HOH HOH A . N 3 HOH 5 2005 2005 HOH HOH A . N 3 HOH 6 2006 2006 HOH HOH A . N 3 HOH 7 2007 2007 HOH HOH A . N 3 HOH 8 2008 2008 HOH HOH A . N 3 HOH 9 2009 2009 HOH HOH A . N 3 HOH 10 2010 2010 HOH HOH A . N 3 HOH 11 2011 2011 HOH HOH A . N 3 HOH 12 2012 2012 HOH HOH A . N 3 HOH 13 2013 2013 HOH HOH A . N 3 HOH 14 2014 2014 HOH HOH A . N 3 HOH 15 2015 2015 HOH HOH A . N 3 HOH 16 2016 2016 HOH HOH A . N 3 HOH 17 2017 2017 HOH HOH A . N 3 HOH 18 2018 2018 HOH HOH A . N 3 HOH 19 2019 2019 HOH HOH A . N 3 HOH 20 2020 2020 HOH HOH A . N 3 HOH 21 2021 2021 HOH HOH A . N 3 HOH 22 2022 2022 HOH HOH A . N 3 HOH 23 2023 2023 HOH HOH A . N 3 HOH 24 2024 2024 HOH HOH A . N 3 HOH 25 2025 2025 HOH HOH A . N 3 HOH 26 2026 2026 HOH HOH A . N 3 HOH 27 2027 2027 HOH HOH A . N 3 HOH 28 2028 2028 HOH HOH A . N 3 HOH 29 2029 2029 HOH HOH A . N 3 HOH 30 2030 2030 HOH HOH A . N 3 HOH 31 2031 2031 HOH HOH A . N 3 HOH 32 2032 2032 HOH HOH A . N 3 HOH 33 2033 2033 HOH HOH A . N 3 HOH 34 2034 2034 HOH HOH A . N 3 HOH 35 2035 2035 HOH HOH A . N 3 HOH 36 2036 2036 HOH HOH A . N 3 HOH 37 2037 2037 HOH HOH A . N 3 HOH 38 2038 2038 HOH HOH A . N 3 HOH 39 2039 2039 HOH HOH A . N 3 HOH 40 2040 2040 HOH HOH A . N 3 HOH 41 2041 2041 HOH HOH A . N 3 HOH 42 2042 2042 HOH HOH A . N 3 HOH 43 2043 2043 HOH HOH A . N 3 HOH 44 2044 2044 HOH HOH A . N 3 HOH 45 2045 2045 HOH HOH A . N 3 HOH 46 2046 2046 HOH HOH A . N 3 HOH 47 2047 2047 HOH HOH A . N 3 HOH 48 2048 2048 HOH HOH A . N 3 HOH 49 2049 2049 HOH HOH A . N 3 HOH 50 2050 2050 HOH HOH A . N 3 HOH 51 2051 2051 HOH HOH A . N 3 HOH 52 2052 2052 HOH HOH A . N 3 HOH 53 2053 2053 HOH HOH A . N 3 HOH 54 2054 2054 HOH HOH A . N 3 HOH 55 2055 2055 HOH HOH A . N 3 HOH 56 2056 2056 HOH HOH A . N 3 HOH 57 2057 2057 HOH HOH A . N 3 HOH 58 2058 2058 HOH HOH A . N 3 HOH 59 2059 2059 HOH HOH A . N 3 HOH 60 2060 2060 HOH HOH A . N 3 HOH 61 2061 2061 HOH HOH A . N 3 HOH 62 2062 2062 HOH HOH A . N 3 HOH 63 2063 2063 HOH HOH A . N 3 HOH 64 2064 2064 HOH HOH A . N 3 HOH 65 2065 2065 HOH HOH A . N 3 HOH 66 2066 2066 HOH HOH A . N 3 HOH 67 2067 2067 HOH HOH A . N 3 HOH 68 2068 2068 HOH HOH A . N 3 HOH 69 2069 2069 HOH HOH A . N 3 HOH 70 2070 2070 HOH HOH A . N 3 HOH 71 2071 2071 HOH HOH A . N 3 HOH 72 2072 2072 HOH HOH A . N 3 HOH 73 2073 2073 HOH HOH A . N 3 HOH 74 2074 2074 HOH HOH A . N 3 HOH 75 2075 2075 HOH HOH A . N 3 HOH 76 2076 2076 HOH HOH A . N 3 HOH 77 2077 2077 HOH HOH A . N 3 HOH 78 2078 2078 HOH HOH A . N 3 HOH 79 2079 2079 HOH HOH A . N 3 HOH 80 2080 2080 HOH HOH A . N 3 HOH 81 2081 2081 HOH HOH A . N 3 HOH 82 2082 2082 HOH HOH A . N 3 HOH 83 2083 2083 HOH HOH A . N 3 HOH 84 2084 2084 HOH HOH A . N 3 HOH 85 2085 2085 HOH HOH A . N 3 HOH 86 2086 2086 HOH HOH A . N 3 HOH 87 2087 2087 HOH HOH A . N 3 HOH 88 2088 2088 HOH HOH A . N 3 HOH 89 2089 2089 HOH HOH A . N 3 HOH 90 2090 2090 HOH HOH A . N 3 HOH 91 2091 2091 HOH HOH A . N 3 HOH 92 2092 2092 HOH HOH A . N 3 HOH 93 2093 2093 HOH HOH A . N 3 HOH 94 2094 2094 HOH HOH A . N 3 HOH 95 2095 2095 HOH HOH A . N 3 HOH 96 2096 2096 HOH HOH A . N 3 HOH 97 2097 2097 HOH HOH A . N 3 HOH 98 2098 2098 HOH HOH A . N 3 HOH 99 2099 2099 HOH HOH A . N 3 HOH 100 2100 2100 HOH HOH A . N 3 HOH 101 2101 2101 HOH HOH A . N 3 HOH 102 2102 2102 HOH HOH A . N 3 HOH 103 2103 2103 HOH HOH A . N 3 HOH 104 2104 2104 HOH HOH A . N 3 HOH 105 2105 2105 HOH HOH A . N 3 HOH 106 2106 2106 HOH HOH A . N 3 HOH 107 2107 2107 HOH HOH A . N 3 HOH 108 2108 2108 HOH HOH A . N 3 HOH 109 2109 2109 HOH HOH A . N 3 HOH 110 2110 2110 HOH HOH A . N 3 HOH 111 2111 2111 HOH HOH A . N 3 HOH 112 2112 2112 HOH HOH A . N 3 HOH 113 2113 2113 HOH HOH A . N 3 HOH 114 2114 2114 HOH HOH A . N 3 HOH 115 2115 2115 HOH HOH A . N 3 HOH 116 2116 2116 HOH HOH A . N 3 HOH 117 2117 2117 HOH HOH A . N 3 HOH 118 2118 2118 HOH HOH A . N 3 HOH 119 2119 2119 HOH HOH A . N 3 HOH 120 2120 2120 HOH HOH A . N 3 HOH 121 2121 2121 HOH HOH A . N 3 HOH 122 2122 2122 HOH HOH A . N 3 HOH 123 2123 2123 HOH HOH A . N 3 HOH 124 2124 2124 HOH HOH A . N 3 HOH 125 2125 2125 HOH HOH A . N 3 HOH 126 2126 2126 HOH HOH A . N 3 HOH 127 2127 2127 HOH HOH A . N 3 HOH 128 2128 2128 HOH HOH A . N 3 HOH 129 2129 2129 HOH HOH A . N 3 HOH 130 2130 2130 HOH HOH A . N 3 HOH 131 2131 2131 HOH HOH A . N 3 HOH 132 2132 2132 HOH HOH A . N 3 HOH 133 2133 2133 HOH HOH A . N 3 HOH 134 2134 2134 HOH HOH A . N 3 HOH 135 2135 2135 HOH HOH A . N 3 HOH 136 2136 2136 HOH HOH A . N 3 HOH 137 2137 2137 HOH HOH A . N 3 HOH 138 2138 2138 HOH HOH A . N 3 HOH 139 2139 2139 HOH HOH A . N 3 HOH 140 2140 2140 HOH HOH A . N 3 HOH 141 2141 2141 HOH HOH A . N 3 HOH 142 2142 2142 HOH HOH A . N 3 HOH 143 2143 2143 HOH HOH A . N 3 HOH 144 2144 2144 HOH HOH A . N 3 HOH 145 2145 2145 HOH HOH A . N 3 HOH 146 2146 2146 HOH HOH A . N 3 HOH 147 2147 2147 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2005 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id N _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal d*TREK 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELX phasing . ? 3 PHASER phasing . ? 4 REFMAC refinement 5.7.0029 ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2125 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2141 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 1.63 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 83 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 83 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.333 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.081 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 84 ? ? CZ A ARG 84 ? ? NH1 A ARG 84 ? ? 124.17 120.30 3.87 0.50 N 2 1 CB A ASP 103 ? ? CG A ASP 103 ? ? OD1 A ASP 103 ? ? 124.51 118.30 6.21 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 23 ? ? 36.75 61.09 2 1 GLN A 128 ? ? -146.12 20.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 34 ? NE ? A ARG 55 NE 2 1 Y 1 A ARG 34 ? CZ ? A ARG 55 CZ 3 1 Y 1 A ARG 34 ? NH1 ? A ARG 55 NH1 4 1 Y 1 A ARG 34 ? NH2 ? A ARG 55 NH2 5 1 Y 1 A ARG 36 ? CG ? A ARG 57 CG 6 1 Y 1 A ARG 36 ? CD ? A ARG 57 CD 7 1 Y 1 A ARG 36 ? NE ? A ARG 57 NE 8 1 Y 1 A ARG 36 ? CZ ? A ARG 57 CZ 9 1 Y 1 A ARG 36 ? NH1 ? A ARG 57 NH1 10 1 Y 1 A ARG 36 ? NH2 ? A ARG 57 NH2 11 1 Y 1 A LYS 42 ? CE ? A LYS 63 CE 12 1 Y 1 A LYS 42 ? NZ ? A LYS 63 NZ 13 1 Y 1 A ASN 57 ? CG ? A ASN 78 CG 14 1 Y 1 A ASN 57 ? OD1 ? A ASN 78 OD1 15 1 Y 1 A ASN 57 ? ND2 ? A ASN 78 ND2 16 1 Y 1 A GLU 88 ? CG ? A GLU 109 CG 17 1 Y 1 A GLU 88 ? CD ? A GLU 109 CD 18 1 Y 1 A GLU 88 ? OE1 ? A GLU 109 OE1 19 1 Y 1 A GLU 88 ? OE2 ? A GLU 109 OE2 20 1 Y 1 A GLN 89 ? CG ? A GLN 110 CG 21 1 Y 1 A GLN 89 ? CD ? A GLN 110 CD 22 1 Y 1 A GLN 89 ? OE1 ? A GLN 110 OE1 23 1 Y 1 A GLN 89 ? NE2 ? A GLN 110 NE2 24 1 Y 1 A ARG 91 ? NE ? A ARG 112 NE 25 1 Y 1 A ARG 91 ? CZ ? A ARG 112 CZ 26 1 Y 1 A ARG 91 ? NH1 ? A ARG 112 NH1 27 1 Y 1 A ARG 91 ? NH2 ? A ARG 112 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -20 ? A MET 1 2 1 Y 1 A GLY -19 ? A GLY 2 3 1 Y 1 A SER -18 ? A SER 3 4 1 Y 1 A SER -17 ? A SER 4 5 1 Y 1 A HIS -16 ? A HIS 5 6 1 Y 1 A HIS -15 ? A HIS 6 7 1 Y 1 A HIS -14 ? A HIS 7 8 1 Y 1 A HIS -13 ? A HIS 8 9 1 Y 1 A HIS -12 ? A HIS 9 10 1 Y 1 A HIS -11 ? A HIS 10 11 1 Y 1 A SER -10 ? A SER 11 12 1 Y 1 A SER -9 ? A SER 12 13 1 Y 1 A GLY -8 ? A GLY 13 14 1 Y 1 A LEU -7 ? A LEU 14 15 1 Y 1 A VAL -6 ? A VAL 15 16 1 Y 1 A PRO -5 ? A PRO 16 17 1 Y 1 A ARG -4 ? A ARG 17 18 1 Y 1 A GLY -3 ? A GLY 18 19 1 Y 1 A SER -2 ? A SER 19 20 1 Y 1 A HIS -1 ? A HIS 20 21 1 Y 1 A MET 0 ? A MET 21 22 1 Y 1 A SER 1 ? A SER 22 23 1 Y 1 A SER 2 ? A SER 23 24 1 Y 1 A SER 3 ? A SER 24 25 1 Y 1 A PRO 4 ? A PRO 25 26 1 Y 1 A PRO 5 ? A PRO 26 27 1 Y 1 A GLU 6 ? A GLU 27 28 1 Y 1 A THR 7 ? A THR 28 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 water HOH #