HEADER OXIDOREDUCTASE 23-DEC-12 3ZHO TITLE X-RAY STRUCTURE OF E.COLI WRBA IN COMPLEX WITH FMN AT 1.2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVOPROTEIN WRBA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRP REPRESSOR-BINDING PROTEIN; COMPND 5 EC: 1.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE, TRP REPRESSOR, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR I.KISHKO,M.LAPKOUSKI,J.BRYNDA,M.KUTY,J.CAREY,I.K.SMATANOVA,R.ETTRICH REVDAT 3 20-DEC-23 3ZHO 1 REMARK LINK REVDAT 2 11-SEP-13 3ZHO 1 JRNL REVDAT 1 28-AUG-13 3ZHO 0 JRNL AUTH I.KISHKO,J.CAREY,D.REHA,J.BRYNDA,R.WINKLER,B.HARISH, JRNL AUTH 2 R.GUERRA,O.ETTRICHOVA,Z.KUKACKA,O.SHERYEMYETYEVA,P.NOVAK, JRNL AUTH 3 M.KUTY,I.KUTA SMATANOVA,R.ETTRICH,M.LAPKOUSKI JRNL TITL 1.2 A RESOLUTION CRYSTAL STRUCTURE OF ESCHERICHIA COLI WRBA JRNL TITL 2 HOLOPROTEIN JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1757 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23999298 JRNL DOI 10.1107/S0907444913017162 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 92773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5236 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.166 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2976 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2752 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4079 ; 1.373 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6340 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;33.632 ;23.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;11.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;10.667 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3357 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 637 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5728 ; 2.725 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 77 ;30.721 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5894 ;11.155 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 22.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2R97 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WRBA-FAD AT A CONCENTRATION OF 5 MG/ML REMARK 280 IN 20 MM TRIS PH 6.5 CRYSTALLYZED AGAINST WELL CONTAINING 28% REMARK 280 PEG 3350 AND 0.05 M BIS-TRIS-HCL, PH 6.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.79500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.57500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.39750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.57500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.19250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.39750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 127.19250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 ALA B 143 REMARK 465 ALA B 144 REMARK 465 GLN B 145 REMARK 465 GLU B 146 REMARK 465 LEU B 147 REMARK 465 PHE B 148 REMARK 465 ASP B 149 REMARK 465 VAL B 150 REMARK 465 SER B 151 REMARK 465 GLN B 152 REMARK 465 VAL B 153 REMARK 465 ARG B 154 REMARK 465 GLY B 155 REMARK 465 GLY B 167 REMARK 465 ASP B 168 REMARK 465 GLY B 169 REMARK 465 SER B 170 REMARK 465 ARG B 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 GLU A 176 CD OE1 OE2 REMARK 470 GLU B 48 CD OE1 OE2 REMARK 470 LYS B 49 CD CE NZ REMARK 470 GLN B 172 CG CD OE1 NE2 REMARK 470 GLU B 176 CD OE1 OE2 REMARK 470 LYS B 194 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SME A 10 C TYR A 11 N 0.179 REMARK 500 SME B 10 C TYR B 11 N 0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2030 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 1198 REMARK 999 REMARK 999 SEQUENCE REMARK 999 INITIATOR METHIONINE IS CLEAVED FROM THE MATURE WRBA REMARK 999 PROTEIN AND RESIDUE NUMBERING IN THE STRUCTURE FOLLOWS AS REMARK 999 DEFINED IN WOLFOVA ET, AL. WITH THE FIRST RESIDUE AN REMARK 999 ALANINE. DBREF 3ZHO A 1 197 UNP P0A8G6 WRBA_ECOLI 2 198 DBREF 3ZHO B 1 197 UNP P0A8G6 WRBA_ECOLI 2 198 SEQRES 1 A 197 ALA LYS VAL LEU VAL LEU TYR TYR SER SME TYR GLY HIS SEQRES 2 A 197 ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SER SEQRES 3 A 197 LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL PRO SEQRES 4 A 197 GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY GLY SEQRES 5 A 197 LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU LEU SEQRES 6 A 197 ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR ARG SEQRES 7 A 197 PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU ASP SEQRES 8 A 197 GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR GLY SEQRES 9 A 197 LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY GLY SEQRES 10 A 197 GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR LEU SEQRES 11 A 197 ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR ALA SEQRES 12 A 197 ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY GLY SEQRES 13 A 197 THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP GLY SEQRES 14 A 197 SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA ARG SEQRES 15 A 197 TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS LEU SEQRES 16 A 197 ASN GLY SEQRES 1 B 197 ALA LYS VAL LEU VAL LEU TYR TYR SER SME TYR GLY HIS SEQRES 2 B 197 ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SER SEQRES 3 B 197 LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL PRO SEQRES 4 B 197 GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY GLY SEQRES 5 B 197 LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU LEU SEQRES 6 B 197 ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR ARG SEQRES 7 B 197 PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU ASP SEQRES 8 B 197 GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR GLY SEQRES 9 B 197 LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY GLY SEQRES 10 B 197 GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR LEU SEQRES 11 B 197 ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR ALA SEQRES 12 B 197 ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY GLY SEQRES 13 B 197 THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP GLY SEQRES 14 B 197 SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA ARG SEQRES 15 B 197 TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS LEU SEQRES 16 B 197 ASN GLY MODRES 3ZHO SME A 10 MET METHIONINE SULFOXIDE MODRES 3ZHO SME B 10 MET METHIONINE SULFOXIDE HET SME A 10 9 HET SME B 10 9 HET FMN A1198 62 HET FMN B1198 31 HETNAM SME METHIONINE SULFOXIDE HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 SME 2(C5 H11 N O3 S) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *318(H2 O) HELIX 1 1 GLY A 12 LYS A 27 1 16 HELIX 2 2 PRO A 43 ALA A 50 1 8 HELIX 3 3 PRO A 62 TYR A 68 5 7 HELIX 4 4 SER A 83 ASP A 91 1 9 HELIX 5 5 THR A 93 GLY A 100 1 8 HELIX 6 6 GLY A 118 HIS A 133 1 16 HELIX 7 7 ALA A 144 PHE A 148 5 5 HELIX 8 8 SER A 174 GLY A 197 1 24 HELIX 9 9 GLY B 12 LYS B 27 1 16 HELIX 10 10 PRO B 43 ALA B 50 1 8 HELIX 11 11 PRO B 62 TYR B 68 5 7 HELIX 12 12 SER B 83 ASP B 91 1 9 HELIX 13 13 THR B 93 GLY B 100 1 8 HELIX 14 14 GLY B 118 HIS B 133 1 16 HELIX 15 15 SER B 174 GLY B 197 1 24 SHEET 1 AA 5 GLU A 32 ARG A 37 0 SHEET 2 AA 5 LYS A 2 TYR A 7 1 O VAL A 3 N VAL A 34 SHEET 3 AA 5 ALA A 70 PRO A 76 1 O ALA A 70 N LEU A 4 SHEET 4 AA 5 LEU A 106 SER A 112 1 O LEU A 106 N ILE A 71 SHEET 5 AA 5 VAL A 136 ILE A 137 1 O VAL A 136 N ALA A 107 SHEET 1 BA 5 GLU B 32 ARG B 37 0 SHEET 2 BA 5 LYS B 2 TYR B 7 1 O VAL B 3 N VAL B 34 SHEET 3 BA 5 ALA B 70 PRO B 76 1 O ALA B 70 N LEU B 4 SHEET 4 BA 5 LEU B 106 THR B 113 1 O LEU B 106 N ILE B 71 SHEET 5 BA 5 THR B 162 ILE B 164 -1 O THR B 163 N THR B 113 SHEET 1 BB 5 GLU B 32 ARG B 37 0 SHEET 2 BB 5 LYS B 2 TYR B 7 1 O VAL B 3 N VAL B 34 SHEET 3 BB 5 ALA B 70 PRO B 76 1 O ALA B 70 N LEU B 4 SHEET 4 BB 5 LEU B 106 THR B 113 1 O LEU B 106 N ILE B 71 SHEET 5 BB 5 VAL B 136 ILE B 137 1 O VAL B 136 N ALA B 107 SHEET 1 BC 2 THR B 162 ILE B 164 0 SHEET 2 BC 2 LEU B 106 THR B 113 -1 O SER B 111 N THR B 163 LINK C SER A 9 N SME A 10 1555 1555 1.42 LINK C SME A 10 N TYR A 11 1555 1555 1.52 LINK C SER B 9 N SME B 10 1555 1555 1.41 LINK C SME B 10 N TYR B 11 1555 1555 1.48 SITE 1 AC1 22 SER A 9 SME A 10 TYR A 11 GLY A 12 SITE 2 AC1 22 HIS A 13 ILE A 14 PRO A 76 THR A 77 SITE 3 AC1 22 ARG A 78 PHE A 79 GLY A 80 SER A 112 SITE 4 AC1 22 THR A 113 GLY A 114 THR A 115 GLY A 116 SITE 5 AC1 22 GLY A 117 HOH A2088 HOH A2145 HOH A2170 SITE 6 AC1 22 ASP B 91 HIS B 132 SITE 1 AC2 24 ASP A 91 HIS A 132 SER B 9 SME B 10 SITE 2 AC2 24 TYR B 11 GLY B 12 HIS B 13 ILE B 14 SITE 3 AC2 24 PRO B 76 THR B 77 ARG B 78 PHE B 79 SITE 4 AC2 24 GLY B 80 SER B 112 THR B 113 GLY B 114 SITE 5 AC2 24 THR B 115 GLY B 116 GLY B 117 HOH B2094 SITE 6 AC2 24 HOH B2116 HOH B2146 HOH B2147 HOH B2148 CRYST1 61.150 61.150 169.590 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005897 0.00000 MTRIX1 1 -0.361200 -0.630700 -0.686800 1.48000 1 MTRIX2 1 -0.641100 -0.366900 0.674100 1.74400 1 MTRIX3 1 -0.677100 0.683800 -0.271800 0.04250 1