HEADER ISOMERASE 30-DEC-12 3ZI1 TITLE CRYSTAL STRUCTURE OF HUMAN GLYOXALASE DOMAIN-CONTAINING PROTEIN 4 TITLE 2 (GLOD4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-272; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.OBERHOLZER,W.KIYANI,L.SHRESTHA,M.VOLLMAR,T.KROJER,D.S.FROESE, AUTHOR 2 E.WILLIAMS,F.VON DELFT,N.BURGESS-BROWN,C.H.ARROWSMITH,A.EDWARDS, AUTHOR 3 C.BOUNTRA,W.W.YUE REVDAT 3 20-DEC-23 3ZI1 1 REMARK REVDAT 2 24-JAN-18 3ZI1 1 JRNL REVDAT 1 16-JAN-13 3ZI1 0 JRNL AUTH A.OBERHOLZE,W.KIYANI,L.SHRESTHA,M.VOLLMAR,T.KROJER, JRNL AUTH 2 D.S.FROESE,E.WILLIAMS,F.VON DELFT,N.BURGESS-BROWN, JRNL AUTH 3 C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,W.W.YUE JRNL TITL CRYSTAL STRUCTURE OF HUMAN GLYOXALASE DOMAIN- CONTAINING JRNL TITL 2 PROTEIN 4 (GLOD4) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 119.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 26497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2252 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3048 ; 1.463 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 5.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;31.840 ;24.587 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;12.278 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1731 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3087 5.2180 16.7997 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0263 REMARK 3 T33: 0.0172 T12: 0.0016 REMARK 3 T13: 0.0087 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.1000 L22: 0.4248 REMARK 3 L33: 0.4762 L12: 0.2822 REMARK 3 L13: -0.4640 L23: 0.0536 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: -0.0760 S13: 0.0528 REMARK 3 S21: 0.0100 S22: 0.0168 S23: -0.0333 REMARK 3 S31: 0.0601 S32: 0.0118 S33: -0.0328 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3883 8.8222 28.0464 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1631 REMARK 3 T33: 0.1462 T12: -0.0458 REMARK 3 T13: -0.0373 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 2.9119 L22: 2.3108 REMARK 3 L33: 3.6868 L12: -2.5443 REMARK 3 L13: -2.8123 L23: 2.2760 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: -0.2340 S13: 0.2760 REMARK 3 S21: 0.0734 S22: 0.1156 S23: -0.3354 REMARK 3 S31: -0.2063 S32: 0.3192 S33: -0.0944 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8584 3.2720 10.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.0124 REMARK 3 T33: 0.0099 T12: -0.0027 REMARK 3 T13: 0.0063 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6249 L22: 0.6557 REMARK 3 L33: 0.9601 L12: 0.1447 REMARK 3 L13: 0.0333 L23: 0.0857 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0146 S13: -0.0033 REMARK 3 S21: 0.0062 S22: -0.0019 S23: 0.0012 REMARK 3 S31: 0.0571 S32: -0.0961 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 45.8507 12.5432 2.7751 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.0205 REMARK 3 T33: 0.0702 T12: 0.0088 REMARK 3 T13: 0.0251 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.8839 L22: 0.9579 REMARK 3 L33: 0.1331 L12: 0.4288 REMARK 3 L13: 0.0183 L23: -0.2851 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.1233 S13: -0.0098 REMARK 3 S21: -0.0820 S22: 0.0169 S23: -0.0833 REMARK 3 S31: 0.0120 S32: 0.0175 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9814 17.3978 -2.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0565 REMARK 3 T33: 0.0638 T12: 0.0151 REMARK 3 T13: 0.0160 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 3.5481 L22: 1.0065 REMARK 3 L33: 0.4678 L12: 0.2967 REMARK 3 L13: 0.2729 L23: 0.6794 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.3302 S13: 0.0592 REMARK 3 S21: -0.1570 S22: -0.0447 S23: -0.0242 REMARK 3 S31: -0.1074 S32: -0.0183 S33: 0.0075 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1160 15.2720 8.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0134 REMARK 3 T33: 0.0453 T12: 0.0084 REMARK 3 T13: 0.0126 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.5417 L22: 0.5158 REMARK 3 L33: 0.3423 L12: 0.0823 REMARK 3 L13: -0.4304 L23: -0.0697 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.0442 S13: 0.0016 REMARK 3 S21: 0.0081 S22: 0.0038 S23: 0.0037 REMARK 3 S31: -0.0467 S32: 0.0302 S33: -0.0415 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 61.1945 23.9056 15.4794 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0784 REMARK 3 T33: 0.1316 T12: -0.0159 REMARK 3 T13: 0.0082 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 4.1928 L22: 15.1257 REMARK 3 L33: 2.0668 L12: -6.2024 REMARK 3 L13: 1.2962 L23: -5.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: -0.3044 S13: 0.4899 REMARK 3 S21: 0.0865 S22: -0.0847 S23: -0.5139 REMARK 3 S31: -0.1075 S32: 0.1611 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7107 16.4278 19.7983 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: 0.0562 REMARK 3 T33: 0.0375 T12: -0.0232 REMARK 3 T13: -0.0059 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.8592 L22: 1.4755 REMARK 3 L33: 0.4778 L12: -0.0769 REMARK 3 L13: -0.2977 L23: -0.4738 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: -0.1881 S13: 0.1227 REMARK 3 S21: 0.1110 S22: -0.0801 S23: -0.0592 REMARK 3 S31: -0.0884 S32: 0.1227 S33: -0.0286 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 265 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 46.1509 -6.0742 24.0008 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.1148 REMARK 3 T33: 0.1872 T12: 0.0471 REMARK 3 T13: 0.0162 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 9.4294 L22: 4.7649 REMARK 3 L33: 2.2777 L12: 3.6848 REMARK 3 L13: -2.9130 L23: -0.1566 REMARK 3 S TENSOR REMARK 3 S11: -0.4102 S12: -0.5230 S13: -1.2039 REMARK 3 S21: 0.1554 S22: -0.0165 S23: -0.5644 REMARK 3 S31: 0.3499 S32: 0.0790 S33: 0.4267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES WITH TLS ADDED REMARK 4 REMARK 4 3ZI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 68.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FA8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M HEPES PH REMARK 280 7.5, 25%(W/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.64550 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.05150 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.64550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.05150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 GLU A 39 REMARK 465 GLY A 40 REMARK 465 CYS A 41 REMARK 465 LYS A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 CYS A 45 REMARK 465 ASN A 46 REMARK 465 GLY A 47 REMARK 465 LYS A 279 REMARK 465 GLY A 280 REMARK 465 GLY A 281 REMARK 465 TYR A 282 REMARK 465 GLY A 283 REMARK 465 SER A 284 REMARK 465 GLU A 285 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 LEU A 288 REMARK 465 ARG A 289 REMARK 465 ARG A 290 REMARK 465 GLN A 291 REMARK 465 ALA A 292 REMARK 465 CYS A 293 REMARK 465 GLY A 294 REMARK 465 ARG A 295 REMARK 465 THR A 296 REMARK 465 ARG A 297 REMARK 465 ALA A 298 REMARK 465 PRO A 299 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 LEU A 304 REMARK 465 ARG A 305 REMARK 465 SER A 306 REMARK 465 GLY A 307 REMARK 465 CYS A 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -4 CG CD1 CD2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 LYS A 102 CE NZ REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 ASN A 273 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2291 O HOH A 2292 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 134 -21.96 81.77 REMARK 500 ALA A 196 -129.12 47.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2072 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A2144 DISTANCE = 6.33 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1282 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N TERMINAL MHHHHHHSSGVDLGTENLYFQS DUE TO UNCLEAVED REMARK 999 PURIFICATION TAG AND C TERMINAL REMARK 999 NCWIDSKGGYGSEFELRRQACGRTRAPPPPPLRSGC DUE TO DNA FRAME REMARK 999 SHIFT AS A RESULT OF CLONING DBREF 3ZI1 A 1 272 UNP Q9HC38 GLOD4_HUMAN 1 272 SEQADV 3ZI1 MET A -21 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 HIS A -20 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 HIS A -19 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 HIS A -18 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 HIS A -17 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 HIS A -16 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 HIS A -15 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 SER A -14 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 SER A -13 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 GLY A -12 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 VAL A -11 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 ASP A -10 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 LEU A -9 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 GLY A -8 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 THR A -7 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 GLU A -6 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 ASN A -5 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 LEU A -4 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 TYR A -3 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 PHE A -2 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 GLN A -1 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 SER A 0 UNP Q9HC38 EXPRESSION TAG SEQADV 3ZI1 ASN A 273 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 CYS A 274 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 TRP A 275 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ILE A 276 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ASP A 277 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 SER A 278 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 LYS A 279 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLY A 280 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLY A 281 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 TYR A 282 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLY A 283 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 SER A 284 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLU A 285 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 PHE A 286 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLU A 287 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 LEU A 288 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ARG A 289 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ARG A 290 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLN A 291 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ALA A 292 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 CYS A 293 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLY A 294 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ARG A 295 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 THR A 296 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ARG A 297 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ALA A 298 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 PRO A 299 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 PRO A 300 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 PRO A 301 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 PRO A 302 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 PRO A 303 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 LEU A 304 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ARG A 305 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 SER A 306 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 GLY A 307 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 CYS A 308 UNP Q9HC38 CLONING ARTIFACT SEQADV 3ZI1 ASN A 166 UNP Q9HC38 LYS 166 ENGINEERED MUTATION SEQRES 1 A 330 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 330 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA ALA ARG SEQRES 3 A 330 ARG ALA LEU HIS PHE VAL PHE LYS VAL GLY ASN ARG PHE SEQRES 4 A 330 GLN THR ALA ARG PHE TYR ARG ASP VAL LEU GLY MET LYS SEQRES 5 A 330 VAL LEU ARG HIS GLU GLU PHE GLU GLU GLY CYS LYS ALA SEQRES 6 A 330 ALA CYS ASN GLY PRO TYR ASP GLY LYS TRP SER LYS THR SEQRES 7 A 330 MET VAL GLY PHE GLY PRO GLU ASP ASP HIS PHE VAL ALA SEQRES 8 A 330 GLU LEU THR TYR ASN TYR GLY VAL GLY ASP TYR LYS LEU SEQRES 9 A 330 GLY ASN ASP PHE MET GLY ILE THR LEU ALA SER SER GLN SEQRES 10 A 330 ALA VAL SER ASN ALA ARG LYS LEU GLU TRP PRO LEU THR SEQRES 11 A 330 GLU VAL ALA GLU GLY VAL PHE GLU THR GLU ALA PRO GLY SEQRES 12 A 330 GLY TYR LYS PHE TYR LEU GLN ASN ARG SER LEU PRO GLN SEQRES 13 A 330 SER ASP PRO VAL LEU LYS VAL THR LEU ALA VAL SER ASP SEQRES 14 A 330 LEU GLN LYS SER LEU ASN TYR TRP CYS ASN LEU LEU GLY SEQRES 15 A 330 MET LYS ILE TYR GLU ASN ASP GLU GLU LYS GLN ARG ALA SEQRES 16 A 330 LEU LEU GLY TYR ALA ASP ASN GLN CYS LYS LEU GLU LEU SEQRES 17 A 330 GLN GLY VAL LYS GLY GLY VAL ASP HIS ALA ALA ALA PHE SEQRES 18 A 330 GLY ARG ILE ALA PHE SER CYS PRO GLN LYS GLU LEU PRO SEQRES 19 A 330 ASP LEU GLU ASP LEU MET LYS ARG GLU ASN GLN LYS ILE SEQRES 20 A 330 LEU THR PRO LEU VAL SER LEU ASP THR PRO GLY LYS ALA SEQRES 21 A 330 THR VAL GLN VAL VAL ILE LEU ALA ASP PRO ASP GLY HIS SEQRES 22 A 330 GLU ILE CYS PHE VAL GLY ASP GLU ALA PHE ARG GLU LEU SEQRES 23 A 330 SER LYS MET ASP PRO GLU GLY SER ASN CYS TRP ILE ASP SEQRES 24 A 330 SER LYS GLY GLY TYR GLY SER GLU PHE GLU LEU ARG ARG SEQRES 25 A 330 GLN ALA CYS GLY ARG THR ARG ALA PRO PRO PRO PRO PRO SEQRES 26 A 330 LEU ARG SER GLY CYS HET EDO A1279 4 HET EDO A1280 4 HET EDO A1281 4 HET EDO A1282 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 HOH *367(H2 O) HELIX 1 1 TYR A -3 MET A 1 5 5 HELIX 2 2 ASN A 15 VAL A 26 1 12 HELIX 3 3 SER A 93 GLU A 104 1 12 HELIX 4 4 ASP A 147 LEU A 158 1 12 HELIX 5 5 PRO A 207 LYS A 209 5 3 HELIX 6 6 GLU A 210 GLU A 221 1 12 HELIX 7 7 ASP A 258 SER A 265 1 8 HELIX 8 8 GLU A 270 TRP A 275 5 6 SHEET 1 AA 8 LYS A 30 PHE A 37 0 SHEET 2 AA 8 TRP A 53 GLY A 59 -1 O TRP A 53 N PHE A 37 SHEET 3 AA 8 VAL A 68 ASN A 74 -1 O ALA A 69 N VAL A 58 SHEET 4 AA 8 ARG A 5 LYS A 12 1 O LEU A 7 N VAL A 68 SHEET 5 AA 8 ARG A 201 CYS A 206 -1 O ARG A 201 N VAL A 10 SHEET 6 AA 8 GLU A 252 GLY A 257 1 O GLU A 252 N ILE A 202 SHEET 7 AA 8 VAL A 240 ALA A 246 -1 O GLN A 241 N GLY A 257 SHEET 8 AA 8 LYS A 224 LEU A 232 -1 O LYS A 224 N ALA A 246 SHEET 1 AB 8 THR A 108 ALA A 111 0 SHEET 2 AB 8 VAL A 114 GLU A 118 -1 O VAL A 114 N VAL A 110 SHEET 3 AB 8 LYS A 124 GLN A 128 -1 O PHE A 125 N THR A 117 SHEET 4 AB 8 PHE A 86 ALA A 92 1 O ILE A 89 N TYR A 126 SHEET 5 AB 8 VAL A 138 VAL A 145 -1 N LEU A 139 O THR A 90 SHEET 6 AB 8 LYS A 183 GLY A 188 1 O LYS A 183 N VAL A 141 SHEET 7 AB 8 ARG A 172 GLY A 176 -1 O ALA A 173 N LEU A 186 SHEET 8 AB 8 LYS A 162 ASP A 167 -1 O LYS A 162 N GLY A 176 SITE 1 AC1 4 GLY A 78 ARG A 101 ASN A 129 HOH A2047 SITE 1 AC2 4 GLY A 113 ASN A 129 ARG A 130 HOH A2364 SITE 1 AC3 6 TRP A 53 LYS A 55 ASP A 233 THR A 234 SITE 2 AC3 6 HOH A2336 HOH A2365 SITE 1 AC4 9 ARG A 5 ALA A 6 ASP A 65 HIS A 66 SITE 2 AC4 9 PHE A 67 GLN A 181 CYS A 182 HOH A2030 SITE 3 AC4 9 HOH A2367 CRYST1 119.291 42.918 68.103 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014684 0.00000