data_3ZKK # _entry.id 3ZKK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZKK PDBE EBI-55504 WWPDB D_1290055504 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZKL unspecified ;STRUCTURE OF THE XYLO-OLIGOSACCHARIDE SPECIFIC SOLUTE BINDING PROTEIN FROM BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS BL-04 IN COMPLEX WITH XYLOTRIOSE ; PDB 4C1T unspecified ;STRUCTURE OF THE XYLO-OLIGOSACCHARIDE SPECIFIC SOLUTE BINDING PROTEIN FROM BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS BL-04 IN COMPLEX WITH ARABINOXYLOTRIOSE ; PDB 4C1U unspecified ;STRUCTURE OF THE XYLO-OLIGOSACCHARIDE SPECIFIC SOLUTE BINDING PROTEIN FROM BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS BL-04 IN COMPLEX WITH ARABINOXYLOBIOSE ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZKK _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-01-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ejby, M.' 1 'Vujicic-Zagar, A.' 2 'Fredslund, F.' 3 'Svensson, B.' 4 'Slotboom, D.J.' 5 'Abou Hachem, M.' 6 # _citation.id primary _citation.title 'Structural Basis for Arabinoxylo-Oligosaccharide Capture by the Probiotic Bifidobacterium Animalis Subsp. Lactis Bl-04' _citation.journal_abbrev Mol.Microbiol. _citation.journal_volume 90 _citation.page_first 1100 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM MOMIEE _citation.country UK _citation.journal_id_ISSN 0950-382X _citation.journal_id_CSD 2007 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24279727 _citation.pdbx_database_id_DOI 10.1111/MMI.12419 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ejby, M.' 1 ? primary 'Fredslund, F.' 2 ? primary 'Vujicic-Zagar, A.' 3 ? primary 'Svensson, B.' 4 ? primary 'Slotboom, D.J.' 5 ? primary 'Abou Hachem, M.' 6 ? # _cell.entry_id 3ZKK _cell.length_a 68.045 _cell.length_b 124.049 _cell.length_c 61.334 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZKK _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'XOS BINDING PROTEIN' 44332.543 1 ? ? 'RESIDUES 19-425' ? 2 branched man 'beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose' 546.474 1 ? ? ? ? 3 non-polymer syn 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL 326.383 1 ? ? ? ? 4 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMASMSACGGSESSSDDKTITFWHNASAGEGRQYWENLAKSFEEANPGTKVEIQAIQNEDFAGKLQTAMQDPASGPDV FMSLGGAKTKEMIDAGQVMDLTDKISDTVKTDMKTTLSAATFDGKVYGVPVSVEPGGMWYSKDLFKKAGVSDVPATYEEL LADAKKLKDSGTDAIALGAKDAWPAAHWYYWLVLRECSPEVYDKSVQDHDFSNACWVNAGKKLQELKDLKVFNDGFLTTT AQQGANSSAGLLANHKAAMELMGAWEPGVLKDLTPDQKPMADLGFFAFPEVAGGEGEPGALMGGVTYFCVNPKASQTSID FVNYMGEKKNQEDYAKAFSTIPASEPARAVVTDESLKQVIEYLDKAPSMQLWMDTALGTNIGNALNAAVVNMLSGQGSPE DIVKAMQDAAQKG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASMSACGGSESSSDDKTITFWHNASAGEGRQYWENLAKSFEEANPGTKVEIQAIQNEDFAGKLQTAMQDPASGPDV FMSLGGAKTKEMIDAGQVMDLTDKISDTVKTDMKTTLSAATFDGKVYGVPVSVEPGGMWYSKDLFKKAGVSDVPATYEEL LADAKKLKDSGTDAIALGAKDAWPAAHWYYWLVLRECSPEVYDKSVQDHDFSNACWVNAGKKLQELKDLKVFNDGFLTTT AQQGANSSAGLLANHKAAMELMGAWEPGVLKDLTPDQKPMADLGFFAFPEVAGGEGEPGALMGGVTYFCVNPKASQTSID FVNYMGEKKNQEDYAKAFSTIPASEPARAVVTDESLKQVIEYLDKAPSMQLWMDTALGTNIGNALNAAVVNMLSGQGSPE DIVKAMQDAAQKG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 MET n 1 8 SER n 1 9 ALA n 1 10 CYS n 1 11 GLY n 1 12 GLY n 1 13 SER n 1 14 GLU n 1 15 SER n 1 16 SER n 1 17 SER n 1 18 ASP n 1 19 ASP n 1 20 LYS n 1 21 THR n 1 22 ILE n 1 23 THR n 1 24 PHE n 1 25 TRP n 1 26 HIS n 1 27 ASN n 1 28 ALA n 1 29 SER n 1 30 ALA n 1 31 GLY n 1 32 GLU n 1 33 GLY n 1 34 ARG n 1 35 GLN n 1 36 TYR n 1 37 TRP n 1 38 GLU n 1 39 ASN n 1 40 LEU n 1 41 ALA n 1 42 LYS n 1 43 SER n 1 44 PHE n 1 45 GLU n 1 46 GLU n 1 47 ALA n 1 48 ASN n 1 49 PRO n 1 50 GLY n 1 51 THR n 1 52 LYS n 1 53 VAL n 1 54 GLU n 1 55 ILE n 1 56 GLN n 1 57 ALA n 1 58 ILE n 1 59 GLN n 1 60 ASN n 1 61 GLU n 1 62 ASP n 1 63 PHE n 1 64 ALA n 1 65 GLY n 1 66 LYS n 1 67 LEU n 1 68 GLN n 1 69 THR n 1 70 ALA n 1 71 MET n 1 72 GLN n 1 73 ASP n 1 74 PRO n 1 75 ALA n 1 76 SER n 1 77 GLY n 1 78 PRO n 1 79 ASP n 1 80 VAL n 1 81 PHE n 1 82 MET n 1 83 SER n 1 84 LEU n 1 85 GLY n 1 86 GLY n 1 87 ALA n 1 88 LYS n 1 89 THR n 1 90 LYS n 1 91 GLU n 1 92 MET n 1 93 ILE n 1 94 ASP n 1 95 ALA n 1 96 GLY n 1 97 GLN n 1 98 VAL n 1 99 MET n 1 100 ASP n 1 101 LEU n 1 102 THR n 1 103 ASP n 1 104 LYS n 1 105 ILE n 1 106 SER n 1 107 ASP n 1 108 THR n 1 109 VAL n 1 110 LYS n 1 111 THR n 1 112 ASP n 1 113 MET n 1 114 LYS n 1 115 THR n 1 116 THR n 1 117 LEU n 1 118 SER n 1 119 ALA n 1 120 ALA n 1 121 THR n 1 122 PHE n 1 123 ASP n 1 124 GLY n 1 125 LYS n 1 126 VAL n 1 127 TYR n 1 128 GLY n 1 129 VAL n 1 130 PRO n 1 131 VAL n 1 132 SER n 1 133 VAL n 1 134 GLU n 1 135 PRO n 1 136 GLY n 1 137 GLY n 1 138 MET n 1 139 TRP n 1 140 TYR n 1 141 SER n 1 142 LYS n 1 143 ASP n 1 144 LEU n 1 145 PHE n 1 146 LYS n 1 147 LYS n 1 148 ALA n 1 149 GLY n 1 150 VAL n 1 151 SER n 1 152 ASP n 1 153 VAL n 1 154 PRO n 1 155 ALA n 1 156 THR n 1 157 TYR n 1 158 GLU n 1 159 GLU n 1 160 LEU n 1 161 LEU n 1 162 ALA n 1 163 ASP n 1 164 ALA n 1 165 LYS n 1 166 LYS n 1 167 LEU n 1 168 LYS n 1 169 ASP n 1 170 SER n 1 171 GLY n 1 172 THR n 1 173 ASP n 1 174 ALA n 1 175 ILE n 1 176 ALA n 1 177 LEU n 1 178 GLY n 1 179 ALA n 1 180 LYS n 1 181 ASP n 1 182 ALA n 1 183 TRP n 1 184 PRO n 1 185 ALA n 1 186 ALA n 1 187 HIS n 1 188 TRP n 1 189 TYR n 1 190 TYR n 1 191 TRP n 1 192 LEU n 1 193 VAL n 1 194 LEU n 1 195 ARG n 1 196 GLU n 1 197 CYS n 1 198 SER n 1 199 PRO n 1 200 GLU n 1 201 VAL n 1 202 TYR n 1 203 ASP n 1 204 LYS n 1 205 SER n 1 206 VAL n 1 207 GLN n 1 208 ASP n 1 209 HIS n 1 210 ASP n 1 211 PHE n 1 212 SER n 1 213 ASN n 1 214 ALA n 1 215 CYS n 1 216 TRP n 1 217 VAL n 1 218 ASN n 1 219 ALA n 1 220 GLY n 1 221 LYS n 1 222 LYS n 1 223 LEU n 1 224 GLN n 1 225 GLU n 1 226 LEU n 1 227 LYS n 1 228 ASP n 1 229 LEU n 1 230 LYS n 1 231 VAL n 1 232 PHE n 1 233 ASN n 1 234 ASP n 1 235 GLY n 1 236 PHE n 1 237 LEU n 1 238 THR n 1 239 THR n 1 240 THR n 1 241 ALA n 1 242 GLN n 1 243 GLN n 1 244 GLY n 1 245 ALA n 1 246 ASN n 1 247 SER n 1 248 SER n 1 249 ALA n 1 250 GLY n 1 251 LEU n 1 252 LEU n 1 253 ALA n 1 254 ASN n 1 255 HIS n 1 256 LYS n 1 257 ALA n 1 258 ALA n 1 259 MET n 1 260 GLU n 1 261 LEU n 1 262 MET n 1 263 GLY n 1 264 ALA n 1 265 TRP n 1 266 GLU n 1 267 PRO n 1 268 GLY n 1 269 VAL n 1 270 LEU n 1 271 LYS n 1 272 ASP n 1 273 LEU n 1 274 THR n 1 275 PRO n 1 276 ASP n 1 277 GLN n 1 278 LYS n 1 279 PRO n 1 280 MET n 1 281 ALA n 1 282 ASP n 1 283 LEU n 1 284 GLY n 1 285 PHE n 1 286 PHE n 1 287 ALA n 1 288 PHE n 1 289 PRO n 1 290 GLU n 1 291 VAL n 1 292 ALA n 1 293 GLY n 1 294 GLY n 1 295 GLU n 1 296 GLY n 1 297 GLU n 1 298 PRO n 1 299 GLY n 1 300 ALA n 1 301 LEU n 1 302 MET n 1 303 GLY n 1 304 GLY n 1 305 VAL n 1 306 THR n 1 307 TYR n 1 308 PHE n 1 309 CYS n 1 310 VAL n 1 311 ASN n 1 312 PRO n 1 313 LYS n 1 314 ALA n 1 315 SER n 1 316 GLN n 1 317 THR n 1 318 SER n 1 319 ILE n 1 320 ASP n 1 321 PHE n 1 322 VAL n 1 323 ASN n 1 324 TYR n 1 325 MET n 1 326 GLY n 1 327 GLU n 1 328 LYS n 1 329 LYS n 1 330 ASN n 1 331 GLN n 1 332 GLU n 1 333 ASP n 1 334 TYR n 1 335 ALA n 1 336 LYS n 1 337 ALA n 1 338 PHE n 1 339 SER n 1 340 THR n 1 341 ILE n 1 342 PRO n 1 343 ALA n 1 344 SER n 1 345 GLU n 1 346 PRO n 1 347 ALA n 1 348 ARG n 1 349 ALA n 1 350 VAL n 1 351 VAL n 1 352 THR n 1 353 ASP n 1 354 GLU n 1 355 SER n 1 356 LEU n 1 357 LYS n 1 358 GLN n 1 359 VAL n 1 360 ILE n 1 361 GLU n 1 362 TYR n 1 363 LEU n 1 364 ASP n 1 365 LYS n 1 366 ALA n 1 367 PRO n 1 368 SER n 1 369 MET n 1 370 GLN n 1 371 LEU n 1 372 TRP n 1 373 MET n 1 374 ASP n 1 375 THR n 1 376 ALA n 1 377 LEU n 1 378 GLY n 1 379 THR n 1 380 ASN n 1 381 ILE n 1 382 GLY n 1 383 ASN n 1 384 ALA n 1 385 LEU n 1 386 ASN n 1 387 ALA n 1 388 ALA n 1 389 VAL n 1 390 VAL n 1 391 ASN n 1 392 MET n 1 393 LEU n 1 394 SER n 1 395 GLY n 1 396 GLN n 1 397 GLY n 1 398 SER n 1 399 PRO n 1 400 GLU n 1 401 ASP n 1 402 ILE n 1 403 VAL n 1 404 LYS n 1 405 ALA n 1 406 MET n 1 407 GLN n 1 408 ASP n 1 409 ALA n 1 410 ALA n 1 411 GLN n 1 412 LYS n 1 413 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS BL-04' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 580050 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C6A6Z1_BIFLB _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession C6A6Z1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZKK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 413 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C6A6Z1 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 425 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 19 _struct_ref_seq.pdbx_auth_seq_align_end 425 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZKK GLY A 1 ? UNP C6A6Z1 ? ? 'expression tag' 13 1 1 3ZKK SER A 2 ? UNP C6A6Z1 ? ? 'expression tag' 14 2 1 3ZKK HIS A 3 ? UNP C6A6Z1 ? ? 'expression tag' 15 3 1 3ZKK MET A 4 ? UNP C6A6Z1 ? ? 'expression tag' 16 4 1 3ZKK ALA A 5 ? UNP C6A6Z1 ? ? 'expression tag' 17 5 1 3ZKK SER A 6 ? UNP C6A6Z1 ? ? 'expression tag' 18 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P33 non-polymer . 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL 'HEPTAETHYLENE GLYCOL; PEG330' 'C14 H30 O8' 326.383 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XYP 'D-saccharide, beta linking' . beta-D-xylopyranose ? 'C5 H10 O5' 150.130 # _exptl.entry_id 3ZKK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M TRIS, 47% PEG 400, 5% PEG 1000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-07-16 _diffrn_detector.details 'DYNAMICALLY BENDABLE MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'LN2 COOLED FIXED-EXIT SI(111) MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97935 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 0.97935 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZKK _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.80 _reflns.d_resolution_high 2.20 _reflns.number_obs 27024 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.30 _reflns_shell.percent_possible_all 97.5 _reflns_shell.Rmerge_I_obs 1.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.12 _reflns_shell.pdbx_redundancy 6.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZKK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 26927 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.839 _refine.ls_d_res_high 2.198 _refine.ls_percent_reflns_obs 99.16 _refine.ls_R_factor_obs 0.2034 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2012 _refine.ls_R_factor_R_free 0.2441 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1354 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'MOLECULAR REPLACEMENT MODEL FROM PARTIAL MODEL BUILT FROM LOW-RESOLUTION SEMET DATASET.' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 35.01 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3002 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 3173 _refine_hist.d_res_high 2.198 _refine_hist.d_res_low 45.839 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 3129 'X-RAY DIFFRACTION' ? f_angle_d 1.096 ? ? 4237 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.058 ? ? 1140 'X-RAY DIFFRACTION' ? f_chiral_restr 0.076 ? ? 467 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 546 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.1976 2.2762 2444 0.4269 97.00 0.4390 . . 132 . . 'X-RAY DIFFRACTION' . 2.2762 2.3673 2502 0.3524 99.00 0.4389 . . 133 . . 'X-RAY DIFFRACTION' . 2.3673 2.4750 2506 0.3127 99.00 0.3714 . . 131 . . 'X-RAY DIFFRACTION' . 2.4750 2.6055 2516 0.2594 99.00 0.3283 . . 134 . . 'X-RAY DIFFRACTION' . 2.6055 2.7687 2545 0.2409 99.00 0.3331 . . 135 . . 'X-RAY DIFFRACTION' . 2.7687 2.9825 2532 0.2398 100.00 0.3025 . . 134 . . 'X-RAY DIFFRACTION' . 2.9825 3.2825 2579 0.2385 100.00 0.3028 . . 136 . . 'X-RAY DIFFRACTION' . 3.2825 3.7573 2587 0.2015 100.00 0.2825 . . 136 . . 'X-RAY DIFFRACTION' . 3.7573 4.7331 2619 0.1586 100.00 0.1853 . . 138 . . 'X-RAY DIFFRACTION' . 4.7331 45.8489 2743 0.1669 100.00 0.1858 . . 145 . . # _struct.entry_id 3ZKK _struct.title ;Structure of the xylo-oligosaccharide specific solute binding protein from Bifidobacterium animalis subsp. lactis Bl-04 in complex with xylotetraose ; _struct.pdbx_descriptor 'XOS BINDING PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZKK _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'TRANSPORT PROTEIN, PROBIOTIC, PREBIOTIC, ABC TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 30 ? ASN A 48 ? ALA A 42 ASN A 60 1 ? 19 HELX_P HELX_P2 2 GLN A 59 ? MET A 71 ? GLN A 71 MET A 83 1 ? 13 HELX_P HELX_P3 3 GLN A 72 ? GLY A 77 ? GLN A 84 GLY A 89 5 ? 6 HELX_P HELX_P4 4 GLY A 85 ? ASP A 94 ? GLY A 97 ASP A 106 1 ? 10 HELX_P HELX_P5 5 SER A 106 ? MET A 113 ? SER A 118 MET A 125 1 ? 8 HELX_P HELX_P6 6 THR A 116 ? ALA A 119 ? THR A 128 ALA A 131 5 ? 4 HELX_P HELX_P7 7 LYS A 142 ? GLY A 149 ? LYS A 154 GLY A 161 1 ? 8 HELX_P HELX_P8 8 THR A 156 ? SER A 170 ? THR A 168 SER A 182 1 ? 15 HELX_P HELX_P9 9 GLY A 178 ? ASP A 181 ? GLY A 190 ASP A 193 5 ? 4 HELX_P HELX_P10 10 ALA A 182 ? CYS A 197 ? ALA A 194 CYS A 209 1 ? 16 HELX_P HELX_P11 11 SER A 198 ? HIS A 209 ? SER A 210 HIS A 221 1 ? 12 HELX_P HELX_P12 12 ALA A 214 ? LEU A 229 ? ALA A 226 LEU A 241 1 ? 16 HELX_P HELX_P13 13 GLY A 235 ? THR A 239 ? GLY A 247 THR A 251 5 ? 5 HELX_P HELX_P14 14 SER A 247 ? ASN A 254 ? SER A 259 ASN A 266 1 ? 8 HELX_P HELX_P15 15 TRP A 265 ? ASP A 272 ? TRP A 277 ASP A 284 1 ? 8 HELX_P HELX_P16 16 SER A 315 ? GLU A 327 ? SER A 327 GLU A 339 1 ? 13 HELX_P HELX_P17 17 GLU A 327 ? SER A 339 ? GLU A 339 SER A 351 1 ? 13 HELX_P HELX_P18 18 GLU A 345 ? VAL A 351 ? GLU A 357 VAL A 363 5 ? 7 HELX_P HELX_P19 19 ASP A 353 ? ASP A 364 ? ASP A 365 ASP A 376 1 ? 12 HELX_P HELX_P20 20 TRP A 372 ? GLY A 378 ? TRP A 384 GLY A 390 1 ? 7 HELX_P HELX_P21 21 GLY A 378 ? SER A 394 ? GLY A 390 SER A 406 1 ? 17 HELX_P HELX_P22 22 SER A 398 ? GLN A 411 ? SER A 410 GLN A 423 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 197 SG ? ? ? 1_555 A CYS 215 SG ? ? A CYS 209 A CYS 227 1_555 ? ? ? ? ? ? ? 2.043 ? ? covale1 covale none ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 1 B XYP 2 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale2 covale none ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 2 B XYP 3 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale3 covale none ? B XYP . O4 ? ? ? 1_555 B XYP . C1 ? ? B XYP 3 B XYP 4 1_555 ? ? ? ? ? ? ? 1.438 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 6 ? AC ? 4 ? AD ? 7 ? AE ? 5 ? AF ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel AC 1 2 ? parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AD 1 2 ? parallel AD 2 3 ? parallel AD 3 4 ? anti-parallel AD 4 5 ? anti-parallel AD 5 6 ? anti-parallel AD 6 7 ? parallel AE 1 2 ? parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AE 4 5 ? parallel AF 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 52 ? ALA A 57 ? LYS A 64 ALA A 69 AA 2 THR A 21 ? HIS A 26 ? THR A 33 HIS A 38 AA 3 VAL A 80 ? MET A 82 ? VAL A 92 MET A 94 AA 4 LEU A 301 ? VAL A 310 ? LEU A 313 VAL A 322 AA 5 MET A 369 ? LEU A 371 ? MET A 381 LEU A 383 AB 1 LYS A 52 ? ALA A 57 ? LYS A 64 ALA A 69 AB 2 THR A 21 ? HIS A 26 ? THR A 33 HIS A 38 AB 3 VAL A 80 ? MET A 82 ? VAL A 92 MET A 94 AB 4 LEU A 301 ? VAL A 310 ? LEU A 313 VAL A 322 AB 5 VAL A 129 ? SER A 141 ? VAL A 141 SER A 153 AB 6 LEU A 283 ? PHE A 286 ? LEU A 295 PHE A 298 AC 1 ASP A 173 ? ILE A 175 ? ASP A 185 ILE A 187 AC 2 ALA A 257 ? GLY A 263 ? ALA A 269 GLY A 275 AC 3 VAL A 129 ? SER A 141 ? VAL A 141 SER A 153 AC 4 LEU A 283 ? PHE A 286 ? LEU A 295 PHE A 298 AD 1 LYS A 52 ? ALA A 57 ? LYS A 64 ALA A 69 AD 2 THR A 21 ? HIS A 26 ? THR A 33 HIS A 38 AD 3 VAL A 80 ? MET A 82 ? VAL A 92 MET A 94 AD 4 LEU A 301 ? VAL A 310 ? LEU A 313 VAL A 322 AD 5 VAL A 129 ? SER A 141 ? VAL A 141 SER A 153 AD 6 ALA A 257 ? GLY A 263 ? ALA A 269 GLY A 275 AD 7 ASP A 173 ? ILE A 175 ? ASP A 185 ILE A 187 AE 1 ASP A 173 ? ILE A 175 ? ASP A 185 ILE A 187 AE 2 ALA A 257 ? GLY A 263 ? ALA A 269 GLY A 275 AE 3 VAL A 129 ? SER A 141 ? VAL A 141 SER A 153 AE 4 LEU A 301 ? VAL A 310 ? LEU A 313 VAL A 322 AE 5 MET A 369 ? LEU A 371 ? MET A 381 LEU A 383 AF 1 THR A 121 ? PHE A 122 ? THR A 133 PHE A 134 AF 2 LYS A 125 ? VAL A 126 ? LYS A 137 VAL A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLU A 54 ? N GLU A 66 O ILE A 22 ? O ILE A 34 AA 2 3 N TRP A 25 ? N TRP A 37 O VAL A 80 ? O VAL A 92 AA 3 4 N PHE A 81 ? N PHE A 93 O CYS A 309 ? O CYS A 321 AA 4 5 N GLY A 303 ? N GLY A 315 O GLN A 370 ? O GLN A 382 AB 1 2 N GLU A 54 ? N GLU A 66 O ILE A 22 ? O ILE A 34 AB 2 3 N TRP A 25 ? N TRP A 37 O VAL A 80 ? O VAL A 92 AB 3 4 N PHE A 81 ? N PHE A 93 O CYS A 309 ? O CYS A 321 AB 4 5 N PHE A 308 ? N PHE A 320 O VAL A 129 ? O VAL A 141 AB 5 6 N TYR A 140 ? N TYR A 152 O GLY A 284 ? O GLY A 296 AC 1 2 O ASP A 173 ? O ASP A 185 N ALA A 258 ? N ALA A 270 AC 2 3 N MET A 262 ? N MET A 274 O GLY A 137 ? O GLY A 149 AC 3 4 N TYR A 140 ? N TYR A 152 O GLY A 284 ? O GLY A 296 AD 1 2 N GLU A 54 ? N GLU A 66 O ILE A 22 ? O ILE A 34 AD 2 3 N TRP A 25 ? N TRP A 37 O VAL A 80 ? O VAL A 92 AD 3 4 N PHE A 81 ? N PHE A 93 O CYS A 309 ? O CYS A 321 AD 4 5 N PHE A 308 ? N PHE A 320 O VAL A 129 ? O VAL A 141 AD 5 6 N SER A 141 ? N SER A 153 O ALA A 258 ? O ALA A 270 AD 6 7 N ALA A 258 ? N ALA A 270 O ASP A 173 ? O ASP A 185 AE 1 2 O ASP A 173 ? O ASP A 185 N ALA A 258 ? N ALA A 270 AE 2 3 N MET A 262 ? N MET A 274 O GLY A 137 ? O GLY A 149 AE 3 4 N GLY A 136 ? N GLY A 148 O MET A 302 ? O MET A 314 AE 4 5 N GLY A 303 ? N GLY A 315 O GLN A 370 ? O GLN A 382 AF 1 2 N PHE A 122 ? N PHE A 134 O LYS A 125 ? O LYS A 137 # _database_PDB_matrix.entry_id 3ZKK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZKK _atom_sites.fract_transf_matrix[1][1] 0.014696 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008061 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016304 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 13 ? ? ? A . n A 1 2 SER 2 14 ? ? ? A . n A 1 3 HIS 3 15 ? ? ? A . n A 1 4 MET 4 16 ? ? ? A . n A 1 5 ALA 5 17 ? ? ? A . n A 1 6 SER 6 18 ? ? ? A . n A 1 7 MET 7 19 ? ? ? A . n A 1 8 SER 8 20 ? ? ? A . n A 1 9 ALA 9 21 ? ? ? A . n A 1 10 CYS 10 22 ? ? ? A . n A 1 11 GLY 11 23 ? ? ? A . n A 1 12 GLY 12 24 ? ? ? A . n A 1 13 SER 13 25 ? ? ? A . n A 1 14 GLU 14 26 ? ? ? A . n A 1 15 SER 15 27 ? ? ? A . n A 1 16 SER 16 28 ? ? ? A . n A 1 17 SER 17 29 ? ? ? A . n A 1 18 ASP 18 30 30 ASP ASP A . n A 1 19 ASP 19 31 31 ASP ASP A . n A 1 20 LYS 20 32 32 LYS LYS A . n A 1 21 THR 21 33 33 THR THR A . n A 1 22 ILE 22 34 34 ILE ILE A . n A 1 23 THR 23 35 35 THR THR A . n A 1 24 PHE 24 36 36 PHE PHE A . n A 1 25 TRP 25 37 37 TRP TRP A . n A 1 26 HIS 26 38 38 HIS HIS A . n A 1 27 ASN 27 39 39 ASN ASN A . n A 1 28 ALA 28 40 40 ALA ALA A . n A 1 29 SER 29 41 41 SER SER A . n A 1 30 ALA 30 42 42 ALA ALA A . n A 1 31 GLY 31 43 43 GLY GLY A . n A 1 32 GLU 32 44 44 GLU GLU A . n A 1 33 GLY 33 45 45 GLY GLY A . n A 1 34 ARG 34 46 46 ARG ARG A . n A 1 35 GLN 35 47 47 GLN GLN A . n A 1 36 TYR 36 48 48 TYR TYR A . n A 1 37 TRP 37 49 49 TRP TRP A . n A 1 38 GLU 38 50 50 GLU GLU A . n A 1 39 ASN 39 51 51 ASN ASN A . n A 1 40 LEU 40 52 52 LEU LEU A . n A 1 41 ALA 41 53 53 ALA ALA A . n A 1 42 LYS 42 54 54 LYS LYS A . n A 1 43 SER 43 55 55 SER SER A . n A 1 44 PHE 44 56 56 PHE PHE A . n A 1 45 GLU 45 57 57 GLU GLU A . n A 1 46 GLU 46 58 58 GLU GLU A . n A 1 47 ALA 47 59 59 ALA ALA A . n A 1 48 ASN 48 60 60 ASN ASN A . n A 1 49 PRO 49 61 61 PRO PRO A . n A 1 50 GLY 50 62 62 GLY GLY A . n A 1 51 THR 51 63 63 THR THR A . n A 1 52 LYS 52 64 64 LYS LYS A . n A 1 53 VAL 53 65 65 VAL VAL A . n A 1 54 GLU 54 66 66 GLU GLU A . n A 1 55 ILE 55 67 67 ILE ILE A . n A 1 56 GLN 56 68 68 GLN GLN A . n A 1 57 ALA 57 69 69 ALA ALA A . n A 1 58 ILE 58 70 70 ILE ILE A . n A 1 59 GLN 59 71 71 GLN GLN A . n A 1 60 ASN 60 72 72 ASN ASN A . n A 1 61 GLU 61 73 73 GLU GLU A . n A 1 62 ASP 62 74 74 ASP ASP A . n A 1 63 PHE 63 75 75 PHE PHE A . n A 1 64 ALA 64 76 76 ALA ALA A . n A 1 65 GLY 65 77 77 GLY GLY A . n A 1 66 LYS 66 78 78 LYS LYS A . n A 1 67 LEU 67 79 79 LEU LEU A . n A 1 68 GLN 68 80 80 GLN GLN A . n A 1 69 THR 69 81 81 THR THR A . n A 1 70 ALA 70 82 82 ALA ALA A . n A 1 71 MET 71 83 83 MET MET A . n A 1 72 GLN 72 84 84 GLN GLN A . n A 1 73 ASP 73 85 85 ASP ASP A . n A 1 74 PRO 74 86 86 PRO PRO A . n A 1 75 ALA 75 87 87 ALA ALA A . n A 1 76 SER 76 88 88 SER SER A . n A 1 77 GLY 77 89 89 GLY GLY A . n A 1 78 PRO 78 90 90 PRO PRO A . n A 1 79 ASP 79 91 91 ASP ASP A . n A 1 80 VAL 80 92 92 VAL VAL A . n A 1 81 PHE 81 93 93 PHE PHE A . n A 1 82 MET 82 94 94 MET MET A . n A 1 83 SER 83 95 95 SER SER A . n A 1 84 LEU 84 96 96 LEU LEU A . n A 1 85 GLY 85 97 97 GLY GLY A . n A 1 86 GLY 86 98 98 GLY GLY A . n A 1 87 ALA 87 99 99 ALA ALA A . n A 1 88 LYS 88 100 100 LYS LYS A . n A 1 89 THR 89 101 101 THR THR A . n A 1 90 LYS 90 102 102 LYS LYS A . n A 1 91 GLU 91 103 103 GLU GLU A . n A 1 92 MET 92 104 104 MET MET A . n A 1 93 ILE 93 105 105 ILE ILE A . n A 1 94 ASP 94 106 106 ASP ASP A . n A 1 95 ALA 95 107 107 ALA ALA A . n A 1 96 GLY 96 108 108 GLY GLY A . n A 1 97 GLN 97 109 109 GLN GLN A . n A 1 98 VAL 98 110 110 VAL VAL A . n A 1 99 MET 99 111 111 MET MET A . n A 1 100 ASP 100 112 112 ASP ASP A . n A 1 101 LEU 101 113 113 LEU LEU A . n A 1 102 THR 102 114 114 THR THR A . n A 1 103 ASP 103 115 115 ASP ASP A . n A 1 104 LYS 104 116 116 LYS LYS A . n A 1 105 ILE 105 117 117 ILE ILE A . n A 1 106 SER 106 118 118 SER SER A . n A 1 107 ASP 107 119 119 ASP ASP A . n A 1 108 THR 108 120 120 THR THR A . n A 1 109 VAL 109 121 121 VAL VAL A . n A 1 110 LYS 110 122 122 LYS LYS A . n A 1 111 THR 111 123 123 THR THR A . n A 1 112 ASP 112 124 124 ASP ASP A . n A 1 113 MET 113 125 125 MET MET A . n A 1 114 LYS 114 126 126 LYS LYS A . n A 1 115 THR 115 127 127 THR THR A . n A 1 116 THR 116 128 128 THR THR A . n A 1 117 LEU 117 129 129 LEU LEU A . n A 1 118 SER 118 130 130 SER SER A . n A 1 119 ALA 119 131 131 ALA ALA A . n A 1 120 ALA 120 132 132 ALA ALA A . n A 1 121 THR 121 133 133 THR THR A . n A 1 122 PHE 122 134 134 PHE PHE A . n A 1 123 ASP 123 135 135 ASP ASP A . n A 1 124 GLY 124 136 136 GLY GLY A . n A 1 125 LYS 125 137 137 LYS LYS A . n A 1 126 VAL 126 138 138 VAL VAL A . n A 1 127 TYR 127 139 139 TYR TYR A . n A 1 128 GLY 128 140 140 GLY GLY A . n A 1 129 VAL 129 141 141 VAL VAL A . n A 1 130 PRO 130 142 142 PRO PRO A . n A 1 131 VAL 131 143 143 VAL VAL A . n A 1 132 SER 132 144 144 SER SER A . n A 1 133 VAL 133 145 145 VAL VAL A . n A 1 134 GLU 134 146 146 GLU GLU A . n A 1 135 PRO 135 147 147 PRO PRO A . n A 1 136 GLY 136 148 148 GLY GLY A . n A 1 137 GLY 137 149 149 GLY GLY A . n A 1 138 MET 138 150 150 MET MET A . n A 1 139 TRP 139 151 151 TRP TRP A . n A 1 140 TYR 140 152 152 TYR TYR A . n A 1 141 SER 141 153 153 SER SER A . n A 1 142 LYS 142 154 154 LYS LYS A . n A 1 143 ASP 143 155 155 ASP ASP A . n A 1 144 LEU 144 156 156 LEU LEU A . n A 1 145 PHE 145 157 157 PHE PHE A . n A 1 146 LYS 146 158 158 LYS LYS A . n A 1 147 LYS 147 159 159 LYS LYS A . n A 1 148 ALA 148 160 160 ALA ALA A . n A 1 149 GLY 149 161 161 GLY GLY A . n A 1 150 VAL 150 162 162 VAL VAL A . n A 1 151 SER 151 163 163 SER SER A . n A 1 152 ASP 152 164 164 ASP ASP A . n A 1 153 VAL 153 165 165 VAL VAL A . n A 1 154 PRO 154 166 166 PRO PRO A . n A 1 155 ALA 155 167 167 ALA ALA A . n A 1 156 THR 156 168 168 THR THR A . n A 1 157 TYR 157 169 169 TYR TYR A . n A 1 158 GLU 158 170 170 GLU GLU A . n A 1 159 GLU 159 171 171 GLU GLU A . n A 1 160 LEU 160 172 172 LEU LEU A . n A 1 161 LEU 161 173 173 LEU LEU A . n A 1 162 ALA 162 174 174 ALA ALA A . n A 1 163 ASP 163 175 175 ASP ASP A . n A 1 164 ALA 164 176 176 ALA ALA A . n A 1 165 LYS 165 177 177 LYS LYS A . n A 1 166 LYS 166 178 178 LYS LYS A . n A 1 167 LEU 167 179 179 LEU LEU A . n A 1 168 LYS 168 180 180 LYS LYS A . n A 1 169 ASP 169 181 181 ASP ASP A . n A 1 170 SER 170 182 182 SER SER A . n A 1 171 GLY 171 183 183 GLY GLY A . n A 1 172 THR 172 184 184 THR THR A . n A 1 173 ASP 173 185 185 ASP ASP A . n A 1 174 ALA 174 186 186 ALA ALA A . n A 1 175 ILE 175 187 187 ILE ILE A . n A 1 176 ALA 176 188 188 ALA ALA A . n A 1 177 LEU 177 189 189 LEU LEU A . n A 1 178 GLY 178 190 190 GLY GLY A . n A 1 179 ALA 179 191 191 ALA ALA A . n A 1 180 LYS 180 192 192 LYS LYS A . n A 1 181 ASP 181 193 193 ASP ASP A . n A 1 182 ALA 182 194 194 ALA ALA A . n A 1 183 TRP 183 195 195 TRP TRP A . n A 1 184 PRO 184 196 196 PRO PRO A . n A 1 185 ALA 185 197 197 ALA ALA A . n A 1 186 ALA 186 198 198 ALA ALA A . n A 1 187 HIS 187 199 199 HIS HIS A . n A 1 188 TRP 188 200 200 TRP TRP A . n A 1 189 TYR 189 201 201 TYR TYR A . n A 1 190 TYR 190 202 202 TYR TYR A . n A 1 191 TRP 191 203 203 TRP TRP A . n A 1 192 LEU 192 204 204 LEU LEU A . n A 1 193 VAL 193 205 205 VAL VAL A . n A 1 194 LEU 194 206 206 LEU LEU A . n A 1 195 ARG 195 207 207 ARG ARG A . n A 1 196 GLU 196 208 208 GLU GLU A . n A 1 197 CYS 197 209 209 CYS CYS A . n A 1 198 SER 198 210 210 SER SER A . n A 1 199 PRO 199 211 211 PRO PRO A . n A 1 200 GLU 200 212 212 GLU GLU A . n A 1 201 VAL 201 213 213 VAL VAL A . n A 1 202 TYR 202 214 214 TYR TYR A . n A 1 203 ASP 203 215 215 ASP ASP A . n A 1 204 LYS 204 216 216 LYS LYS A . n A 1 205 SER 205 217 217 SER SER A . n A 1 206 VAL 206 218 218 VAL VAL A . n A 1 207 GLN 207 219 219 GLN GLN A . n A 1 208 ASP 208 220 220 ASP ASP A . n A 1 209 HIS 209 221 221 HIS HIS A . n A 1 210 ASP 210 222 222 ASP ASP A . n A 1 211 PHE 211 223 223 PHE PHE A . n A 1 212 SER 212 224 224 SER SER A . n A 1 213 ASN 213 225 225 ASN ASN A . n A 1 214 ALA 214 226 226 ALA ALA A . n A 1 215 CYS 215 227 227 CYS CYS A . n A 1 216 TRP 216 228 228 TRP TRP A . n A 1 217 VAL 217 229 229 VAL VAL A . n A 1 218 ASN 218 230 230 ASN ASN A . n A 1 219 ALA 219 231 231 ALA ALA A . n A 1 220 GLY 220 232 232 GLY GLY A . n A 1 221 LYS 221 233 233 LYS LYS A . n A 1 222 LYS 222 234 234 LYS LYS A . n A 1 223 LEU 223 235 235 LEU LEU A . n A 1 224 GLN 224 236 236 GLN GLN A . n A 1 225 GLU 225 237 237 GLU GLU A . n A 1 226 LEU 226 238 238 LEU LEU A . n A 1 227 LYS 227 239 239 LYS LYS A . n A 1 228 ASP 228 240 240 ASP ASP A . n A 1 229 LEU 229 241 241 LEU LEU A . n A 1 230 LYS 230 242 242 LYS LYS A . n A 1 231 VAL 231 243 243 VAL VAL A . n A 1 232 PHE 232 244 244 PHE PHE A . n A 1 233 ASN 233 245 245 ASN ASN A . n A 1 234 ASP 234 246 246 ASP ASP A . n A 1 235 GLY 235 247 247 GLY GLY A . n A 1 236 PHE 236 248 248 PHE PHE A . n A 1 237 LEU 237 249 249 LEU LEU A . n A 1 238 THR 238 250 250 THR THR A . n A 1 239 THR 239 251 251 THR THR A . n A 1 240 THR 240 252 252 THR THR A . n A 1 241 ALA 241 253 253 ALA ALA A . n A 1 242 GLN 242 254 254 GLN GLN A . n A 1 243 GLN 243 255 255 GLN GLN A . n A 1 244 GLY 244 256 256 GLY GLY A . n A 1 245 ALA 245 257 257 ALA ALA A . n A 1 246 ASN 246 258 258 ASN ASN A . n A 1 247 SER 247 259 259 SER SER A . n A 1 248 SER 248 260 260 SER SER A . n A 1 249 ALA 249 261 261 ALA ALA A . n A 1 250 GLY 250 262 262 GLY GLY A . n A 1 251 LEU 251 263 263 LEU LEU A . n A 1 252 LEU 252 264 264 LEU LEU A . n A 1 253 ALA 253 265 265 ALA ALA A . n A 1 254 ASN 254 266 266 ASN ASN A . n A 1 255 HIS 255 267 267 HIS HIS A . n A 1 256 LYS 256 268 268 LYS LYS A . n A 1 257 ALA 257 269 269 ALA ALA A . n A 1 258 ALA 258 270 270 ALA ALA A . n A 1 259 MET 259 271 271 MET MET A . n A 1 260 GLU 260 272 272 GLU GLU A . n A 1 261 LEU 261 273 273 LEU LEU A . n A 1 262 MET 262 274 274 MET MET A . n A 1 263 GLY 263 275 275 GLY GLY A . n A 1 264 ALA 264 276 276 ALA ALA A . n A 1 265 TRP 265 277 277 TRP TRP A . n A 1 266 GLU 266 278 278 GLU GLU A . n A 1 267 PRO 267 279 279 PRO PRO A . n A 1 268 GLY 268 280 280 GLY GLY A . n A 1 269 VAL 269 281 281 VAL VAL A . n A 1 270 LEU 270 282 282 LEU LEU A . n A 1 271 LYS 271 283 283 LYS LYS A . n A 1 272 ASP 272 284 284 ASP ASP A . n A 1 273 LEU 273 285 285 LEU LEU A . n A 1 274 THR 274 286 286 THR THR A . n A 1 275 PRO 275 287 287 PRO PRO A . n A 1 276 ASP 276 288 288 ASP ASP A . n A 1 277 GLN 277 289 289 GLN GLN A . n A 1 278 LYS 278 290 290 LYS LYS A . n A 1 279 PRO 279 291 291 PRO PRO A . n A 1 280 MET 280 292 292 MET MET A . n A 1 281 ALA 281 293 293 ALA ALA A . n A 1 282 ASP 282 294 294 ASP ASP A . n A 1 283 LEU 283 295 295 LEU LEU A . n A 1 284 GLY 284 296 296 GLY GLY A . n A 1 285 PHE 285 297 297 PHE PHE A . n A 1 286 PHE 286 298 298 PHE PHE A . n A 1 287 ALA 287 299 299 ALA ALA A . n A 1 288 PHE 288 300 300 PHE PHE A . n A 1 289 PRO 289 301 301 PRO PRO A . n A 1 290 GLU 290 302 302 GLU GLU A . n A 1 291 VAL 291 303 303 VAL VAL A . n A 1 292 ALA 292 304 304 ALA ALA A . n A 1 293 GLY 293 305 305 GLY GLY A . n A 1 294 GLY 294 306 306 GLY GLY A . n A 1 295 GLU 295 307 307 GLU GLU A . n A 1 296 GLY 296 308 308 GLY GLY A . n A 1 297 GLU 297 309 309 GLU GLU A . n A 1 298 PRO 298 310 310 PRO PRO A . n A 1 299 GLY 299 311 311 GLY GLY A . n A 1 300 ALA 300 312 312 ALA ALA A . n A 1 301 LEU 301 313 313 LEU LEU A . n A 1 302 MET 302 314 314 MET MET A . n A 1 303 GLY 303 315 315 GLY GLY A . n A 1 304 GLY 304 316 316 GLY GLY A . n A 1 305 VAL 305 317 317 VAL VAL A . n A 1 306 THR 306 318 318 THR THR A . n A 1 307 TYR 307 319 319 TYR TYR A . n A 1 308 PHE 308 320 320 PHE PHE A . n A 1 309 CYS 309 321 321 CYS CYS A . n A 1 310 VAL 310 322 322 VAL VAL A . n A 1 311 ASN 311 323 323 ASN ASN A . n A 1 312 PRO 312 324 324 PRO PRO A . n A 1 313 LYS 313 325 325 LYS LYS A . n A 1 314 ALA 314 326 326 ALA ALA A . n A 1 315 SER 315 327 327 SER SER A . n A 1 316 GLN 316 328 328 GLN GLN A . n A 1 317 THR 317 329 329 THR THR A . n A 1 318 SER 318 330 330 SER SER A . n A 1 319 ILE 319 331 331 ILE ILE A . n A 1 320 ASP 320 332 332 ASP ASP A . n A 1 321 PHE 321 333 333 PHE PHE A . n A 1 322 VAL 322 334 334 VAL VAL A . n A 1 323 ASN 323 335 335 ASN ASN A . n A 1 324 TYR 324 336 336 TYR TYR A . n A 1 325 MET 325 337 337 MET MET A . n A 1 326 GLY 326 338 338 GLY GLY A . n A 1 327 GLU 327 339 339 GLU GLU A . n A 1 328 LYS 328 340 340 LYS LYS A . n A 1 329 LYS 329 341 341 LYS LYS A . n A 1 330 ASN 330 342 342 ASN ASN A . n A 1 331 GLN 331 343 343 GLN GLN A . n A 1 332 GLU 332 344 344 GLU GLU A . n A 1 333 ASP 333 345 345 ASP ASP A . n A 1 334 TYR 334 346 346 TYR TYR A . n A 1 335 ALA 335 347 347 ALA ALA A . n A 1 336 LYS 336 348 348 LYS LYS A . n A 1 337 ALA 337 349 349 ALA ALA A . n A 1 338 PHE 338 350 350 PHE PHE A . n A 1 339 SER 339 351 351 SER SER A . n A 1 340 THR 340 352 352 THR THR A . n A 1 341 ILE 341 353 353 ILE ILE A . n A 1 342 PRO 342 354 354 PRO PRO A . n A 1 343 ALA 343 355 355 ALA ALA A . n A 1 344 SER 344 356 356 SER SER A . n A 1 345 GLU 345 357 357 GLU GLU A . n A 1 346 PRO 346 358 358 PRO PRO A . n A 1 347 ALA 347 359 359 ALA ALA A . n A 1 348 ARG 348 360 360 ARG ARG A . n A 1 349 ALA 349 361 361 ALA ALA A . n A 1 350 VAL 350 362 362 VAL VAL A . n A 1 351 VAL 351 363 363 VAL VAL A . n A 1 352 THR 352 364 364 THR THR A . n A 1 353 ASP 353 365 365 ASP ASP A . n A 1 354 GLU 354 366 366 GLU GLU A . n A 1 355 SER 355 367 367 SER SER A . n A 1 356 LEU 356 368 368 LEU LEU A . n A 1 357 LYS 357 369 369 LYS LYS A . n A 1 358 GLN 358 370 370 GLN GLN A . n A 1 359 VAL 359 371 371 VAL VAL A . n A 1 360 ILE 360 372 372 ILE ILE A . n A 1 361 GLU 361 373 373 GLU GLU A . n A 1 362 TYR 362 374 374 TYR TYR A . n A 1 363 LEU 363 375 375 LEU LEU A . n A 1 364 ASP 364 376 376 ASP ASP A . n A 1 365 LYS 365 377 377 LYS LYS A . n A 1 366 ALA 366 378 378 ALA ALA A . n A 1 367 PRO 367 379 379 PRO PRO A . n A 1 368 SER 368 380 380 SER SER A . n A 1 369 MET 369 381 381 MET MET A . n A 1 370 GLN 370 382 382 GLN GLN A . n A 1 371 LEU 371 383 383 LEU LEU A . n A 1 372 TRP 372 384 384 TRP TRP A . n A 1 373 MET 373 385 385 MET MET A . n A 1 374 ASP 374 386 386 ASP ASP A . n A 1 375 THR 375 387 387 THR THR A . n A 1 376 ALA 376 388 388 ALA ALA A . n A 1 377 LEU 377 389 389 LEU LEU A . n A 1 378 GLY 378 390 390 GLY GLY A . n A 1 379 THR 379 391 391 THR THR A . n A 1 380 ASN 380 392 392 ASN ASN A . n A 1 381 ILE 381 393 393 ILE ILE A . n A 1 382 GLY 382 394 394 GLY GLY A . n A 1 383 ASN 383 395 395 ASN ASN A . n A 1 384 ALA 384 396 396 ALA ALA A . n A 1 385 LEU 385 397 397 LEU LEU A . n A 1 386 ASN 386 398 398 ASN ASN A . n A 1 387 ALA 387 399 399 ALA ALA A . n A 1 388 ALA 388 400 400 ALA ALA A . n A 1 389 VAL 389 401 401 VAL VAL A . n A 1 390 VAL 390 402 402 VAL VAL A . n A 1 391 ASN 391 403 403 ASN ASN A . n A 1 392 MET 392 404 404 MET MET A . n A 1 393 LEU 393 405 405 LEU LEU A . n A 1 394 SER 394 406 406 SER SER A . n A 1 395 GLY 395 407 407 GLY GLY A . n A 1 396 GLN 396 408 408 GLN GLN A . n A 1 397 GLY 397 409 409 GLY GLY A . n A 1 398 SER 398 410 410 SER SER A . n A 1 399 PRO 399 411 411 PRO PRO A . n A 1 400 GLU 400 412 412 GLU GLU A . n A 1 401 ASP 401 413 413 ASP ASP A . n A 1 402 ILE 402 414 414 ILE ILE A . n A 1 403 VAL 403 415 415 VAL VAL A . n A 1 404 LYS 404 416 416 LYS LYS A . n A 1 405 ALA 405 417 417 ALA ALA A . n A 1 406 MET 406 418 418 MET MET A . n A 1 407 GLN 407 419 419 GLN GLN A . n A 1 408 ASP 408 420 420 ASP ASP A . n A 1 409 ALA 409 421 421 ALA ALA A . n A 1 410 ALA 410 422 422 ALA ALA A . n A 1 411 GLN 411 423 423 GLN GLN A . n A 1 412 LYS 412 424 424 LYS LYS A . n A 1 413 GLY 413 425 425 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P33 1 1426 1426 P33 P33 A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-30 2 'Structure model' 1 1 2013-12-11 3 'Structure model' 1 2 2019-01-30 4 'Structure model' 1 3 2019-02-06 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Experimental preparation' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Experimental preparation' 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 4 'Structure model' exptl_crystal_grow 3 5 'Structure model' atom_site 4 5 'Structure model' chem_comp 5 5 'Structure model' entity 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_database_status 9 5 'Structure model' pdbx_entity_branch 10 5 'Structure model' pdbx_entity_branch_descriptor 11 5 'Structure model' pdbx_entity_branch_link 12 5 'Structure model' pdbx_entity_branch_list 13 5 'Structure model' pdbx_entity_nonpoly 14 5 'Structure model' pdbx_nonpoly_scheme 15 5 'Structure model' pdbx_struct_assembly_gen 16 5 'Structure model' struct_asym 17 5 'Structure model' struct_conn 18 5 'Structure model' struct_site 19 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_exptl_crystal_grow.temp' 3 5 'Structure model' '_atom_site.B_iso_or_equiv' 4 5 'Structure model' '_atom_site.Cartn_x' 5 5 'Structure model' '_atom_site.Cartn_y' 6 5 'Structure model' '_atom_site.Cartn_z' 7 5 'Structure model' '_atom_site.auth_asym_id' 8 5 'Structure model' '_atom_site.auth_atom_id' 9 5 'Structure model' '_atom_site.auth_comp_id' 10 5 'Structure model' '_atom_site.auth_seq_id' 11 5 'Structure model' '_atom_site.label_asym_id' 12 5 'Structure model' '_atom_site.label_atom_id' 13 5 'Structure model' '_atom_site.label_comp_id' 14 5 'Structure model' '_atom_site.label_entity_id' 15 5 'Structure model' '_atom_site.type_symbol' 16 5 'Structure model' '_chem_comp.name' 17 5 'Structure model' '_chem_comp.pdbx_synonyms' 18 5 'Structure model' '_chem_comp.type' 19 5 'Structure model' '_entity.formula_weight' 20 5 'Structure model' '_entity.pdbx_description' 21 5 'Structure model' '_entity.pdbx_number_of_molecules' 22 5 'Structure model' '_entity.src_method' 23 5 'Structure model' '_entity.type' 24 5 'Structure model' '_pdbx_database_status.status_code_sf' 25 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 26 5 'Structure model' '_struct_conn.pdbx_dist_value' 27 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE: 1.8.2_1309)' ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XSCALE 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 351 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2088 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 194 ? ? 71.10 -68.31 2 1 LYS A 377 ? ? -141.21 11.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 13 ? A GLY 1 2 1 Y 1 A SER 14 ? A SER 2 3 1 Y 1 A HIS 15 ? A HIS 3 4 1 Y 1 A MET 16 ? A MET 4 5 1 Y 1 A ALA 17 ? A ALA 5 6 1 Y 1 A SER 18 ? A SER 6 7 1 Y 1 A MET 19 ? A MET 7 8 1 Y 1 A SER 20 ? A SER 8 9 1 Y 1 A ALA 21 ? A ALA 9 10 1 Y 1 A CYS 22 ? A CYS 10 11 1 Y 1 A GLY 23 ? A GLY 11 12 1 Y 1 A GLY 24 ? A GLY 12 13 1 Y 1 A SER 25 ? A SER 13 14 1 Y 1 A GLU 26 ? A GLU 14 15 1 Y 1 A SER 27 ? A SER 15 16 1 Y 1 A SER 28 ? A SER 16 17 1 Y 1 A SER 29 ? A SER 17 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 XYP 1 B XYP 1 A XYP 1430 n B 2 XYP 2 B XYP 2 A XYP 1429 n B 2 XYP 3 B XYP 3 A XYP 1428 n B 2 XYP 4 B XYP 4 A XYP 1427 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XYP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpb XYP 'COMMON NAME' GMML 1.0 b-D-xylopyranose XYP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Xylp XYP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DXylpb1-4DXylpb1-4DXylpb1-4DXylpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,4,3/[a212h-1b_1-5]/1-1-1-1/a4-b1_b4-c1_c4-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 XYP C1 O1 1 XYP O4 HO4 sing ? 2 2 3 XYP C1 O1 2 XYP O4 HO4 sing ? 3 2 4 XYP C1 O1 3 XYP O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 XYP 1 n 2 XYP 2 n 2 XYP 3 n 2 XYP 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL P33 4 water HOH #