HEADER HYDROLASE 28-JAN-13 3ZL7 TITLE BACE2 FYNOMER COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 75-460; COMPND 5 SYNONYM: BACE2, ASPARTIC-LIKE PROTEASE 56 KDA, ASPARTYL PROTEASE 1, COMPND 6 ASP1, ASP 1, BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 2, COMPND 7 BETA-SITE APP CLEAVING ENZYME 2, DOWN REGION ASPARTIC PROTEASE, DRAP, COMPND 8 MEMAPSIN-1, MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1, THETA-SECRETASE; COMPND 9 EC: 3.4.23.45; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: FYNOMER 2B-H11; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_VECTOR: PQE12 KEYWDS HYDROLASE, ASPARTYL PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR D.W.BANNER,A.KUGLSTATTER,J.BENZ,M.STIHLE,A.RUF REVDAT 3 20-DEC-23 3ZL7 1 SHEET REVDAT 2 05-JUN-13 3ZL7 1 JRNL REVDAT 1 29-MAY-13 3ZL7 0 JRNL AUTH D.W.BANNER,B.GSELL,J.BENZ,J.BERTSCHINGER,D.BURGER,S.BRACK, JRNL AUTH 2 S.CUPPULERI,M.DEBULPAEP,A.GAST,D.GRABULOVSKI,M.HENNIG, JRNL AUTH 3 H.HILPERT,W.HUBER,A.KUGLSTATTER,E.KUSZNIR,T.LAEREMANS, JRNL AUTH 4 H.MATILE,C.MISCENIC,A.RUFER,D.SCHLATTER,J.STEYEART,M.STIHLE, JRNL AUTH 5 R.THOMA,M.WEBER,A.RUF JRNL TITL MAPPING THE CONFORMATIONAL SPACE ACCESSIBLE TO BACE2 USING JRNL TITL 2 SURFACE MUTANTS AND CO-CRYSTALS WITH FAB-FRAGMENTS, JRNL TITL 3 FYNOMERS, AND XAPERONES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1124 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23695257 JRNL DOI 10.1107/S0907444913006574 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 7602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 360 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.84 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1954 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4001 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1858 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE : 0.3502 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.91 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 96 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.34060 REMARK 3 B22 (A**2) : 5.34060 REMARK 3 B33 (A**2) : -10.68130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.860 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.667 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.857 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.799 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3425 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4663 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1117 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 76 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 496 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3425 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 445 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3624 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.94 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.90 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. ALL LOWER SYMMETRY REMARK 3 SPACE GROUPS WERE TESTED AND REJECTED AS REFINEMENT STATISTICS REMARK 3 NOT SIGNIFICANTLY BETTER REMARK 4 REMARK 4 3ZL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 43.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3ZKQ, 4AG1 REMARK 200 REMARK 200 REMARK: DATA COMPROMISED BY DIFFUSE ICE RING AT 3.68A AND APERTURE REMARK 200 SCATTER AT 3.24A REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M NA/K PHOSPHATE, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.05650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.39650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.39650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.08475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.39650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.39650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.02825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.39650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.39650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.08475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.39650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.39650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.02825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.05650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 PHE A 15 REMARK 465 LEU A 175 REMARK 465 PRO A 176 REMARK 465 VAL A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 LEU A 266 REMARK 465 ILE A 267 REMARK 465 PRO A 268 REMARK 465 ALA A 269 REMARK 465 PHE A 270 REMARK 465 SER A 271 REMARK 465 GLY A 324 REMARK 465 ALA A 325 REMARK 465 GLY A 326 REMARK 465 LEU A 327 REMARK 465 ASN A 328 REMARK 465 ALA A 398 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 GLY C 5 REMARK 465 ASP C 68 REMARK 465 SER C 69 REMARK 465 ILE C 70 REMARK 465 GLN C 71 REMARK 465 GLY C 72 REMARK 465 GLU C 73 REMARK 465 GLN C 74 REMARK 465 LYS C 75 REMARK 465 LEU C 76 REMARK 465 ILE C 77 REMARK 465 SER C 78 REMARK 465 GLU C 79 REMARK 465 GLU C 80 REMARK 465 ASP C 81 REMARK 465 LEU C 82 REMARK 465 HIS C 83 REMARK 465 HIS C 84 REMARK 465 HIS C 85 REMARK 465 HIS C 86 REMARK 465 HIS C 87 REMARK 465 HIS C 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 104 -72.11 -39.87 REMARK 500 ALA A 173 -53.23 -23.91 REMARK 500 TRP A 210 -70.29 -125.00 REMARK 500 ALA A 235 -70.88 -18.65 REMARK 500 LYS A 237 142.74 -171.36 REMARK 500 LEU A 280 -166.81 -102.07 REMARK 500 SER A 286 14.05 53.27 REMARK 500 ASN A 341 -71.48 -105.32 REMARK 500 PHE A 357 73.72 -108.48 REMARK 500 ASP A 390 41.65 -105.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2003 DISTANCE = 5.85 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZKG RELATED DB: PDB REMARK 900 BACE2 MUTANT APO STRUCTURE REMARK 900 RELATED ID: 3ZKI RELATED DB: PDB REMARK 900 BACE2 MUTANT STRUCTURE WITH LIGAND REMARK 900 RELATED ID: 3ZKM RELATED DB: PDB REMARK 900 BACE2 FAB COMPLEX REMARK 900 RELATED ID: 3ZKN RELATED DB: PDB REMARK 900 BACE2 FAB INHIBITOR COMPLEX REMARK 900 RELATED ID: 3ZKQ RELATED DB: PDB REMARK 900 BACE2 XAPERONE COMPLEX REMARK 900 RELATED ID: 3ZKS RELATED DB: PDB REMARK 900 BACE2 XAPERONE COMPLEX WITH INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PDB FILE IS NUMBERED AFTER PDB-ENTRY 2EWY WHICH HAS REMARK 999 NUMBERS 62 LESS THAN THE DATA BANK SEQUENCE. THE MUTATION REMARK 999 HERE IS E269A IN THE PDB FILE AND E331A IN THE DATA BANK REMARK 999 SEQUENCE. REMARK 999 MODIFIED VERSION OF HUMAN FYN TYROSINE KINASE SH3 DOMAIN DBREF 3ZL7 A 13 398 UNP Q9Y5Z0 BACE2_HUMAN 75 460 DBREF 3ZL7 C 1 88 PDB 3ZL7 3ZL7 1 88 SEQADV 3ZL7 ALA A 269 UNP Q9Y5Z0 GLU 331 ENGINEERED MUTATION SEQRES 1 A 386 ALA ASN PHE LEU ALA MET VAL ASP ASN LEU GLN GLY ASP SEQRES 2 A 386 SER GLY ARG GLY TYR TYR LEU GLU MET LEU ILE GLY THR SEQRES 3 A 386 PRO PRO GLN LYS LEU GLN ILE LEU VAL ASP THR GLY SER SEQRES 4 A 386 SER ASN PHE ALA VAL ALA GLY THR PRO HIS SER TYR ILE SEQRES 5 A 386 ASP THR TYR PHE ASP THR GLU ARG SER SER THR TYR ARG SEQRES 6 A 386 SER LYS GLY PHE ASP VAL THR VAL LYS TYR THR GLN GLY SEQRES 7 A 386 SER TRP THR GLY PHE VAL GLY GLU ASP LEU VAL THR ILE SEQRES 8 A 386 PRO LYS GLY PHE ASN THR SER PHE LEU VAL ASN ILE ALA SEQRES 9 A 386 THR ILE PHE GLU SER GLU ASN PHE PHE LEU PRO GLY ILE SEQRES 10 A 386 LYS TRP ASN GLY ILE LEU GLY LEU ALA TYR ALA THR LEU SEQRES 11 A 386 ALA LYS PRO SER SER SER LEU GLU THR PHE PHE ASP SER SEQRES 12 A 386 LEU VAL THR GLN ALA ASN ILE PRO ASN VAL PHE SER MET SEQRES 13 A 386 GLN MET CYS GLY ALA GLY LEU PRO VAL ALA GLY SER GLY SEQRES 14 A 386 THR ASN GLY GLY SER LEU VAL LEU GLY GLY ILE GLU PRO SEQRES 15 A 386 SER LEU TYR LYS GLY ASP ILE TRP TYR THR PRO ILE LYS SEQRES 16 A 386 GLU GLU TRP TYR TYR GLN ILE GLU ILE LEU LYS LEU GLU SEQRES 17 A 386 ILE GLY GLY GLN SER LEU ASN LEU ASP CYS ARG GLU TYR SEQRES 18 A 386 ASN ALA ASP LYS ALA ILE VAL ASP SER GLY THR THR LEU SEQRES 19 A 386 LEU ARG LEU PRO GLN LYS VAL PHE ASP ALA VAL VAL GLU SEQRES 20 A 386 ALA VAL ALA ARG ALA SER LEU ILE PRO ALA PHE SER ASP SEQRES 21 A 386 GLY PHE TRP THR GLY SER GLN LEU ALA CYS TRP THR ASN SEQRES 22 A 386 SER GLU THR PRO TRP SER TYR PHE PRO LYS ILE SER ILE SEQRES 23 A 386 TYR LEU ARG ASP GLU ASN SER SER ARG SER PHE ARG ILE SEQRES 24 A 386 THR ILE LEU PRO GLN LEU TYR ILE GLN PRO MET MET GLY SEQRES 25 A 386 ALA GLY LEU ASN TYR GLU CYS TYR ARG PHE GLY ILE SER SEQRES 26 A 386 PRO SER THR ASN ALA LEU VAL ILE GLY ALA THR VAL MET SEQRES 27 A 386 GLU GLY PHE TYR VAL ILE PHE ASP ARG ALA GLN LYS ARG SEQRES 28 A 386 VAL GLY PHE ALA ALA SER PRO CYS ALA GLU ILE ALA GLY SEQRES 29 A 386 ALA ALA VAL SER GLU ILE SER GLY PRO PHE SER THR GLU SEQRES 30 A 386 ASP VAL ALA SER ASN CYS VAL PRO ALA SEQRES 1 C 88 MET ARG GLY SER GLY VAL THR LEU PHE VAL ALA LEU TYR SEQRES 2 C 88 ASP TYR GLU ALA ARG PRO ASN ARG PRO LEU ASP LEU SER SEQRES 3 C 88 PHE HIS LYS GLY GLU LYS PHE GLN ILE LEU ASN TRP TRP SEQRES 4 C 88 HIS VAL ARG GLY ASP TRP TRP GLU ALA ARG SER LEU THR SEQRES 5 C 88 THR GLY GLU THR GLY TYR ILE PRO SER ASN TYR VAL ALA SEQRES 6 C 88 PRO VAL ASP SER ILE GLN GLY GLU GLN LYS LEU ILE SER SEQRES 7 C 88 GLU GLU ASP LEU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *22(H2 O) HELIX 1 1 TYR A 139 ALA A 143 5 5 HELIX 2 2 THR A 151 ASN A 161 1 11 HELIX 3 3 GLU A 193 TYR A 197 5 5 HELIX 4 4 GLN A 251 SER A 265 1 15 HELIX 5 5 THR A 288 TYR A 292 5 5 HELIX 6 6 LEU A 314 TYR A 318 1 5 HELIX 7 7 GLY A 346 GLU A 351 1 6 HELIX 8 8 ASN C 37 VAL C 41 5 5 SHEET 1 AA 6 MET A 18 LEU A 22 0 SHEET 2 AA 6 GLY A 185 LEU A 189 -1 O GLY A 185 N LEU A 22 SHEET 3 AA 6 VAL A 165 MET A 170 -1 O SER A 167 N VAL A 188 SHEET 4 AA 6 VAL A 355 ASP A 358 -1 O VAL A 355 N MET A 168 SHEET 5 AA 6 ARG A 363 ALA A 368 -1 O ARG A 363 N ASP A 358 SHEET 6 AA 6 LYS A 198 PRO A 205 -1 O LYS A 198 N ALA A 368 SHEET 1 AB 7 TYR A 31 ILE A 36 0 SHEET 2 AB 7 GLN A 41 ASP A 48 -1 O GLN A 41 N ILE A 36 SHEET 3 AB 7 GLY A 133 GLY A 136 1 O GLY A 133 N LEU A 46 SHEET 4 AB 7 ALA A 55 ALA A 57 -1 O ALA A 55 N ILE A 134 SHEET 5 AB 7 PHE A 111 GLU A 122 1 O ALA A 116 N VAL A 56 SHEET 6 AB 7 SER A 91 THR A 102 -1 O SER A 91 N GLU A 122 SHEET 7 AB 7 TYR A 31 ILE A 36 0 SHEET 1 AC 5 GLN A 224 SER A 225 0 SHEET 2 AC 5 ILE A 216 ILE A 221 -1 O ILE A 221 N GLN A 224 SHEET 3 AC 5 ILE A 296 ARG A 301 -1 O SER A 297 N GLU A 220 SHEET 4 AC 5 ARG A 307 ILE A 313 -1 O PHE A 309 N LEU A 300 SHEET 5 AC 5 SER A 380 SER A 387 -1 O GLU A 381 N THR A 312 SHEET 1 AD 2 ALA A 238 VAL A 240 0 SHEET 2 AD 2 LEU A 343 ILE A 345 1 O LEU A 343 N ILE A 239 SHEET 1 AE 2 LEU A 247 PRO A 250 0 SHEET 2 AE 2 ILE A 336 SER A 339 1 O SER A 337 N LEU A 249 SHEET 1 AF 3 ALA A 281 TRP A 283 0 SHEET 2 AF 3 GLU A 330 PHE A 334 -1 O GLU A 330 N TRP A 283 SHEET 3 AF 3 ILE A 319 PRO A 321 -1 O GLN A 320 N ARG A 333 SHEET 1 AG 2 GLU A 373 ILE A 374 0 SHEET 2 AG 2 ALA A 377 ALA A 378 -1 O ALA A 377 N ILE A 374 SHEET 1 CA 5 THR C 56 PRO C 60 0 SHEET 2 CA 5 TRP C 45 SER C 50 -1 O TRP C 46 N ILE C 59 SHEET 3 CA 5 LYS C 32 ILE C 35 -1 O GLN C 34 N ARG C 49 SHEET 4 CA 5 LEU C 8 ALA C 11 -1 O PHE C 9 N PHE C 33 SHEET 5 CA 5 VAL C 64 PRO C 66 -1 O ALA C 65 N VAL C 10 SSBOND 1 CYS A 171 CYS A 371 1555 1555 2.03 SSBOND 2 CYS A 230 CYS A 395 1555 1555 2.03 SSBOND 3 CYS A 282 CYS A 331 1555 1555 2.03 CISPEP 1 THR A 38 PRO A 39 0 1.07 CISPEP 2 LYS A 144 PRO A 145 0 4.57 CISPEP 3 GLY A 384 PRO A 385 0 0.29 CRYST1 84.793 84.793 128.113 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007806 0.00000