HEADER LIGASE 29-JAN-13 3ZL8 TITLE CRYSTAL STRUCTURE OF MURF LIGASE FROM THERMOTOGA MARITIMA IN COMPLEX TITLE 2 WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MURF LIGASE; COMPND 5 EC: 6.3.2.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE, PEPTIDOGLYCAN SYNTHESIS, ADP-FORMING ENZYME, CELL WALL, CELL KEYWDS 2 SHAPE, CELL CYCLE, NUCLEOTIDE-BINDING, ATP-BINDING, CELL DIVISION EXPDTA X-RAY DIFFRACTION AUTHOR S.FAVINI-STABILE,C.CONTRERAS-MARTEL,N.THIELENS,A.DESSEN REVDAT 3 08-MAY-24 3ZL8 1 REMARK REVDAT 2 18-DEC-13 3ZL8 1 JRNL REVDAT 1 11-SEP-13 3ZL8 0 JRNL AUTH S.FAVINI-STABILE,C.CONTRERAS-MARTEL,N.THIELENS,A.DESSEN JRNL TITL MREB AND MURG AS SCAFFOLDS FOR THE CYTOPLASMIC STEPS OF JRNL TITL 2 PEPTIDOGLYCAN BIOSYNTHESIS JRNL REF ENVIRON.MICROBIOL. V. 15 3218 2013 JRNL REFN ISSN 1462-2912 JRNL PMID 23826965 JRNL DOI 10.1111/1462-2920.12171 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 45628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.00000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.755 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3476 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3419 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4685 ; 1.268 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7878 ; 0.639 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 5.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;32.394 ;23.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 648 ;13.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.411 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3836 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 767 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1709 ; 2.099 ; 1.131 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1708 ; 2.088 ; 1.131 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2135 ; 2.396 ; 1.703 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1767 ; 3.378 ; 1.632 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6895 ; 5.230 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 96 ;30.357 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7004 ; 8.390 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8022 14.1854 5.7991 REMARK 3 T TENSOR REMARK 3 T11: 0.0045 T22: 0.0515 REMARK 3 T33: 0.1157 T12: 0.0048 REMARK 3 T13: 0.0056 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.0841 L22: 4.3234 REMARK 3 L33: 2.6410 L12: 1.3475 REMARK 3 L13: -0.7951 L23: -1.0556 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: -0.0105 S13: 0.2036 REMARK 3 S21: 0.0327 S22: -0.0511 S23: 0.3028 REMARK 3 S31: -0.0218 S32: -0.0872 S33: -0.0362 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0516 0.1403 -0.2531 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0592 REMARK 3 T33: 0.0603 T12: 0.0120 REMARK 3 T13: -0.0073 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.8187 L22: 0.9015 REMARK 3 L33: 1.8290 L12: 0.4133 REMARK 3 L13: 0.3949 L23: 0.6263 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: -0.1751 S13: 0.1536 REMARK 3 S21: 0.1338 S22: -0.0444 S23: -0.0061 REMARK 3 S31: -0.0543 S32: 0.0041 S33: 0.0444 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9292 -2.7703 -4.3936 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.1043 REMARK 3 T33: 0.0664 T12: 0.0178 REMARK 3 T13: 0.0047 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.6895 L22: 4.9787 REMARK 3 L33: 2.3118 L12: 1.0842 REMARK 3 L13: 0.2381 L23: 0.7390 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 0.0753 S13: 0.1966 REMARK 3 S21: -0.2254 S22: -0.0747 S23: -0.0003 REMARK 3 S31: -0.1785 S32: -0.1206 S33: 0.1083 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6170 -12.5696 -19.7958 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0712 REMARK 3 T33: 0.0480 T12: -0.0035 REMARK 3 T13: 0.0036 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.1029 L22: 1.0225 REMARK 3 L33: 1.6098 L12: -0.0361 REMARK 3 L13: 0.3645 L23: -0.2335 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0858 S13: 0.0273 REMARK 3 S21: -0.0515 S22: 0.0362 S23: 0.0153 REMARK 3 S31: 0.0370 S32: -0.0563 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 422 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4700 7.1406 -36.0545 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0802 REMARK 3 T33: 0.0421 T12: -0.0102 REMARK 3 T13: -0.0328 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.7726 L22: 1.8386 REMARK 3 L33: 1.6057 L12: 0.5280 REMARK 3 L13: 0.1558 L23: -0.1172 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: -0.0202 S13: 0.0062 REMARK 3 S21: -0.0244 S22: 0.0371 S23: 0.0115 REMARK 3 S31: -0.1012 S32: 0.0113 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 427 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5051 16.3194 -38.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.5580 T22: 0.3321 REMARK 3 T33: 0.3451 T12: 0.4083 REMARK 3 T13: 0.1398 T23: 0.1229 REMARK 3 L TENSOR REMARK 3 L11: 15.5103 L22: 25.7972 REMARK 3 L33: 14.0828 L12: 7.5564 REMARK 3 L13: 11.8520 L23: -4.5470 REMARK 3 S TENSOR REMARK 3 S11: -0.1512 S12: -0.6264 S13: 0.9954 REMARK 3 S21: -0.5231 S22: -0.3355 S23: 0.8126 REMARK 3 S31: -0.2212 S32: -0.7090 S33: 0.4867 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 3ZL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 46.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 5.5, 45 REMARK 280 -49%(V/V) 2-METHYL-2,4-PENTANEDIOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.11450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.58200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.79750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.58200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.11450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.79750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 428 REMARK 465 ALA A 429 REMARK 465 LEU A 430 REMARK 465 GLU A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 81 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 53 -57.58 -136.47 REMARK 500 LYS A 229 -122.00 -99.62 REMARK 500 ASP A 246 -3.03 74.90 REMARK 500 PHE A 294 76.71 91.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1441 DBREF 3ZL8 A 1 426 UNP Q9WY78 Q9WY78_THEMA 1 426 SEQADV 3ZL8 ALA A 427 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 ALA A 428 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 ALA A 429 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 LEU A 430 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 GLU A 431 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 HIS A 432 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 HIS A 433 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 HIS A 434 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 HIS A 435 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 HIS A 436 UNP Q9WY78 EXPRESSION TAG SEQADV 3ZL8 HIS A 437 UNP Q9WY78 EXPRESSION TAG SEQRES 1 A 437 MET LYS ASP LEU LEU THR ARG ARG PHE VAL LEU ASN SER SEQRES 2 A 437 LYS GLU VAL ARG GLU GLY ASP VAL PHE VAL ALA VAL LYS SEQRES 3 A 437 GLY LYS ARG PHE ASP GLY HIS ASP PHE ILE ASP GLU ALA SEQRES 4 A 437 LEU ARG ASN GLY ALA TYR ALA ILE ILE ALA GLU ARG LYS SEQRES 5 A 437 THR VAL ASN SER ASP ARG ILE PHE LEU VAL GLU SER SER SEQRES 6 A 437 VAL ASP THR LEU ALA LYS LEU ALA ARG GLU LYS LEU GLY SEQRES 7 A 437 ASN PHE SER GLY THR VAL VAL GLY VAL THR GLY SER SER SEQRES 8 A 437 GLY LYS THR THR THR LYS GLU ILE LEU TYR ASN LEU LEU SEQRES 9 A 437 LYS ASN LYS ARG SER VAL PHE LYS THR PRO GLY ASN MET SEQRES 10 A 437 ASN THR GLU TYR GLY LEU PRO LEU SER ILE LEU ASN ASP SEQRES 11 A 437 TYR LYS GLY GLU GLU ILE LEU VAL LEU GLU MET ALA ALA SEQRES 12 A 437 SER ARG PRO GLY ASP ILE ALA HIS LEU CYS LYS ILE ALA SEQRES 13 A 437 PRO PRO ASP VAL ALA VAL LEU LEU ASN VAL GLY SER ALA SEQRES 14 A 437 HIS LEU GLU PHE PHE GLY THR ARG GLU ARG ILE MET GLU SEQRES 15 A 437 THR LYS MET GLU ILE ILE LYS HIS SER LYS GLU ASN ALA SEQRES 16 A 437 ILE ALA VAL THR LEU PHE ASP ASP PRO ASP LEU ARG LYS SEQRES 17 A 437 GLU VAL PRO ARG TYR ARG ASN THR LEU PHE PHE GLY LYS SEQRES 18 A 437 GLU GLY GLY ASP SER VAL LEU LYS ASP TRP TRP TYR TYR SEQRES 19 A 437 GLU GLY SER THR ILE ALA GLU PHE GLU ALA PHE ASP SER SEQRES 20 A 437 LEU PHE THR VAL LYS LEU SER GLY TYR TRP ASN GLY GLY SEQRES 21 A 437 GLN LEU LEU ASN ILE ALA ALA SER LEU CYS VAL MET ARG SEQRES 22 A 437 THR LEU GLY GLU THR VAL ASP ILE PHE ASP LEU ALA SER SEQRES 23 A 437 LEU LYS THR VAL PRO GLY ARG PHE ASN VAL ARG GLU LYS SEQRES 24 A 437 LYS GLY VAL LEU ILE VAL ASP ASP THR TYR ASN ALA SER SEQRES 25 A 437 PRO GLU ALA PHE GLN THR SER ILE GLU ALA LEU LEU ARG SEQRES 26 A 437 PHE PRO GLY LYS LYS PHE ALA VAL VAL GLY ALA MET LYS SEQRES 27 A 437 GLU LEU GLY GLU ARG SER LYS GLU PHE HIS GLU GLU LEU SEQRES 28 A 437 GLY GLU ARG LEU ASN VAL LEU ASP GLY VAL TYR VAL PHE SEQRES 29 A 437 LEU SER GLU PRO GLU ALA GLU TRP ILE LYS SER LYS LYS SEQRES 30 A 437 ILE ILE LEU LYS SER ASP ASP PRO GLU LYS ILE ALA LYS SEQRES 31 A 437 ASP LEU ALA THR ARG VAL LYS LYS GLY ASP VAL VAL LEU SEQRES 32 A 437 PHE LYS ALA SER ARG ALA VAL ARG ILE GLU ARG VAL LEU SEQRES 33 A 437 GLU MET PHE GLU LYS GLU LEU GLU LYS ARG ALA ALA ALA SEQRES 34 A 437 LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A1000 6 HET ADP A1441 27 HETNAM GOL GLYCEROL HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *265(H2 O) HELIX 1 1 LYS A 2 ARG A 7 5 6 HELIX 2 2 ASN A 12 VAL A 16 5 5 HELIX 3 3 GLY A 32 ASP A 34 5 3 HELIX 4 4 PHE A 35 ASN A 42 1 8 HELIX 5 5 SER A 64 GLY A 78 1 15 HELIX 6 6 GLY A 92 LYS A 105 1 14 HELIX 7 7 TYR A 121 TYR A 131 1 11 HELIX 8 8 GLY A 147 ALA A 156 1 10 HELIX 9 9 HIS A 170 GLY A 175 1 6 HELIX 10 10 THR A 176 MET A 185 1 10 HELIX 11 11 MET A 185 HIS A 190 1 6 HELIX 12 12 ASP A 203 VAL A 210 1 8 HELIX 13 13 PRO A 211 TYR A 213 5 3 HELIX 14 14 ASN A 258 LEU A 275 1 18 HELIX 15 15 ASP A 280 SER A 286 1 7 HELIX 16 16 SER A 312 LEU A 324 1 13 HELIX 17 17 LEU A 340 GLU A 342 5 3 HELIX 18 18 ARG A 343 ASN A 356 1 14 HELIX 19 19 GLU A 367 ILE A 373 5 7 HELIX 20 20 ASP A 384 THR A 394 1 11 HELIX 21 21 SER A 407 ARG A 411 5 5 HELIX 22 22 ILE A 412 ALA A 427 1 16 SHEET 1 AA 4 PHE A 9 VAL A 10 0 SHEET 2 AA 4 VAL A 21 VAL A 23 1 O VAL A 21 N VAL A 10 SHEET 3 AA 4 ALA A 46 ALA A 49 1 O ALA A 46 N PHE A 22 SHEET 4 AA 4 ILE A 59 LEU A 61 1 O PHE A 60 N ALA A 49 SHEET 1 AB 9 VAL A 110 LYS A 112 0 SHEET 2 AB 9 ILE A 136 GLU A 140 1 O ILE A 136 N PHE A 111 SHEET 3 AB 9 THR A 83 THR A 88 1 O THR A 83 N LEU A 137 SHEET 4 AB 9 VAL A 160 LEU A 163 1 O VAL A 160 N GLY A 86 SHEET 5 AB 9 ILE A 196 LEU A 200 1 O ILE A 196 N ALA A 161 SHEET 6 AB 9 ASN A 215 GLY A 220 1 O ASN A 215 N ALA A 197 SHEET 7 AB 9 SER A 226 TYR A 234 1 O SER A 226 N GLY A 220 SHEET 8 AB 9 SER A 237 ALA A 244 -1 O SER A 237 N TYR A 234 SHEET 9 AB 9 SER A 247 SER A 254 -1 O SER A 247 N ALA A 244 SHEET 1 AC 6 ASN A 295 LYS A 299 0 SHEET 2 AC 6 VAL A 302 ASP A 307 -1 O VAL A 302 N LYS A 299 SHEET 3 AC 6 VAL A 401 LYS A 405 1 O VAL A 402 N VAL A 305 SHEET 4 AC 6 LYS A 330 VAL A 334 1 O PHE A 331 N LEU A 403 SHEET 5 AC 6 GLY A 360 PHE A 364 1 O GLY A 360 N ALA A 332 SHEET 6 AC 6 ILE A 378 SER A 382 1 N ILE A 379 O VAL A 361 SITE 1 AC1 4 ARG A 325 ASP A 359 LYS A 377 HOH A2167 SITE 1 AC2 20 SER A 90 SER A 91 GLY A 92 LYS A 93 SITE 2 AC2 20 THR A 94 THR A 95 ASN A 258 GLY A 260 SITE 3 AC2 20 ASN A 264 ARG A 293 PHE A 294 ASP A 307 SITE 4 AC2 20 ASN A 310 LYS A 405 HOH A2065 HOH A2070 SITE 5 AC2 20 HOH A2071 HOH A2119 HOH A2120 HOH A2181 CRYST1 48.229 49.595 177.164 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020734 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005644 0.00000