HEADER PROTEIN TRANSPORT 30-JAN-13 3ZLC TITLE CRYSTAL STRUCTURE OF ERV41P COMPND MOL_ID: 1; COMPND 2 MOLECULE: ER-DERIVED VESICLES PROTEIN ERV41; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ERV41P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 ATCC: 204508; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PFHMSP-N KEYWDS PROTEIN TRANSPORT, EARLY SECRETORY PATHWAY, ENDOPLASMIC RETICULUM, KEYWDS 2 COPII VESICLE EXPDTA X-RAY DIFFRACTION AUTHOR E.I.BITEROVA,M.SVARD,D.D.D.POSSNER,J.E.GUY REVDAT 3 12-JUN-13 3ZLC 1 JRNL REVDAT 2 03-APR-13 3ZLC 1 JRNL REVDAT 1 27-MAR-13 3ZLC 0 JRNL AUTH E.I.BITEROVA,M.SVARD,D.D.D.POSSNER,J.E.GUY JRNL TITL THE CRYSTAL STRUCTURE OF THE LUMENAL DOMAIN OF ERV41P, A JRNL TITL 2 PROTEIN INVOLVED IN TRANSPORT BETWEEN THE ENDOPLASMIC JRNL TITL 3 RETICULUM AND GOLGI APPARATUS JRNL REF J.MOL.BIOL. V. 425 2208 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23524136 JRNL DOI 10.1016/J.JMB.2013.03.024 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.999 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.140 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.00 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.80 REMARK 3 NUMBER OF REFLECTIONS : 31839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1675 REMARK 3 R VALUE (WORKING SET) : 0.1648 REMARK 3 FREE R VALUE : 0.2061 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.3 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1537 - 4.8165 0.98 2169 145 0.1858 0.2087 REMARK 3 2 4.8165 - 3.8235 0.99 2148 143 0.1416 0.1745 REMARK 3 3 3.8235 - 3.3403 0.99 2167 146 0.1492 0.1871 REMARK 3 4 3.3403 - 3.0350 1.00 2162 144 0.1695 0.2077 REMARK 3 5 3.0350 - 2.8175 1.00 2142 144 0.1752 0.2012 REMARK 3 6 2.8175 - 2.6514 1.00 2139 143 0.1775 0.2768 REMARK 3 7 2.6514 - 2.5186 1.00 2161 145 0.1664 0.2272 REMARK 3 8 2.5186 - 2.4090 1.00 2138 144 0.1664 0.2098 REMARK 3 9 2.4090 - 2.3162 1.00 2162 145 0.1629 0.2011 REMARK 3 10 2.3162 - 2.2363 1.00 2122 142 0.1605 0.1999 REMARK 3 11 2.2363 - 2.1664 1.00 2148 144 0.1571 0.2213 REMARK 3 12 2.1664 - 2.1044 1.00 2159 145 0.1671 0.2247 REMARK 3 13 2.1044 - 2.0490 0.98 2111 141 0.1758 0.2235 REMARK 3 14 2.0490 - 1.9990 0.90 1912 128 0.1918 0.2326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.16 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3725 REMARK 3 ANGLE : 1.213 5077 REMARK 3 CHIRALITY : 0.090 561 REMARK 3 PLANARITY : 0.005 666 REMARK 3 DIHEDRAL : 15.855 1397 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 51 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8396 -13.4773 25.3734 REMARK 3 T TENSOR REMARK 3 T11: 0.1280 T22: 0.1345 REMARK 3 T33: 0.1218 T12: 0.0080 REMARK 3 T13: 0.0010 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.9394 L22: 2.1606 REMARK 3 L33: 1.6963 L12: 0.7620 REMARK 3 L13: -0.3718 L23: -0.4406 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0687 S13: -0.1237 REMARK 3 S21: 0.0087 S22: 0.0835 S23: 0.0112 REMARK 3 S31: 0.1454 S32: -0.0827 S33: -0.0268 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESID 51 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4009 4.3204 8.3232 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.1620 REMARK 3 T33: 0.1139 T12: -0.0197 REMARK 3 T13: 0.0290 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.4167 L22: 2.6492 REMARK 3 L33: 1.4663 L12: -1.1261 REMARK 3 L13: 0.7929 L23: -0.9369 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.1010 S13: 0.0643 REMARK 3 S21: -0.0503 S22: 0.0387 S23: -0.0600 REMARK 3 S31: -0.1320 S32: 0.0088 S33: -0.0253 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-13. REMARK 100 THE PDBE ID CODE IS EBI-55677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 210) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 48.14 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.41 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.2 REMARK 200 R MERGE FOR SHELL (I) : 0.27 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.41 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4NO3, 16 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.46750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 46 REMARK 465 ALA A 47 REMARK 465 MET A 48 REMARK 465 GLY A 49 REMARK 465 TYR A 50 REMARK 465 ILE A 119 REMARK 465 ILE A 120 REMARK 465 THR A 121 REMARK 465 PRO A 122 REMARK 465 GLU A 123 REMARK 465 LEU A 124 REMARK 465 ASP A 125 REMARK 465 GLU A 126 REMARK 465 ILE A 127 REMARK 465 LEU A 128 REMARK 465 PHE A 146 REMARK 465 ASP A 147 REMARK 465 GLU A 148 REMARK 465 SER A 149 REMARK 465 ASP A 150 REMARK 465 PRO A 151 REMARK 465 ASN A 152 REMARK 465 LYS A 153 REMARK 465 LEU A 184 REMARK 465 GLY A 185 REMARK 465 TYR A 186 REMARK 465 VAL A 187 REMARK 465 ALA A 188 REMARK 465 SER A 189 REMARK 465 ALA A 271 REMARK 465 LYS A 272 REMARK 465 GLY A 273 REMARK 465 ASP A 294 REMARK 465 VAL A 295 REMARK 465 ARG A 296 REMARK 465 LEU A 297 REMARK 465 GLY B 46 REMARK 465 ALA B 47 REMARK 465 MET B 48 REMARK 465 GLY B 49 REMARK 465 TYR B 50 REMARK 465 ILE B 120 REMARK 465 THR B 121 REMARK 465 PRO B 122 REMARK 465 GLU B 123 REMARK 465 LEU B 124 REMARK 465 LYS B 139 REMARK 465 LEU B 140 REMARK 465 ASP B 141 REMARK 465 THR B 142 REMARK 465 ARG B 143 REMARK 465 SER B 144 REMARK 465 PHE B 145 REMARK 465 PHE B 146 REMARK 465 ASP B 147 REMARK 465 GLU B 148 REMARK 465 SER B 149 REMARK 465 ASP B 150 REMARK 465 PRO B 151 REMARK 465 ASN B 152 REMARK 465 LYS B 153 REMARK 465 ALA B 154 REMARK 465 HIS B 155 REMARK 465 LEU B 156 REMARK 465 ALA B 270 REMARK 465 ALA B 271 REMARK 465 LYS B 272 REMARK 465 GLY B 273 REMARK 465 ASP B 274 REMARK 465 LYS B 275 REMARK 465 ARG B 296 REMARK 465 LEU B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2B ASN A 83 O HOH A 2031 2.19 REMARK 500 OE2 GLU A 102 O HOH A 2026 2.18 REMARK 500 O LEU A 194 O HOH A 2094 2.15 REMARK 500 OE1 GLU B 101 O HOH B 2036 2.18 REMARK 500 OH B TYR B 262 O HOH A 2109 2.15 REMARK 500 O VAL B 269 O HOH B 2105 2.17 REMARK 500 OH TYR B 283 O HOH B 2027 2.12 REMARK 500 O HOH A 2037 O HOH A 2038 2.16 REMARK 500 O HOH A 2048 O HOH A 2084 2.18 REMARK 500 O HOH A 2065 O HOH A 2115 1.85 REMARK 500 O HOH A 2076 O HOH A 2085 2.17 REMARK 500 O HOH B 2004 O HOH B 2005 2.15 REMARK 500 O HOH B 2026 O HOH B 2039 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2035 O HOH A 2078 1655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 76.16 -66.81 REMARK 500 ASN A 74 38.08 -78.57 REMARK 500 ASN A 160 127.92 -39.71 REMARK 500 GLN B 60 71.05 44.23 REMARK 500 ASN B 74 33.62 -77.62 REMARK 500 ILE B 116 -18.44 -46.54 REMARK 500 GLU B 118 130.61 -170.52 REMARK 500 GLU B 126 50.57 -140.82 REMARK 500 ASN B 160 120.50 -38.70 REMARK 500 ASN B 226 105.93 -162.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 113 ASN A 114 -145.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 3ZLC A 49 297 UNP Q04651 ERV41_YEAST 49 297 DBREF 3ZLC B 49 297 UNP Q04651 ERV41_YEAST 49 297 SEQADV 3ZLC GLY A 46 UNP Q04651 EXPRESSION TAG SEQADV 3ZLC ALA A 47 UNP Q04651 EXPRESSION TAG SEQADV 3ZLC MET A 48 UNP Q04651 EXPRESSION TAG SEQADV 3ZLC GLY B 46 UNP Q04651 EXPRESSION TAG SEQADV 3ZLC ALA B 47 UNP Q04651 EXPRESSION TAG SEQADV 3ZLC MET B 48 UNP Q04651 EXPRESSION TAG SEQRES 1 A 252 GLY ALA MET GLY TYR ILE ASP GLN GLN TYR VAL VAL ASP SEQRES 2 A 252 SER GLN VAL ARG ASP THR VAL GLN ILE ASN MET ASP ILE SEQRES 3 A 252 TYR VAL ASN THR LYS CYS ASP TRP LEU GLN ILE ASN VAL SEQRES 4 A 252 ARG ASP GLN THR MET ASP ARG LYS LEU VAL LEU GLU GLU SEQRES 5 A 252 LEU GLN LEU GLU GLU MET PRO PHE PHE ILE PRO TYR ASP SEQRES 6 A 252 THR LYS VAL ASN ASP ILE ASN GLU ILE ILE THR PRO GLU SEQRES 7 A 252 LEU ASP GLU ILE LEU GLY GLU ALA ILE PRO ALA GLU PHE SEQRES 8 A 252 ARG GLU LYS LEU ASP THR ARG SER PHE PHE ASP GLU SER SEQRES 9 A 252 ASP PRO ASN LYS ALA HIS LEU PRO GLU PHE ASN GLY CYS SEQRES 10 A 252 HIS VAL PHE GLY SER ILE PRO VAL ASN ARG VAL SER GLY SEQRES 11 A 252 GLU LEU GLN ILE THR ALA LYS SER LEU GLY TYR VAL ALA SEQRES 12 A 252 SER ARG LYS ALA PRO LEU GLU GLU LEU LYS PHE ASN HIS SEQRES 13 A 252 VAL ILE ASN GLU PHE SER PHE GLY ASP PHE TYR PRO TYR SEQRES 14 A 252 ILE ASP ASN PRO LEU ASP ASN THR ALA GLN PHE ASN GLN SEQRES 15 A 252 ASP GLU PRO LEU THR THR TYR VAL TYR TYR THR SER VAL SEQRES 16 A 252 VAL PRO THR LEU PHE LYS LYS LEU GLY ALA GLU VAL ASP SEQRES 17 A 252 THR ASN GLN TYR SER VAL ASN ASP TYR ARG TYR LEU TYR SEQRES 18 A 252 LYS ASP VAL ALA ALA LYS GLY ASP LYS MET PRO GLY ILE SEQRES 19 A 252 PHE PHE LYS TYR ASN PHE GLU PRO LEU SER ILE VAL VAL SEQRES 20 A 252 SER ASP VAL ARG LEU SEQRES 1 B 252 GLY ALA MET GLY TYR ILE ASP GLN GLN TYR VAL VAL ASP SEQRES 2 B 252 SER GLN VAL ARG ASP THR VAL GLN ILE ASN MET ASP ILE SEQRES 3 B 252 TYR VAL ASN THR LYS CYS ASP TRP LEU GLN ILE ASN VAL SEQRES 4 B 252 ARG ASP GLN THR MET ASP ARG LYS LEU VAL LEU GLU GLU SEQRES 5 B 252 LEU GLN LEU GLU GLU MET PRO PHE PHE ILE PRO TYR ASP SEQRES 6 B 252 THR LYS VAL ASN ASP ILE ASN GLU ILE ILE THR PRO GLU SEQRES 7 B 252 LEU ASP GLU ILE LEU GLY GLU ALA ILE PRO ALA GLU PHE SEQRES 8 B 252 ARG GLU LYS LEU ASP THR ARG SER PHE PHE ASP GLU SER SEQRES 9 B 252 ASP PRO ASN LYS ALA HIS LEU PRO GLU PHE ASN GLY CYS SEQRES 10 B 252 HIS VAL PHE GLY SER ILE PRO VAL ASN ARG VAL SER GLY SEQRES 11 B 252 GLU LEU GLN ILE THR ALA LYS SER LEU GLY TYR VAL ALA SEQRES 12 B 252 SER ARG LYS ALA PRO LEU GLU GLU LEU LYS PHE ASN HIS SEQRES 13 B 252 VAL ILE ASN GLU PHE SER PHE GLY ASP PHE TYR PRO TYR SEQRES 14 B 252 ILE ASP ASN PRO LEU ASP ASN THR ALA GLN PHE ASN GLN SEQRES 15 B 252 ASP GLU PRO LEU THR THR TYR VAL TYR TYR THR SER VAL SEQRES 16 B 252 VAL PRO THR LEU PHE LYS LYS LEU GLY ALA GLU VAL ASP SEQRES 17 B 252 THR ASN GLN TYR SER VAL ASN ASP TYR ARG TYR LEU TYR SEQRES 18 B 252 LYS ASP VAL ALA ALA LYS GLY ASP LYS MET PRO GLY ILE SEQRES 19 B 252 PHE PHE LYS TYR ASN PHE GLU PRO LEU SER ILE VAL VAL SEQRES 20 B 252 SER ASP VAL ARG LEU FORMUL 3 HOH *240(H2 O) HELIX 1 1 LYS A 76 ASP A 78 5 3 HELIX 2 2 PRO A 133 ARG A 137 5 5 HELIX 3 3 LEU A 156 ASN A 160 5 5 HELIX 4 4 PRO A 193 LEU A 197 5 5 HELIX 5 5 LEU A 265 ALA A 270 1 6 HELIX 6 6 LYS B 76 ASP B 78 5 3 HELIX 7 7 VAL B 187 ARG B 190 5 4 HELIX 8 8 PRO B 193 LEU B 197 5 5 HELIX 9 9 LEU B 265 VAL B 269 5 5 SHEET 1 AA 7 ASP A 52 VAL A 57 0 SHEET 2 AA 7 LEU A 288 SER A 293 1 O SER A 289 N VAL A 56 SHEET 3 AA 7 THR A 233 PHE A 245 1 O PRO A 242 N ILE A 290 SHEET 4 AA 7 GLY A 278 PHE A 285 1 O GLY A 278 N TYR A 234 SHEET 5 AA 7 GLY A 175 ALA A 181 -1 O GLY A 175 N TYR A 283 SHEET 6 AA 7 LEU A 80 ASP A 86 -1 O GLN A 81 N THR A 180 SHEET 7 AA 7 LYS A 92 LEU A 93 -1 O LYS A 92 N VAL A 84 SHEET 1 AB 4 ASP A 52 VAL A 57 0 SHEET 2 AB 4 LEU A 288 SER A 293 1 O SER A 289 N VAL A 56 SHEET 3 AB 4 THR A 233 PHE A 245 1 O PRO A 242 N ILE A 290 SHEET 4 AB 4 THR A 254 TYR A 264 -1 O THR A 254 N THR A 243 SHEET 1 AC 6 LEU A 98 GLU A 102 0 SHEET 2 AC 6 CYS A 162 ASN A 171 -1 O HIS A 163 N GLU A 101 SHEET 3 AC 6 THR A 64 VAL A 73 -1 O VAL A 65 N VAL A 170 SHEET 4 AC 6 HIS A 201 PHE A 208 -1 O VAL A 202 N TYR A 72 SHEET 5 AC 6 THR A 222 GLN A 224 -1 O THR A 222 N ILE A 203 SHEET 6 AC 6 LYS A 112 VAL A 113 1 O LYS A 112 N ALA A 223 SHEET 1 BA 7 ASP B 52 VAL B 57 0 SHEET 2 BA 7 LEU B 288 SER B 293 1 O SER B 289 N VAL B 56 SHEET 3 BA 7 THR B 233 PHE B 245 1 O PRO B 242 N ILE B 290 SHEET 4 BA 7 GLY B 278 PHE B 285 1 O GLY B 278 N TYR B 234 SHEET 5 BA 7 GLY B 175 ALA B 181 -1 O GLY B 175 N TYR B 283 SHEET 6 BA 7 LEU B 80 ASP B 86 -1 O GLN B 81 N THR B 180 SHEET 7 BA 7 MET B 89 LEU B 93 -1 O MET B 89 N ASP B 86 SHEET 1 BB 4 ASP B 52 VAL B 57 0 SHEET 2 BB 4 LEU B 288 SER B 293 1 O SER B 289 N VAL B 56 SHEET 3 BB 4 THR B 233 PHE B 245 1 O PRO B 242 N ILE B 290 SHEET 4 BB 4 THR B 254 TYR B 264 -1 O THR B 254 N THR B 243 SHEET 1 BC 6 LEU B 98 PRO B 104 0 SHEET 2 BC 6 ASN B 160 ASN B 171 -1 O GLY B 161 N MET B 103 SHEET 3 BC 6 THR B 64 VAL B 73 -1 O VAL B 65 N VAL B 170 SHEET 4 BC 6 HIS B 201 PHE B 208 -1 O VAL B 202 N TYR B 72 SHEET 5 BC 6 THR B 222 GLN B 224 -1 O THR B 222 N ILE B 203 SHEET 6 BC 6 LYS B 112 VAL B 113 1 O LYS B 112 N ALA B 223 SSBOND 1 CYS A 77 CYS A 162 1555 1555 2.04 SSBOND 2 CYS B 77 CYS B 162 1555 1555 2.05 CRYST1 49.785 76.935 65.116 90.00 104.77 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020086 0.000000 0.005296 0.00000 SCALE2 0.000000 0.012998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015882 0.00000 MTRIX1 1 0.866200 0.074700 0.494000 50.93950 1 MTRIX2 1 0.080500 -0.996700 0.009500 3.74770 1 MTRIX3 1 0.493100 0.031600 -0.869400 8.10150 1