HEADER HYDROLASE 04-FEB-13 3ZM2 TITLE CATALYTIC DOMAIN OF HUMAN SHP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 248-527; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE COMPND 6 PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SHP2, SH-PTP3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: SCS1 ROSETTA T1R; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7HT (MODIFIED PET) KEYWDS HYDROLASE, PTP1B EXPDTA X-RAY DIFFRACTION AUTHOR K.BOHM,A.SCHUETZ,Y.ROSKE,U.HEINEMANN REVDAT 4 20-DEC-23 3ZM2 1 REMARK REVDAT 3 13-MAY-15 3ZM2 1 JRNL REVDAT 2 29-APR-15 3ZM2 1 JRNL REVDAT 1 23-APR-14 3ZM2 0 JRNL AUTH S.GROSSKOPF,C.ECKERT,C.ARKONA,S.RADETZKI,K.BOHM,U.HEINEMANN, JRNL AUTH 2 G.WOLBER,J.VON KRIES,W.BIRCHMEIER,J.RADEMANN JRNL TITL SELECTIVE INHIBITORS OF THE PROTEIN TYROSINE PHOSPHATASE JRNL TITL 2 SHP2 BLOCK CELLULAR MOTILITY AND GROWTH OF CANCER CELLS IN JRNL TITL 3 VITRO AND IN VIVO. JRNL REF CHEMMEDCHEM V. 10 815 2015 JRNL REFN ISSN 1860-7179 JRNL PMID 25877780 JRNL DOI 10.1002/CMDC.201500015 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 3 NUMBER OF REFLECTIONS : 39064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2056 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1662 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.11000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2248 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3048 ; 2.161 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.538 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.140 ;23.772 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 402 ;15.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1717 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 1.715 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2184 ; 2.716 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 913 ; 4.140 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 860 ; 5.820 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6620 25.9180 49.1940 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.1252 REMARK 3 T33: 0.0565 T12: 0.0103 REMARK 3 T13: -0.0098 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.0137 L22: 0.5217 REMARK 3 L33: 6.2990 L12: -0.2083 REMARK 3 L13: -3.3957 L23: 0.4690 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.1629 S13: 0.0992 REMARK 3 S21: 0.0280 S22: 0.1098 S23: 0.0353 REMARK 3 S31: -0.0718 S32: 0.0861 S33: -0.1004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8570 17.1060 40.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.2780 REMARK 3 T33: 0.2169 T12: -0.0573 REMARK 3 T13: 0.0598 T23: -0.1046 REMARK 3 L TENSOR REMARK 3 L11: 1.3184 L22: 8.6678 REMARK 3 L33: 25.1328 L12: 1.7169 REMARK 3 L13: 5.0816 L23: 11.7486 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: 0.2777 S13: -0.1642 REMARK 3 S21: 0.0875 S22: 0.1389 S23: -0.1296 REMARK 3 S31: 0.7084 S32: 0.4070 S33: -0.2380 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9150 18.5570 19.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.1076 T22: 0.0478 REMARK 3 T33: 0.0507 T12: 0.0400 REMARK 3 T13: -0.0172 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.7837 L22: 2.1172 REMARK 3 L33: 2.5395 L12: 0.4109 REMARK 3 L13: -0.4459 L23: -0.5522 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: 0.0394 S13: -0.1659 REMARK 3 S21: -0.0637 S22: -0.0839 S23: -0.2385 REMARK 3 S31: 0.3607 S32: 0.2760 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6290 22.6270 5.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.0727 REMARK 3 T33: 0.0729 T12: -0.0027 REMARK 3 T13: -0.0097 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1546 L22: 0.6069 REMARK 3 L33: 6.5399 L12: 0.0519 REMARK 3 L13: -0.1673 L23: -0.5802 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.0083 S13: -0.0293 REMARK 3 S21: 0.0284 S22: -0.0140 S23: -0.0589 REMARK 3 S31: 0.1972 S32: 0.1918 S33: 0.0504 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8850 25.4060 24.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0768 REMARK 3 T33: 0.1051 T12: -0.0341 REMARK 3 T13: 0.0058 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.7213 L22: 3.2462 REMARK 3 L33: 3.0409 L12: -1.0128 REMARK 3 L13: 1.0543 L23: 0.1033 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.1355 S13: -0.1414 REMARK 3 S21: 0.2532 S22: 0.0132 S23: 0.3869 REMARK 3 S31: 0.1559 S32: -0.4135 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 326 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1110 30.6140 20.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0534 REMARK 3 T33: 0.0609 T12: 0.0057 REMARK 3 T13: -0.0091 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 4.1549 L22: 1.1131 REMARK 3 L33: 4.1761 L12: -0.7321 REMARK 3 L13: -2.4778 L23: 0.5646 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: 0.1317 S13: 0.1047 REMARK 3 S21: -0.0836 S22: 0.0241 S23: -0.0691 REMARK 3 S31: 0.0020 S32: 0.1393 S33: -0.0617 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 337 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3910 35.2390 18.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.0516 T22: 0.0489 REMARK 3 T33: 0.0598 T12: 0.0042 REMARK 3 T13: 0.0029 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.1264 L22: 0.7048 REMARK 3 L33: 1.3681 L12: -0.0531 REMARK 3 L13: -0.0398 L23: 0.0917 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.0481 S13: -0.0047 REMARK 3 S21: -0.0483 S22: -0.0081 S23: -0.0088 REMARK 3 S31: 0.0174 S32: 0.0137 S33: 0.0159 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 362 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9190 38.1090 20.9910 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0961 REMARK 3 T33: 0.0691 T12: -0.0129 REMARK 3 T13: 0.0181 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 5.7026 L22: 2.7202 REMARK 3 L33: 1.1577 L12: -0.6966 REMARK 3 L13: 0.9247 L23: 0.1579 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: -0.1852 S13: -0.0699 REMARK 3 S21: 0.1159 S22: 0.0066 S23: -0.1445 REMARK 3 S31: 0.0271 S32: 0.0937 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9720 44.5930 8.9500 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.0845 REMARK 3 T33: 0.0511 T12: -0.0079 REMARK 3 T13: 0.0158 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.6042 L22: 8.2347 REMARK 3 L33: 2.5568 L12: 1.0649 REMARK 3 L13: 0.5848 L23: 2.1685 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.1344 S13: 0.0568 REMARK 3 S21: -0.2829 S22: -0.0448 S23: 0.0413 REMARK 3 S31: -0.1870 S32: 0.0670 S33: 0.0485 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 387 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8360 49.4380 23.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.0437 REMARK 3 T33: 0.0694 T12: -0.0095 REMARK 3 T13: -0.0021 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.1644 L22: 2.0372 REMARK 3 L33: 4.5706 L12: -0.0885 REMARK 3 L13: 1.2275 L23: -0.9466 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: -0.0493 S13: 0.1142 REMARK 3 S21: 0.1661 S22: -0.0569 S23: -0.0366 REMARK 3 S31: -0.4421 S32: -0.0032 S33: 0.1374 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1790 41.1050 11.1560 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.0817 REMARK 3 T33: 0.0794 T12: 0.0123 REMARK 3 T13: -0.0147 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.5660 L22: 3.5946 REMARK 3 L33: 8.5718 L12: -0.9258 REMARK 3 L13: 0.2905 L23: 1.6859 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: 0.3447 S13: -0.0854 REMARK 3 S21: -0.5293 S22: -0.1205 S23: 0.1126 REMARK 3 S31: -0.2016 S32: -0.3303 S33: 0.0245 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4680 41.8350 33.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0527 REMARK 3 T33: 0.1569 T12: -0.0282 REMARK 3 T13: -0.0393 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.3852 L22: 0.1847 REMARK 3 L33: 4.6738 L12: -0.3906 REMARK 3 L13: 1.7917 L23: -0.9184 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: 0.0475 S13: 0.1054 REMARK 3 S21: 0.0483 S22: -0.0676 S23: -0.0411 REMARK 3 S31: -0.2105 S32: 0.3720 S33: 0.1123 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 433 A 447 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5080 42.6150 32.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0639 REMARK 3 T33: 0.1233 T12: 0.0074 REMARK 3 T13: 0.0359 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.2765 L22: 0.5275 REMARK 3 L33: 5.3334 L12: -0.5059 REMARK 3 L13: 3.7322 L23: 0.1186 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: -0.1883 S13: 0.1131 REMARK 3 S21: 0.0117 S22: -0.0554 S23: 0.0088 REMARK 3 S31: -0.1224 S32: -0.3529 S33: 0.1438 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 448 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1460 33.3110 29.4960 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0392 REMARK 3 T33: 0.0504 T12: -0.0060 REMARK 3 T13: 0.0016 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.8441 L22: 0.8145 REMARK 3 L33: 1.3266 L12: -0.1535 REMARK 3 L13: 0.2230 L23: -0.1560 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0169 S13: 0.0087 REMARK 3 S21: 0.0141 S22: 0.0043 S23: 0.0402 REMARK 3 S31: -0.0125 S32: -0.0551 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 477 A 487 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1020 33.1010 42.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.2807 REMARK 3 T33: 0.1905 T12: -0.0279 REMARK 3 T13: 0.0598 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 3.9736 L22: 5.3745 REMARK 3 L33: 8.6549 L12: 1.2251 REMARK 3 L13: -1.9247 L23: -3.3967 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: -0.2099 S13: -0.3273 REMARK 3 S21: 0.1832 S22: 0.2073 S23: 0.7613 REMARK 3 S31: 0.2359 S32: -1.1442 S33: -0.1039 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 488 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1540 22.5390 36.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.0445 REMARK 3 T33: 0.0659 T12: -0.0120 REMARK 3 T13: -0.0133 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.0302 L22: 1.9385 REMARK 3 L33: 5.8795 L12: 0.1301 REMARK 3 L13: -0.2369 L23: 0.4175 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.1119 S13: -0.0528 REMARK 3 S21: 0.1722 S22: 0.0336 S23: 0.1338 REMARK 3 S31: 0.2488 S32: -0.2389 S33: -0.0328 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 504 A 519 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3240 31.2090 42.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0557 REMARK 3 T33: 0.0469 T12: -0.0087 REMARK 3 T13: -0.0084 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.3450 L22: 3.5428 REMARK 3 L33: 3.2109 L12: -0.6630 REMARK 3 L13: -0.8445 L23: 1.1164 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.1548 S13: -0.0110 REMARK 3 S21: 0.1679 S22: 0.0741 S23: -0.0732 REMARK 3 S31: 0.1075 S32: 0.0837 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 520 A 524 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6340 41.3750 46.0050 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.3696 REMARK 3 T33: 0.2611 T12: 0.2029 REMARK 3 T13: 0.1213 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 10.8240 L22: 4.4779 REMARK 3 L33: 1.8909 L12: -6.0831 REMARK 3 L13: -2.8222 L23: 0.4829 REMARK 3 S TENSOR REMARK 3 S11: -0.2741 S12: -0.9871 S13: 1.0061 REMARK 3 S21: 0.6289 S22: 0.8905 S23: -0.2235 REMARK 3 S31: -0.4403 S32: -0.1402 S33: -0.6163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 256-261, 314-323 AND 408-410 ARE DISORDERED. REMARK 4 REMARK 4 3ZM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B7O REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-22% (W/V) PEG3350 0.1-0.2 M SODIUM REMARK 280 CITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 256 REMARK 465 GLN A 257 REMARK 465 GLU A 258 REMARK 465 CYS A 259 REMARK 465 LYS A 260 REMARK 465 LEU A 261 REMARK 465 GLU A 312A REMARK 465 PHE A 312B REMARK 465 GLU A 312C REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 GLN A 408 REMARK 465 GLY A 409 REMARK 465 ASN A 410 REMARK 465 GLN A 526 REMARK 465 ARG A 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU A 439 CE2 PHE A 469 1.43 REMARK 500 CD ARG A 421 O HOH A 2150 1.79 REMARK 500 CD2 LEU A 439 CZ PHE A 469 1.81 REMARK 500 OG SER A 264 OD2 ASP A 286 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 351 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 384 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 431 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 465 CG - CD - NE ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 512 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 512 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 389 134.24 -179.14 REMARK 500 VAL A 406 -36.82 -37.77 REMARK 500 ILE A 463 -39.46 -130.82 REMARK 500 VAL A 505 99.63 71.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZM0 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN SHP2 REMARK 900 RELATED ID: 3ZM1 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN SHP2 REMARK 900 RELATED ID: 3ZM3 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN SHP2 DBREF 3ZM2 A 248 527 UNP Q06124 PTN11_HUMAN 248 527 SEQADV 3ZM2 GLY A 244 UNP Q06124 EXPRESSION TAG SEQADV 3ZM2 ALA A 245 UNP Q06124 EXPRESSION TAG SEQADV 3ZM2 HIS A 246 UNP Q06124 EXPRESSION TAG SEQADV 3ZM2 MET A 247 UNP Q06124 EXPRESSION TAG SEQRES 1 A 284 GLY ALA HIS MET TRP GLU GLU PHE GLU THR LEU GLN GLN SEQRES 2 A 284 GLN GLU CYS LYS LEU LEU TYR SER ARG LYS GLU GLY GLN SEQRES 3 A 284 ARG GLN GLU ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE SEQRES 4 A 284 LEU PRO PHE ASP HIS THR ARG VAL VAL LEU HIS ASP GLY SEQRES 5 A 284 ASP PRO ASN GLU PRO VAL SER ASP TYR ILE ASN ALA ASN SEQRES 6 A 284 ILE ILE MET PRO GLU PHE GLU THR LYS CYS ASN ASN SER SEQRES 7 A 284 LYS PRO LYS LYS SER TYR ILE ALA THR GLN GLY CYS LEU SEQRES 8 A 284 GLN ASN THR VAL ASN ASP PHE TRP ARG MET VAL PHE GLN SEQRES 9 A 284 GLU ASN SER ARG VAL ILE VAL MET THR THR LYS GLU VAL SEQRES 10 A 284 GLU ARG GLY LYS SER LYS CYS VAL LYS TYR TRP PRO ASP SEQRES 11 A 284 GLU TYR ALA LEU LYS GLU TYR GLY VAL MET ARG VAL ARG SEQRES 12 A 284 ASN VAL LYS GLU SER ALA ALA HIS ASP TYR THR LEU ARG SEQRES 13 A 284 GLU LEU LYS LEU SER LYS VAL GLY GLN GLY ASN THR GLU SEQRES 14 A 284 ARG THR VAL TRP GLN TYR HIS PHE ARG THR TRP PRO ASP SEQRES 15 A 284 HIS GLY VAL PRO SER ASP PRO GLY GLY VAL LEU ASP PHE SEQRES 16 A 284 LEU GLU GLU VAL HIS HIS LYS GLN GLU SER ILE MET ASP SEQRES 17 A 284 ALA GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY SEQRES 18 A 284 ARG THR GLY THR PHE ILE VAL ILE ASP ILE LEU ILE ASP SEQRES 19 A 284 ILE ILE ARG GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL SEQRES 20 A 284 PRO LYS THR ILE GLN MET VAL ARG SER GLN ARG SER GLY SEQRES 21 A 284 MET VAL GLN THR GLU ALA GLN TYR ARG PHE ILE TYR MET SEQRES 22 A 284 ALA VAL GLN HIS TYR ILE GLU THR LEU GLN ARG FORMUL 2 HOH *205(H2 O) HELIX 1 1 GLU A 250 GLN A 255 5 6 HELIX 2 2 LYS A 266 ARG A 270 5 5 HELIX 3 3 ARG A 270 ASN A 277 5 8 HELIX 4 4 PHE A 285 HIS A 287 5 3 HELIX 5 5 LEU A 334 ASN A 336 5 3 HELIX 6 6 THR A 337 GLU A 348 1 12 HELIX 7 7 PRO A 432 SER A 448 1 17 HELIX 8 8 ILE A 463 GLY A 483 1 21 HELIX 9 9 ASP A 489 SER A 499 1 11 HELIX 10 10 THR A 507 LEU A 525 1 19 SHEET 1 AA 9 ARG A 289 VAL A 291 0 SHEET 2 AA 9 TYR A 304 ILE A 310 -1 N ILE A 305 O VAL A 290 SHEET 3 AA 9 TYR A 327 GLN A 331 -1 O TYR A 327 N ILE A 310 SHEET 4 AA 9 VAL A 455 CYS A 459 1 O VAL A 455 N ILE A 328 SHEET 5 AA 9 VAL A 352 MET A 355 1 O VAL A 352 N VAL A 456 SHEET 6 AA 9 ARG A 413 PHE A 420 1 O TRP A 416 N ILE A 353 SHEET 7 AA 9 TYR A 396 LYS A 405 -1 O THR A 397 N HIS A 419 SHEET 8 AA 9 MET A 383 ALA A 392 -1 O ARG A 384 N SER A 404 SHEET 9 AA 9 LEU A 377 TYR A 380 -1 O LYS A 378 N VAL A 385 SHEET 1 AB 2 VAL A 360 GLU A 361 0 SHEET 2 AB 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 CRYST1 40.123 42.061 49.287 72.04 80.39 74.65 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024923 -0.006842 -0.002414 0.00000 SCALE2 0.000000 0.024654 -0.007131 0.00000 SCALE3 0.000000 0.000000 0.021421 0.00000