HEADER HYDROLASE 06-FEB-13 3ZM8 TITLE CRYSTAL STRUCTURE OF PODOSPORA ANSERINA GH26-CBM35 BETA-(1,4)- TITLE 2 MANNANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH26 ENDO-BETA-1,4-MANNANASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-1,4-MANNANASE; COMPND 5 EC: 3.2.1.78; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PODOSPORA ANSERINA; SOURCE 3 ORGANISM_TAXID: 515849; SOURCE 4 STRAIN: S MAT+; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZAC KEYWDS HYDROLASE, GLYCOSYL HYDROLASE, CAZY, GH5 EXPDTA X-RAY DIFFRACTION AUTHOR M.COUTURIER,A.ROUSSEL,A.ROSENGREN,P.LEONE,H.STALBRAND,J.G.BERRIN REVDAT 4 20-DEC-23 3ZM8 1 HETSYN REVDAT 3 29-JUL-20 3ZM8 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 12-JUN-13 3ZM8 1 JRNL REVDAT 1 17-APR-13 3ZM8 0 JRNL AUTH M.COUTURIER,A.ROUSSEL,A.ROSENGREN,P.LEONE,H.STALBRAND, JRNL AUTH 2 J.G.BERRIN JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF GLYCOSIDE HYDROLASE JRNL TITL 2 FAMILIES 5 AND 26 BETA-(1,4)-MANNANASES FROM PODOSPORA JRNL TITL 3 ANSERINA REVEAL DIFFERENCES UPON MANNO-OLIGOSACCHARIDES JRNL TITL 4 CATALYSIS. JRNL REF J.BIOL.CHEM. V. 288 14624 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23558681 JRNL DOI 10.1074/JBC.M113.459438 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2902 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2332 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2748 REMARK 3 BIN R VALUE (WORKING SET) : 0.2296 REMARK 3 BIN FREE R VALUE : 0.2925 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.31 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3493 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.49890 REMARK 3 B22 (A**2) : -2.49890 REMARK 3 B33 (A**2) : 4.99780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.364 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.705 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.333 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.580 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.327 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3633 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4986 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1175 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 97 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 526 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3633 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 475 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4150 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.63 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=CA HG. NUMBER OF REMARK 3 ATOMS WITH PROPER CCP4 ATOM TYPE=3674. NUMBER WITH APPROX REMARK 3 DEFAULT CCP4 ATOM TYPE=0. NUMBER TREATED BY BAD NON-BONDED REMARK 3 CONTACTS=2. REMARK 4 REMARK 4 3ZM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 2QHA, 2BVT, 2VX4 AND 2WHK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.0, 0.2 M NACL, 0.8 M REMARK 280 POTASSIUM SODIUM TARTRATE, 1 MM HGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 179.14467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.57233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.35850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.78617 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 223.93083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 179.14467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 89.57233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.78617 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 134.35850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 223.93083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 SER A -1 REMARK 465 ILE A 0 REMARK 465 LYS A 1 REMARK 465 PRO A 2 REMARK 465 CYS A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 450 REMARK 465 ASP A 451 REMARK 465 GLU A 452 REMARK 465 GLN A 453 REMARK 465 LYS A 454 REMARK 465 LEU A 455 REMARK 465 ILE A 456 REMARK 465 SER A 457 REMARK 465 GLU A 458 REMARK 465 GLU A 459 REMARK 465 ASP A 460 REMARK 465 LEU A 461 REMARK 465 ASN A 462 REMARK 465 SER A 463 REMARK 465 ALA A 464 REMARK 465 VAL A 465 REMARK 465 ASP A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 7 82.74 -68.04 REMARK 500 ASP A 41 -77.55 -97.28 REMARK 500 ALA A 67 55.68 -97.65 REMARK 500 TYR A 69 33.67 -99.40 REMARK 500 ALA A 90 -109.84 -100.08 REMARK 500 ASN A 116 -80.30 -111.78 REMARK 500 ASP A 137 55.21 -90.19 REMARK 500 GLU A 172 136.82 81.37 REMARK 500 ASN A 263 73.16 -118.99 REMARK 500 ASN A 406 45.74 -81.09 REMARK 500 PHE A 417 -79.25 -128.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2063 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A2096 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH A2098 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2117 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A2130 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A2140 DISTANCE = 8.90 ANGSTROMS REMARK 525 HOH A2143 DISTANCE = 8.46 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1450 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 13 OE1 REMARK 620 2 GLU A 15 OE1 102.6 REMARK 620 3 GLU A 15 OE2 80.6 47.6 REMARK 620 4 THR A 32 O 72.8 122.3 75.6 REMARK 620 5 GLY A 35 O 158.8 86.9 92.7 86.1 REMARK 620 6 ASP A 123 O 81.8 85.5 123.4 145.5 118.1 REMARK 620 7 ASP A 123 OD1 85.9 160.0 152.4 77.4 91.3 77.8 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AE" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZIZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PODOSPORA ANSERINA GH5 BETA-(1,4) -MANNANASE DBREF 3ZM8 A 1 449 UNP E2GHW2 E2GHW2_PODAS 1 449 SEQADV 3ZM8 MET A -2 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 SER A -1 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 ILE A 0 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 GLY A 450 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 ASP A 451 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 GLU A 452 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 GLN A 453 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 LYS A 454 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 LEU A 455 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 ILE A 456 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 SER A 457 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 GLU A 458 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 GLU A 459 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 ASP A 460 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 LEU A 461 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 ASN A 462 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 SER A 463 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 ALA A 464 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 VAL A 465 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 ASP A 466 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 HIS A 467 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 HIS A 468 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 HIS A 469 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 HIS A 470 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 HIS A 471 UNP E2GHW2 EXPRESSION TAG SEQADV 3ZM8 HIS A 472 UNP E2GHW2 EXPRESSION TAG SEQRES 1 A 475 MET SER ILE LYS PRO CYS LYS PRO ARG ASP GLY PRO VAL SEQRES 2 A 475 THR TYR GLU ALA GLU ASP ALA ILE LEU THR GLY THR THR SEQRES 3 A 475 VAL ASP THR ALA GLN VAL GLY TYR THR GLY ARG GLY TYR SEQRES 4 A 475 VAL THR GLY PHE ASP GLU GLY SER ASP LYS ILE THR PHE SEQRES 5 A 475 GLN ILE SER SER ALA THR THR LYS LEU TYR ASP LEU SER SEQRES 6 A 475 ILE ARG TYR ALA ALA ILE TYR GLY ASP LYS ARG THR ASN SEQRES 7 A 475 VAL VAL LEU ASN ASN GLY ALA VAL SER GLU VAL PHE PHE SEQRES 8 A 475 PRO ALA GLY ASP SER PHE THR SER VAL ALA ALA GLY GLN SEQRES 9 A 475 VAL LEU LEU ASN ALA GLY GLN ASN THR ILE ASP ILE VAL SEQRES 10 A 475 ASN ASN TRP GLY TRP TYR LEU ILE ASP SER ILE THR LEU SEQRES 11 A 475 THR PRO SER ALA PRO ARG PRO PRO HIS ASP ILE ASN PRO SEQRES 12 A 475 ASN LEU ASN ASN PRO ASN ALA ASP THR ASN ALA LYS LYS SEQRES 13 A 475 LEU TYR SER TYR LEU ARG SER VAL TYR GLY ASN LYS ILE SEQRES 14 A 475 ILE SER GLY GLN GLN GLU LEU HIS HIS ALA GLU TRP ILE SEQRES 15 A 475 ARG GLN GLN THR GLY LYS THR PRO ALA LEU VAL ALA VAL SEQRES 16 A 475 ASP LEU MET ASP TYR SER PRO SER ARG VAL GLU ARG GLY SEQRES 17 A 475 THR THR SER HIS ALA VAL GLU ASP ALA ILE ALA HIS HIS SEQRES 18 A 475 ASN ALA GLY GLY ILE VAL SER VAL LEU TRP HIS TRP ASN SEQRES 19 A 475 ALA PRO VAL GLY LEU TYR ASP THR GLU GLU ASN LYS TRP SEQRES 20 A 475 TRP SER GLY PHE TYR THR ARG ALA THR ASP PHE ASP ILE SEQRES 21 A 475 ALA ALA THR LEU ALA ASN PRO GLN GLY ALA ASN TYR THR SEQRES 22 A 475 LEU LEU ILE ARG ASP ILE ASP ALA ILE ALA VAL GLN LEU SEQRES 23 A 475 LYS ARG LEU GLU ALA ALA GLY VAL PRO VAL LEU TRP ARG SEQRES 24 A 475 PRO LEU HIS GLU ALA GLU GLY GLY TRP PHE TRP TRP GLY SEQRES 25 A 475 ALA LYS GLY PRO GLU PRO ALA LYS GLN LEU TRP ASP ILE SEQRES 26 A 475 LEU TYR GLU ARG LEU THR VAL HIS HIS GLY LEU ASP ASN SEQRES 27 A 475 LEU ILE TRP VAL TRP ASN SER ILE LEU GLU ASP TRP TYR SEQRES 28 A 475 PRO GLY ASP ASP THR VAL ASP ILE LEU SER ALA ASP VAL SEQRES 29 A 475 TYR ALA GLN GLY ASN GLY PRO MET SER THR GLN TYR ASN SEQRES 30 A 475 GLU LEU ILE ALA LEU GLY ARG ASP LYS LYS MET ILE ALA SEQRES 31 A 475 ALA ALA GLU VAL GLY ALA ALA PRO LEU PRO GLY LEU LEU SEQRES 32 A 475 GLN ALA TYR GLN ALA ASN TRP LEU TRP PHE ALA VAL TRP SEQRES 33 A 475 GLY ASP ASP PHE ILE ASN ASN PRO SER TRP ASN THR VAL SEQRES 34 A 475 ALA VAL LEU ASN GLU ILE TYR ASN SER ASP TYR VAL LEU SEQRES 35 A 475 THR LEU ASP GLU ILE GLN GLY TRP ARG SER GLY ASP GLU SEQRES 36 A 475 GLN LYS LEU ILE SER GLU GLU ASP LEU ASN SER ALA VAL SEQRES 37 A 475 ASP HIS HIS HIS HIS HIS HIS MODRES 3ZM8 ASN A 268 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET CA A1450 1 HET HG A1451 1 HET TLA A1452 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM HG MERCURY (II) ION HETNAM TLA L(+)-TARTARIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 CA CA 2+ FORMUL 4 HG HG 2+ FORMUL 5 TLA C4 H6 O6 FORMUL 6 HOH *143(H2 O) HELIX 1 1 ASP A 148 TYR A 162 1 15 HELIX 2 2 GLU A 172 GLY A 184 1 13 HELIX 3 3 MET A 195 TYR A 197 5 3 HELIX 4 4 SER A 198 GLU A 203 1 6 HELIX 5 5 HIS A 209 ALA A 220 1 12 HELIX 6 6 LYS A 243 GLY A 247 5 5 HELIX 7 7 THR A 250 ALA A 252 5 3 HELIX 8 8 ASP A 256 ASN A 263 1 8 HELIX 9 9 GLY A 266 ALA A 289 1 24 HELIX 10 10 GLU A 300 GLY A 304 5 5 HELIX 11 11 TRP A 307 ALA A 310 5 4 HELIX 12 12 GLY A 312 VAL A 329 1 18 HELIX 13 13 MET A 369 GLY A 380 1 12 HELIX 14 14 LEU A 396 TYR A 403 1 8 HELIX 15 15 THR A 425 ASN A 434 1 10 HELIX 16 16 THR A 440 GLN A 445 1 6 SHEET 1 AA 4 VAL A 10 GLU A 13 0 SHEET 2 AA 4 LEU A 121 PRO A 129 -1 O ILE A 125 N TYR A 12 SHEET 3 AA 4 LYS A 57 ALA A 66 -1 O ASP A 60 N THR A 128 SHEET 4 AA 4 THR A 95 LEU A 104 -1 O THR A 95 N TYR A 65 SHEET 1 AB 5 ILE A 18 THR A 20 0 SHEET 2 AB 5 LYS A 46 SER A 53 -1 O LYS A 46 N THR A 20 SHEET 3 AB 5 GLY A 107 VAL A 114 -1 O GLY A 107 N SER A 53 SHEET 4 AB 5 LYS A 72 LEU A 78 -1 O ASN A 75 N VAL A 114 SHEET 5 AB 5 GLU A 85 PHE A 88 -1 O VAL A 86 N THR A 74 SHEET 1 AC 2 THR A 23 ASP A 25 0 SHEET 2 AC 2 TYR A 36 THR A 38 -1 O TYR A 36 N ASP A 25 SHEET 1 AD 2 ILE A 166 ILE A 167 0 SHEET 2 AD 2 VAL A 438 LEU A 439 1 N LEU A 439 O ILE A 166 SHEET 1 AE 9 GLY A 169 GLN A 171 0 SHEET 2 AE 9 LEU A 189 ASP A 193 1 O LEU A 189 N GLN A 170 SHEET 3 AE 9 ILE A 223 LEU A 227 1 O ILE A 223 N VAL A 190 SHEET 4 AE 9 VAL A 293 ARG A 296 1 O LEU A 294 N VAL A 226 SHEET 5 AE 9 LEU A 336 TRP A 340 1 O ILE A 337 N TRP A 295 SHEET 6 AE 9 ILE A 356 VAL A 361 1 O ILE A 356 N TRP A 340 SHEET 7 AE 9 MET A 385 VAL A 391 1 O MET A 385 N LEU A 357 SHEET 8 AE 9 PHE A 410 VAL A 412 1 O ALA A 411 N VAL A 391 SHEET 9 AE 9 GLY A 169 GLN A 171 1 O GLY A 169 N VAL A 412 LINK ND2 ASN A 268 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK OE1 GLU A 13 CA CA A1450 1555 1555 2.29 LINK OE1 GLU A 15 CA CA A1450 1555 1555 2.36 LINK OE2 GLU A 15 CA CA A1450 1555 1555 2.94 LINK O THR A 32 CA CA A1450 1555 1555 2.56 LINK O GLY A 35 CA CA A1450 1555 1555 2.27 LINK O ASP A 123 CA CA A1450 1555 1555 2.75 LINK OD1 ASP A 123 CA CA A1450 1555 1555 2.33 LINK NE2 HIS A 209 HG HG A1451 1555 1555 2.41 CISPEP 1 ALA A 90 GLY A 91 0 1.76 CRYST1 97.490 97.490 268.717 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010257 0.005922 0.000000 0.00000 SCALE2 0.000000 0.011844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003721 0.00000