data_3ZMI # _entry.id 3ZMI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZMI pdb_00003zmi 10.2210/pdb3zmi/pdb PDBE EBI-55775 ? ? WWPDB D_1290055775 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZMH unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L62' PDB 3ZMJ unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L61' PDB 3ZOT unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L29 (DATA SET 2)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZMI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-02-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vinothkumar, K.R.' 1 ? 'Pierrat, O.A.' 2 ? 'Large, J.M.' 3 ? 'Freeman, M.' 4 ? # _citation.id primary _citation.title ;Structure of Rhomboid Protease in Complex with Beta-Lactam Inhibitors Defines the S2' Cavity. ; _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1051 _citation.page_last 1058 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23665170 _citation.pdbx_database_id_DOI 10.1016/J.STR.2013.03.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vinothkumar, K.R.' 1 ? primary 'Pierrat, O.A.' 2 ? primary 'Large, J.M.' 3 ? primary 'Freeman, M.' 4 ? # _cell.entry_id 3ZMI _cell.length_a 110.580 _cell.length_b 110.580 _cell.length_c 128.530 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZMI _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RHOMBOID PROTEASE GLPG' 20214.020 1 3.4.21.105 ? 'CORE TM DOMAIN, RESIDUES 92-270' 'THE BETA LACTAM RING IS OPENED BY THE NUCLEOPHILIC ATTACK OF S201 ON C2-O1 TO FORM A COVALENT BOND' 2 non-polymer syn 'phenyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' 269.295 1 ? ? ? ? 3 non-polymer man 'nonyl beta-D-glucopyranoside' 306.395 6 ? ? ? ? 4 water nat water 18.015 30 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'INTRAMEMBRANE SERINE PROTEASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN GAHIAGLAVGLAMAFVDSL ; _entity_poly.pdbx_seq_one_letter_code_can ;RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN GAHIAGLAVGLAMAFVDSL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ALA n 1 3 GLY n 1 4 PRO n 1 5 VAL n 1 6 THR n 1 7 TRP n 1 8 VAL n 1 9 MET n 1 10 MET n 1 11 ILE n 1 12 ALA n 1 13 CYS n 1 14 VAL n 1 15 VAL n 1 16 VAL n 1 17 PHE n 1 18 ILE n 1 19 ALA n 1 20 MET n 1 21 GLN n 1 22 ILE n 1 23 LEU n 1 24 GLY n 1 25 ASP n 1 26 GLN n 1 27 GLU n 1 28 VAL n 1 29 MET n 1 30 LEU n 1 31 TRP n 1 32 LEU n 1 33 ALA n 1 34 TRP n 1 35 PRO n 1 36 PHE n 1 37 ASP n 1 38 PRO n 1 39 THR n 1 40 LEU n 1 41 LYS n 1 42 PHE n 1 43 GLU n 1 44 PHE n 1 45 TRP n 1 46 ARG n 1 47 TYR n 1 48 PHE n 1 49 THR n 1 50 HIS n 1 51 ALA n 1 52 LEU n 1 53 MET n 1 54 HIS n 1 55 PHE n 1 56 SER n 1 57 LEU n 1 58 MET n 1 59 HIS n 1 60 ILE n 1 61 LEU n 1 62 PHE n 1 63 ASN n 1 64 LEU n 1 65 LEU n 1 66 TRP n 1 67 TRP n 1 68 TRP n 1 69 TYR n 1 70 LEU n 1 71 GLY n 1 72 GLY n 1 73 ALA n 1 74 VAL n 1 75 GLU n 1 76 LYS n 1 77 ARG n 1 78 LEU n 1 79 GLY n 1 80 SER n 1 81 GLY n 1 82 LYS n 1 83 LEU n 1 84 ILE n 1 85 VAL n 1 86 ILE n 1 87 THR n 1 88 LEU n 1 89 ILE n 1 90 SER n 1 91 ALA n 1 92 LEU n 1 93 LEU n 1 94 SER n 1 95 GLY n 1 96 TYR n 1 97 VAL n 1 98 GLN n 1 99 GLN n 1 100 LYS n 1 101 PHE n 1 102 SER n 1 103 GLY n 1 104 PRO n 1 105 TRP n 1 106 PHE n 1 107 GLY n 1 108 GLY n 1 109 LEU n 1 110 SER n 1 111 GLY n 1 112 VAL n 1 113 VAL n 1 114 TYR n 1 115 ALA n 1 116 LEU n 1 117 MET n 1 118 GLY n 1 119 TYR n 1 120 VAL n 1 121 TRP n 1 122 LEU n 1 123 ARG n 1 124 GLY n 1 125 GLU n 1 126 ARG n 1 127 ASP n 1 128 PRO n 1 129 GLN n 1 130 SER n 1 131 GLY n 1 132 ILE n 1 133 TYR n 1 134 LEU n 1 135 GLN n 1 136 ARG n 1 137 GLY n 1 138 LEU n 1 139 ILE n 1 140 ILE n 1 141 PHE n 1 142 ALA n 1 143 LEU n 1 144 ILE n 1 145 TRP n 1 146 ILE n 1 147 VAL n 1 148 ALA n 1 149 GLY n 1 150 TRP n 1 151 PHE n 1 152 ASP n 1 153 LEU n 1 154 PHE n 1 155 GLY n 1 156 MET n 1 157 SER n 1 158 MET n 1 159 ALA n 1 160 ASN n 1 161 GLY n 1 162 ALA n 1 163 HIS n 1 164 ILE n 1 165 ALA n 1 166 GLY n 1 167 LEU n 1 168 ALA n 1 169 VAL n 1 170 GLY n 1 171 LEU n 1 172 ALA n 1 173 MET n 1 174 ALA n 1 175 PHE n 1 176 VAL n 1 177 ASP n 1 178 SER n 1 179 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLPG_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P09391 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZMI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P09391 _struct_ref_seq.db_align_beg 92 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 270 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 92 _struct_ref_seq.pdbx_auth_seq_align_end 270 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BNG D-saccharide n 'nonyl beta-D-glucopyranoside' 'Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside' 'C15 H30 O6' 306.395 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 L6C non-polymer . 'phenyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' ? 'C16 H15 N O3' 269.295 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZMI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.5 _exptl_crystal.density_percent_sol 64.8 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2M NACL, 0.1M BIS-TRIS, PH7.0, 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-10-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9786 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9786 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZMI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 55.29 _reflns.d_resolution_high 2.20 _reflns.number_obs 15423 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.20 _reflns.B_iso_Wilson_estimate 43.23 _reflns.pdbx_redundancy 5.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.80 _reflns_shell.pdbx_redundancy 5.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZMI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15423 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.870 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 99.16 _refine.ls_R_factor_obs 0.2186 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2165 _refine.ls_R_factor_R_free 0.2609 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 778 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.6 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'RESIDUES 245-249 ARE DISORDERED. BNG 407 IS IN A SPECIAL POSITION AND REFINED WITH 0.5 OCCUPANCY.' _refine.pdbx_starting_model 'PDB ENTRY 2XOV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.23 _refine.pdbx_overall_phase_error 23.97 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1383 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1472 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 44.870 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1498 'X-RAY DIFFRACTION' ? f_angle_d 1.053 ? ? 2024 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.727 ? ? 507 'X-RAY DIFFRACTION' ? f_chiral_restr 0.072 ? ? 216 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 237 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.2000 2.3378 2421 0.2413 100.00 0.2977 . . 139 . . 'X-RAY DIFFRACTION' . 2.3378 2.5183 2416 0.2240 100.00 0.2544 . . 138 . . 'X-RAY DIFFRACTION' . 2.5183 2.7717 2439 0.2106 100.00 0.2705 . . 127 . . 'X-RAY DIFFRACTION' . 2.7717 3.1727 2444 0.2060 100.00 0.2619 . . 135 . . 'X-RAY DIFFRACTION' . 3.1727 3.9969 2483 0.2056 100.00 0.2580 . . 116 . . 'X-RAY DIFFRACTION' . 3.9969 44.8793 2442 0.2238 95.00 0.2549 . . 123 . . # _struct.entry_id 3ZMI _struct.title 'Structure of E.coli rhomboid protease GlpG in complex with monobactam L29' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZMI _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, INTRA-MEMBRANE PROTEASE, ACYL ENZYME, BETA LACTAMS, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 3 ? GLY A 24 ? GLY A 94 GLY A 115 1 ? 22 HELX_P HELX_P2 2 GLY A 24 ? ALA A 33 ? GLY A 115 ALA A 124 1 ? 10 HELX_P HELX_P3 3 ASP A 37 ? LYS A 41 ? ASP A 128 LYS A 132 5 ? 5 HELX_P HELX_P4 4 TRP A 45 ? HIS A 50 ? TRP A 136 HIS A 141 1 ? 6 HELX_P HELX_P5 5 ALA A 51 ? MET A 53 ? ALA A 142 MET A 144 5 ? 3 HELX_P HELX_P6 6 SER A 56 ? GLY A 79 ? SER A 147 GLY A 170 1 ? 24 HELX_P HELX_P7 7 GLY A 79 ? GLY A 103 ? GLY A 170 GLY A 194 1 ? 25 HELX_P HELX_P8 8 LEU A 109 ? ASP A 127 ? LEU A 200 ASP A 218 1 ? 19 HELX_P HELX_P9 9 PRO A 128 ? GLY A 131 ? PRO A 219 GLY A 222 5 ? 4 HELX_P HELX_P10 10 GLN A 135 ? PHE A 151 ? GLN A 226 PHE A 242 1 ? 17 HELX_P HELX_P11 11 ALA A 159 ? SER A 178 ? ALA A 250 SER A 269 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id L6C _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C2 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id L6C _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.395 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3ZMI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZMI _atom_sites.fract_transf_matrix[1][1] 0.009043 _atom_sites.fract_transf_matrix[1][2] 0.005221 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010442 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007780 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 92 92 ARG ARG A . n A 1 2 ALA 2 93 93 ALA ALA A . n A 1 3 GLY 3 94 94 GLY GLY A . n A 1 4 PRO 4 95 95 PRO PRO A . n A 1 5 VAL 5 96 96 VAL VAL A . n A 1 6 THR 6 97 97 THR THR A . n A 1 7 TRP 7 98 98 TRP TRP A . n A 1 8 VAL 8 99 99 VAL VAL A . n A 1 9 MET 9 100 100 MET MET A . n A 1 10 MET 10 101 101 MET MET A . n A 1 11 ILE 11 102 102 ILE ILE A . n A 1 12 ALA 12 103 103 ALA ALA A . n A 1 13 CYS 13 104 104 CYS CYS A . n A 1 14 VAL 14 105 105 VAL VAL A . n A 1 15 VAL 15 106 106 VAL VAL A . n A 1 16 VAL 16 107 107 VAL VAL A . n A 1 17 PHE 17 108 108 PHE PHE A . n A 1 18 ILE 18 109 109 ILE ILE A . n A 1 19 ALA 19 110 110 ALA ALA A . n A 1 20 MET 20 111 111 MET MET A . n A 1 21 GLN 21 112 112 GLN GLN A . n A 1 22 ILE 22 113 113 ILE ILE A . n A 1 23 LEU 23 114 114 LEU LEU A . n A 1 24 GLY 24 115 115 GLY GLY A . n A 1 25 ASP 25 116 116 ASP ASP A . n A 1 26 GLN 26 117 117 GLN GLN A . n A 1 27 GLU 27 118 118 GLU GLU A . n A 1 28 VAL 28 119 119 VAL VAL A . n A 1 29 MET 29 120 120 MET MET A . n A 1 30 LEU 30 121 121 LEU LEU A . n A 1 31 TRP 31 122 122 TRP TRP A . n A 1 32 LEU 32 123 123 LEU LEU A . n A 1 33 ALA 33 124 124 ALA ALA A . n A 1 34 TRP 34 125 125 TRP TRP A . n A 1 35 PRO 35 126 126 PRO PRO A . n A 1 36 PHE 36 127 127 PHE PHE A . n A 1 37 ASP 37 128 128 ASP ASP A . n A 1 38 PRO 38 129 129 PRO PRO A . n A 1 39 THR 39 130 130 THR THR A . n A 1 40 LEU 40 131 131 LEU LEU A . n A 1 41 LYS 41 132 132 LYS LYS A . n A 1 42 PHE 42 133 133 PHE PHE A . n A 1 43 GLU 43 134 134 GLU GLU A . n A 1 44 PHE 44 135 135 PHE PHE A . n A 1 45 TRP 45 136 136 TRP TRP A . n A 1 46 ARG 46 137 137 ARG ARG A . n A 1 47 TYR 47 138 138 TYR TYR A . n A 1 48 PHE 48 139 139 PHE PHE A . n A 1 49 THR 49 140 140 THR THR A . n A 1 50 HIS 50 141 141 HIS HIS A . n A 1 51 ALA 51 142 142 ALA ALA A . n A 1 52 LEU 52 143 143 LEU LEU A . n A 1 53 MET 53 144 144 MET MET A . n A 1 54 HIS 54 145 145 HIS HIS A . n A 1 55 PHE 55 146 146 PHE PHE A . n A 1 56 SER 56 147 147 SER SER A . n A 1 57 LEU 57 148 148 LEU LEU A . n A 1 58 MET 58 149 149 MET MET A . n A 1 59 HIS 59 150 150 HIS HIS A . n A 1 60 ILE 60 151 151 ILE ILE A . n A 1 61 LEU 61 152 152 LEU LEU A . n A 1 62 PHE 62 153 153 PHE PHE A . n A 1 63 ASN 63 154 154 ASN ASN A . n A 1 64 LEU 64 155 155 LEU LEU A . n A 1 65 LEU 65 156 156 LEU LEU A . n A 1 66 TRP 66 157 157 TRP TRP A . n A 1 67 TRP 67 158 158 TRP TRP A . n A 1 68 TRP 68 159 159 TRP TRP A . n A 1 69 TYR 69 160 160 TYR TYR A . n A 1 70 LEU 70 161 161 LEU LEU A . n A 1 71 GLY 71 162 162 GLY GLY A . n A 1 72 GLY 72 163 163 GLY GLY A . n A 1 73 ALA 73 164 164 ALA ALA A . n A 1 74 VAL 74 165 165 VAL VAL A . n A 1 75 GLU 75 166 166 GLU GLU A . n A 1 76 LYS 76 167 167 LYS LYS A . n A 1 77 ARG 77 168 168 ARG ARG A . n A 1 78 LEU 78 169 169 LEU LEU A . n A 1 79 GLY 79 170 170 GLY GLY A . n A 1 80 SER 80 171 171 SER SER A . n A 1 81 GLY 81 172 172 GLY GLY A . n A 1 82 LYS 82 173 173 LYS LYS A . n A 1 83 LEU 83 174 174 LEU LEU A . n A 1 84 ILE 84 175 175 ILE ILE A . n A 1 85 VAL 85 176 176 VAL VAL A . n A 1 86 ILE 86 177 177 ILE ILE A . n A 1 87 THR 87 178 178 THR THR A . n A 1 88 LEU 88 179 179 LEU LEU A . n A 1 89 ILE 89 180 180 ILE ILE A . n A 1 90 SER 90 181 181 SER SER A . n A 1 91 ALA 91 182 182 ALA ALA A . n A 1 92 LEU 92 183 183 LEU LEU A . n A 1 93 LEU 93 184 184 LEU LEU A . n A 1 94 SER 94 185 185 SER SER A . n A 1 95 GLY 95 186 186 GLY GLY A . n A 1 96 TYR 96 187 187 TYR TYR A . n A 1 97 VAL 97 188 188 VAL VAL A . n A 1 98 GLN 98 189 189 GLN GLN A . n A 1 99 GLN 99 190 190 GLN GLN A . n A 1 100 LYS 100 191 191 LYS LYS A . n A 1 101 PHE 101 192 192 PHE PHE A . n A 1 102 SER 102 193 193 SER SER A . n A 1 103 GLY 103 194 194 GLY GLY A . n A 1 104 PRO 104 195 195 PRO PRO A . n A 1 105 TRP 105 196 196 TRP TRP A . n A 1 106 PHE 106 197 197 PHE PHE A . n A 1 107 GLY 107 198 198 GLY GLY A . n A 1 108 GLY 108 199 199 GLY GLY A . n A 1 109 LEU 109 200 200 LEU LEU A . n A 1 110 SER 110 201 201 SER SER A . n A 1 111 GLY 111 202 202 GLY GLY A . n A 1 112 VAL 112 203 203 VAL VAL A . n A 1 113 VAL 113 204 204 VAL VAL A . n A 1 114 TYR 114 205 205 TYR TYR A . n A 1 115 ALA 115 206 206 ALA ALA A . n A 1 116 LEU 116 207 207 LEU LEU A . n A 1 117 MET 117 208 208 MET MET A . n A 1 118 GLY 118 209 209 GLY GLY A . n A 1 119 TYR 119 210 210 TYR TYR A . n A 1 120 VAL 120 211 211 VAL VAL A . n A 1 121 TRP 121 212 212 TRP TRP A . n A 1 122 LEU 122 213 213 LEU LEU A . n A 1 123 ARG 123 214 214 ARG ARG A . n A 1 124 GLY 124 215 215 GLY GLY A . n A 1 125 GLU 125 216 216 GLU GLU A . n A 1 126 ARG 126 217 217 ARG ARG A . n A 1 127 ASP 127 218 218 ASP ASP A . n A 1 128 PRO 128 219 219 PRO PRO A . n A 1 129 GLN 129 220 220 GLN GLN A . n A 1 130 SER 130 221 221 SER SER A . n A 1 131 GLY 131 222 222 GLY GLY A . n A 1 132 ILE 132 223 223 ILE ILE A . n A 1 133 TYR 133 224 224 TYR TYR A . n A 1 134 LEU 134 225 225 LEU LEU A . n A 1 135 GLN 135 226 226 GLN GLN A . n A 1 136 ARG 136 227 227 ARG ARG A . n A 1 137 GLY 137 228 228 GLY GLY A . n A 1 138 LEU 138 229 229 LEU LEU A . n A 1 139 ILE 139 230 230 ILE ILE A . n A 1 140 ILE 140 231 231 ILE ILE A . n A 1 141 PHE 141 232 232 PHE PHE A . n A 1 142 ALA 142 233 233 ALA ALA A . n A 1 143 LEU 143 234 234 LEU LEU A . n A 1 144 ILE 144 235 235 ILE ILE A . n A 1 145 TRP 145 236 236 TRP TRP A . n A 1 146 ILE 146 237 237 ILE ILE A . n A 1 147 VAL 147 238 238 VAL VAL A . n A 1 148 ALA 148 239 239 ALA ALA A . n A 1 149 GLY 149 240 240 GLY GLY A . n A 1 150 TRP 150 241 241 TRP TRP A . n A 1 151 PHE 151 242 242 PHE PHE A . n A 1 152 ASP 152 243 243 ASP ASP A . n A 1 153 LEU 153 244 244 LEU LEU A . n A 1 154 PHE 154 245 ? ? ? A . n A 1 155 GLY 155 246 ? ? ? A . n A 1 156 MET 156 247 ? ? ? A . n A 1 157 SER 157 248 ? ? ? A . n A 1 158 MET 158 249 ? ? ? A . n A 1 159 ALA 159 250 250 ALA ALA A . n A 1 160 ASN 160 251 251 ASN ASN A . n A 1 161 GLY 161 252 252 GLY GLY A . n A 1 162 ALA 162 253 253 ALA ALA A . n A 1 163 HIS 163 254 254 HIS HIS A . n A 1 164 ILE 164 255 255 ILE ILE A . n A 1 165 ALA 165 256 256 ALA ALA A . n A 1 166 GLY 166 257 257 GLY GLY A . n A 1 167 LEU 167 258 258 LEU LEU A . n A 1 168 ALA 168 259 259 ALA ALA A . n A 1 169 VAL 169 260 260 VAL VAL A . n A 1 170 GLY 170 261 261 GLY GLY A . n A 1 171 LEU 171 262 262 LEU LEU A . n A 1 172 ALA 172 263 263 ALA ALA A . n A 1 173 MET 173 264 264 MET MET A . n A 1 174 ALA 174 265 265 ALA ALA A . n A 1 175 PHE 175 266 266 PHE PHE A . n A 1 176 VAL 176 267 267 VAL VAL A . n A 1 177 ASP 177 268 268 ASP ASP A . n A 1 178 SER 178 269 269 SER SER A . n A 1 179 LEU 179 270 270 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L6C 1 401 401 L6C L6C A . C 3 BNG 1 402 402 BNG BNG A . D 3 BNG 1 403 403 BNG BNG A . E 3 BNG 1 404 404 BNG BNG A . F 3 BNG 1 405 405 BNG BNG A . G 3 BNG 1 406 406 BNG BNG A . H 3 BNG 1 407 407 BNG BNG A . I 4 HOH 1 2001 2001 HOH HOH A . I 4 HOH 2 2002 2002 HOH HOH A . I 4 HOH 3 2003 2003 HOH HOH A . I 4 HOH 4 2004 2004 HOH HOH A . I 4 HOH 5 2005 2005 HOH HOH A . I 4 HOH 6 2006 2006 HOH HOH A . I 4 HOH 7 2007 2007 HOH HOH A . I 4 HOH 8 2008 2008 HOH HOH A . I 4 HOH 9 2009 2009 HOH HOH A . I 4 HOH 10 2010 2010 HOH HOH A . I 4 HOH 11 2011 2011 HOH HOH A . I 4 HOH 12 2012 2012 HOH HOH A . I 4 HOH 13 2013 2013 HOH HOH A . I 4 HOH 14 2014 2014 HOH HOH A . I 4 HOH 15 2015 2015 HOH HOH A . I 4 HOH 16 2016 2016 HOH HOH A . I 4 HOH 17 2017 2017 HOH HOH A . I 4 HOH 18 2018 2018 HOH HOH A . I 4 HOH 19 2019 2019 HOH HOH A . I 4 HOH 20 2020 2020 HOH HOH A . I 4 HOH 21 2021 2021 HOH HOH A . I 4 HOH 22 2022 2022 HOH HOH A . I 4 HOH 23 2023 2023 HOH HOH A . I 4 HOH 24 2024 2024 HOH HOH A . I 4 HOH 25 2025 2025 HOH HOH A . I 4 HOH 26 2026 2026 HOH HOH A . I 4 HOH 27 2027 2027 HOH HOH A . I 4 HOH 28 2028 2028 HOH HOH A . I 4 HOH 29 2029 2029 HOH HOH A . I 4 HOH 30 2030 2030 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2013-05-29 3 'Structure model' 1 2 2013-08-28 4 'Structure model' 1 3 2019-02-27 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2023-12-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Experimental preparation' 7 4 'Structure model' Other 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' Other 11 5 'Structure model' 'Structure summary' 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Database references' 14 6 'Structure model' 'Refinement description' 15 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' exptl_crystal_grow 3 4 'Structure model' pdbx_database_proc 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' struct_biol 6 4 'Structure model' struct_conn 7 5 'Structure model' chem_comp 8 5 'Structure model' entity 9 5 'Structure model' pdbx_chem_comp_identifier 10 5 'Structure model' pdbx_database_status 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' struct_conn 13 5 'Structure model' struct_site 14 5 'Structure model' struct_site_gen 15 6 'Structure model' chem_comp 16 6 'Structure model' chem_comp_atom 17 6 'Structure model' chem_comp_bond 18 6 'Structure model' database_2 19 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.page_last' 2 4 'Structure model' '_exptl_crystal_grow.method' 3 4 'Structure model' '_exptl_crystal_grow.temp' 4 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_chem_comp.mon_nstd_flag' 7 5 'Structure model' '_chem_comp.name' 8 5 'Structure model' '_chem_comp.type' 9 5 'Structure model' '_entity.pdbx_description' 10 5 'Structure model' '_pdbx_database_status.status_code_sf' 11 5 'Structure model' '_pdbx_entity_nonpoly.name' 12 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 6 'Structure model' '_chem_comp.pdbx_synonyms' 25 6 'Structure model' '_database_2.pdbx_DOI' 26 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE)' ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 3ZMI _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;(3R)-3-(PHENOXYCARBONYLAMINO)-3-PHENYL- PROPANOIC ACID(L29): THE C2 CARBON IS COVALENTLY LINKED TO SER 201 ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 185 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2021 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 93 ? ? -37.98 126.62 2 1 ASP A 218 ? ? -162.47 64.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 92 ? CG ? A ARG 1 CG 2 1 Y 1 A ARG 92 ? CD ? A ARG 1 CD 3 1 Y 1 A ARG 92 ? NE ? A ARG 1 NE 4 1 Y 1 A ARG 92 ? CZ ? A ARG 1 CZ 5 1 Y 1 A ARG 92 ? NH1 ? A ARG 1 NH1 6 1 Y 1 A ARG 92 ? NH2 ? A ARG 1 NH2 7 1 Y 1 A GLN 220 ? CG ? A GLN 129 CG 8 1 Y 1 A GLN 220 ? CD ? A GLN 129 CD 9 1 Y 1 A GLN 220 ? OE1 ? A GLN 129 OE1 10 1 Y 1 A GLN 220 ? NE2 ? A GLN 129 NE2 11 1 N 1 A BNG 402 ? C1 ? C BNG 1 C1 12 1 N 1 A BNG 402 ? C2 ? C BNG 1 C2 13 1 N 1 A BNG 402 ? C3 ? C BNG 1 C3 14 1 N 1 A BNG 402 ? C4 ? C BNG 1 C4 15 1 N 1 A BNG 402 ? C5 ? C BNG 1 C5 16 1 N 1 A BNG 402 ? C6 ? C BNG 1 C6 17 1 N 1 A BNG 402 ? "C7'" ? C BNG 1 "C7'" 18 1 N 1 A BNG 402 ? "C8'" ? C BNG 1 "C8'" 19 1 N 1 A BNG 402 ? "C9'" ? C BNG 1 "C9'" 20 1 N 1 A BNG 402 ? O1 ? C BNG 1 O1 21 1 N 1 A BNG 402 ? O2 ? C BNG 1 O2 22 1 N 1 A BNG 402 ? O3 ? C BNG 1 O3 23 1 N 1 A BNG 402 ? O4 ? C BNG 1 O4 24 1 N 1 A BNG 402 ? O5 ? C BNG 1 O5 25 1 N 1 A BNG 402 ? O6 ? C BNG 1 O6 26 1 N 1 A BNG 403 ? C1 ? D BNG 1 C1 27 1 N 1 A BNG 403 ? C2 ? D BNG 1 C2 28 1 N 1 A BNG 403 ? C3 ? D BNG 1 C3 29 1 N 1 A BNG 403 ? C4 ? D BNG 1 C4 30 1 N 1 A BNG 403 ? C5 ? D BNG 1 C5 31 1 N 1 A BNG 403 ? C6 ? D BNG 1 C6 32 1 N 1 A BNG 403 ? "C7'" ? D BNG 1 "C7'" 33 1 N 1 A BNG 403 ? "C8'" ? D BNG 1 "C8'" 34 1 N 1 A BNG 403 ? "C9'" ? D BNG 1 "C9'" 35 1 N 1 A BNG 403 ? O1 ? D BNG 1 O1 36 1 N 1 A BNG 403 ? O2 ? D BNG 1 O2 37 1 N 1 A BNG 403 ? O3 ? D BNG 1 O3 38 1 N 1 A BNG 403 ? O4 ? D BNG 1 O4 39 1 N 1 A BNG 403 ? O5 ? D BNG 1 O5 40 1 N 1 A BNG 403 ? O6 ? D BNG 1 O6 41 1 N 1 A BNG 404 ? C1 ? E BNG 1 C1 42 1 N 1 A BNG 404 ? C2 ? E BNG 1 C2 43 1 N 1 A BNG 404 ? C3 ? E BNG 1 C3 44 1 N 1 A BNG 404 ? C4 ? E BNG 1 C4 45 1 N 1 A BNG 404 ? C5 ? E BNG 1 C5 46 1 N 1 A BNG 404 ? C6 ? E BNG 1 C6 47 1 N 1 A BNG 404 ? "C7'" ? E BNG 1 "C7'" 48 1 N 1 A BNG 404 ? "C8'" ? E BNG 1 "C8'" 49 1 N 1 A BNG 404 ? "C9'" ? E BNG 1 "C9'" 50 1 N 1 A BNG 404 ? O1 ? E BNG 1 O1 51 1 N 1 A BNG 404 ? O2 ? E BNG 1 O2 52 1 N 1 A BNG 404 ? O3 ? E BNG 1 O3 53 1 N 1 A BNG 404 ? O4 ? E BNG 1 O4 54 1 N 1 A BNG 404 ? O5 ? E BNG 1 O5 55 1 N 1 A BNG 404 ? O6 ? E BNG 1 O6 56 1 N 1 A BNG 405 ? C1 ? F BNG 1 C1 57 1 N 1 A BNG 405 ? C2 ? F BNG 1 C2 58 1 N 1 A BNG 405 ? C3 ? F BNG 1 C3 59 1 N 1 A BNG 405 ? C4 ? F BNG 1 C4 60 1 N 1 A BNG 405 ? C5 ? F BNG 1 C5 61 1 N 1 A BNG 405 ? C6 ? F BNG 1 C6 62 1 N 1 A BNG 405 ? "C6'" ? F BNG 1 "C6'" 63 1 N 1 A BNG 405 ? "C7'" ? F BNG 1 "C7'" 64 1 N 1 A BNG 405 ? "C8'" ? F BNG 1 "C8'" 65 1 N 1 A BNG 405 ? "C9'" ? F BNG 1 "C9'" 66 1 N 1 A BNG 405 ? O1 ? F BNG 1 O1 67 1 N 1 A BNG 405 ? O2 ? F BNG 1 O2 68 1 N 1 A BNG 405 ? O3 ? F BNG 1 O3 69 1 N 1 A BNG 405 ? O4 ? F BNG 1 O4 70 1 N 1 A BNG 405 ? O5 ? F BNG 1 O5 71 1 N 1 A BNG 405 ? O6 ? F BNG 1 O6 72 1 N 1 A BNG 406 ? C1 ? G BNG 1 C1 73 1 N 1 A BNG 406 ? C2 ? G BNG 1 C2 74 1 N 1 A BNG 406 ? C3 ? G BNG 1 C3 75 1 N 1 A BNG 406 ? C4 ? G BNG 1 C4 76 1 N 1 A BNG 406 ? C5 ? G BNG 1 C5 77 1 N 1 A BNG 406 ? C6 ? G BNG 1 C6 78 1 N 1 A BNG 406 ? "C7'" ? G BNG 1 "C7'" 79 1 N 1 A BNG 406 ? "C8'" ? G BNG 1 "C8'" 80 1 N 1 A BNG 406 ? "C9'" ? G BNG 1 "C9'" 81 1 N 1 A BNG 406 ? O1 ? G BNG 1 O1 82 1 N 1 A BNG 406 ? O2 ? G BNG 1 O2 83 1 N 1 A BNG 406 ? O3 ? G BNG 1 O3 84 1 N 1 A BNG 406 ? O4 ? G BNG 1 O4 85 1 N 1 A BNG 406 ? O5 ? G BNG 1 O5 86 1 N 1 A BNG 406 ? O6 ? G BNG 1 O6 87 1 N 1 A BNG 407 ? C1 ? H BNG 1 C1 88 1 N 1 A BNG 407 ? C2 ? H BNG 1 C2 89 1 N 1 A BNG 407 ? C3 ? H BNG 1 C3 90 1 N 1 A BNG 407 ? C4 ? H BNG 1 C4 91 1 N 1 A BNG 407 ? C5 ? H BNG 1 C5 92 1 N 1 A BNG 407 ? C6 ? H BNG 1 C6 93 1 N 1 A BNG 407 ? O2 ? H BNG 1 O2 94 1 N 1 A BNG 407 ? O3 ? H BNG 1 O3 95 1 N 1 A BNG 407 ? O4 ? H BNG 1 O4 96 1 N 1 A BNG 407 ? O5 ? H BNG 1 O5 97 1 N 1 A BNG 407 ? O6 ? H BNG 1 O6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 245 ? A PHE 154 2 1 Y 1 A GLY 246 ? A GLY 155 3 1 Y 1 A MET 247 ? A MET 156 4 1 Y 1 A SER 248 ? A SER 157 5 1 Y 1 A MET 249 ? A MET 158 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BNG C1 C N R 74 BNG C2 C N R 75 BNG C3 C N S 76 BNG C4 C N S 77 BNG C5 C N R 78 BNG C6 C N N 79 BNG "C1'" C N N 80 BNG "C2'" C N N 81 BNG "C3'" C N N 82 BNG "C4'" C N N 83 BNG "C5'" C N N 84 BNG "C6'" C N N 85 BNG "C7'" C N N 86 BNG "C8'" C N N 87 BNG "C9'" C N N 88 BNG O1 O N N 89 BNG O2 O N N 90 BNG O3 O N N 91 BNG O4 O N N 92 BNG O5 O N N 93 BNG O6 O N N 94 BNG H1 H N N 95 BNG H2 H N N 96 BNG H3 H N N 97 BNG H4 H N N 98 BNG H5 H N N 99 BNG H61 H N N 100 BNG H62 H N N 101 BNG "H1'1" H N N 102 BNG "H1'2" H N N 103 BNG "H2'1" H N N 104 BNG "H2'2" H N N 105 BNG "H3'1" H N N 106 BNG "H3'2" H N N 107 BNG "H4'1" H N N 108 BNG "H4'2" H N N 109 BNG "H5'1" H N N 110 BNG "H5'2" H N N 111 BNG "H6'1" H N N 112 BNG "H6'2" H N N 113 BNG "H7'1" H N N 114 BNG "H7'2" H N N 115 BNG "H8'1" H N N 116 BNG "H8'2" H N N 117 BNG "H9'1" H N N 118 BNG "H9'2" H N N 119 BNG "H9'3" H N N 120 BNG HO2 H N N 121 BNG HO3 H N N 122 BNG HO4 H N N 123 BNG HO6 H N N 124 CYS N N N N 125 CYS CA C N R 126 CYS C C N N 127 CYS O O N N 128 CYS CB C N N 129 CYS SG S N N 130 CYS OXT O N N 131 CYS H H N N 132 CYS H2 H N N 133 CYS HA H N N 134 CYS HB2 H N N 135 CYS HB3 H N N 136 CYS HG H N N 137 CYS HXT H N N 138 GLN N N N N 139 GLN CA C N S 140 GLN C C N N 141 GLN O O N N 142 GLN CB C N N 143 GLN CG C N N 144 GLN CD C N N 145 GLN OE1 O N N 146 GLN NE2 N N N 147 GLN OXT O N N 148 GLN H H N N 149 GLN H2 H N N 150 GLN HA H N N 151 GLN HB2 H N N 152 GLN HB3 H N N 153 GLN HG2 H N N 154 GLN HG3 H N N 155 GLN HE21 H N N 156 GLN HE22 H N N 157 GLN HXT H N N 158 GLU N N N N 159 GLU CA C N S 160 GLU C C N N 161 GLU O O N N 162 GLU CB C N N 163 GLU CG C N N 164 GLU CD C N N 165 GLU OE1 O N N 166 GLU OE2 O N N 167 GLU OXT O N N 168 GLU H H N N 169 GLU H2 H N N 170 GLU HA H N N 171 GLU HB2 H N N 172 GLU HB3 H N N 173 GLU HG2 H N N 174 GLU HG3 H N N 175 GLU HE2 H N N 176 GLU HXT H N N 177 GLY N N N N 178 GLY CA C N N 179 GLY C C N N 180 GLY O O N N 181 GLY OXT O N N 182 GLY H H N N 183 GLY H2 H N N 184 GLY HA2 H N N 185 GLY HA3 H N N 186 GLY HXT H N N 187 HIS N N N N 188 HIS CA C N S 189 HIS C C N N 190 HIS O O N N 191 HIS CB C N N 192 HIS CG C Y N 193 HIS ND1 N Y N 194 HIS CD2 C Y N 195 HIS CE1 C Y N 196 HIS NE2 N Y N 197 HIS OXT O N N 198 HIS H H N N 199 HIS H2 H N N 200 HIS HA H N N 201 HIS HB2 H N N 202 HIS HB3 H N N 203 HIS HD1 H N N 204 HIS HD2 H N N 205 HIS HE1 H N N 206 HIS HE2 H N N 207 HIS HXT H N N 208 HOH O O N N 209 HOH H1 H N N 210 HOH H2 H N N 211 ILE N N N N 212 ILE CA C N S 213 ILE C C N N 214 ILE O O N N 215 ILE CB C N S 216 ILE CG1 C N N 217 ILE CG2 C N N 218 ILE CD1 C N N 219 ILE OXT O N N 220 ILE H H N N 221 ILE H2 H N N 222 ILE HA H N N 223 ILE HB H N N 224 ILE HG12 H N N 225 ILE HG13 H N N 226 ILE HG21 H N N 227 ILE HG22 H N N 228 ILE HG23 H N N 229 ILE HD11 H N N 230 ILE HD12 H N N 231 ILE HD13 H N N 232 ILE HXT H N N 233 L6C O1 O N N 234 L6C C2 C N N 235 L6C C3 C N N 236 L6C C4 C N R 237 L6C C12 C Y N 238 L6C C17 C Y N 239 L6C C16 C Y N 240 L6C C15 C Y N 241 L6C C14 C Y N 242 L6C C13 C Y N 243 L6C N1 N N N 244 L6C C5 C N N 245 L6C O2 O N N 246 L6C O3 O N N 247 L6C C6 C Y N 248 L6C C7 C Y N 249 L6C C8 C Y N 250 L6C C9 C Y N 251 L6C C10 C Y N 252 L6C C11 C Y N 253 L6C H31C H N N 254 L6C H32C H N N 255 L6C HXT H N N 256 L6C H4 H N N 257 L6C H1 H N N 258 L6C H17 H N N 259 L6C H13 H N N 260 L6C H16 H N N 261 L6C H15 H N N 262 L6C H14 H N N 263 L6C H7 H N N 264 L6C H11 H N N 265 L6C H8 H N N 266 L6C H9 H N N 267 L6C H10 H N N 268 LEU N N N N 269 LEU CA C N S 270 LEU C C N N 271 LEU O O N N 272 LEU CB C N N 273 LEU CG C N N 274 LEU CD1 C N N 275 LEU CD2 C N N 276 LEU OXT O N N 277 LEU H H N N 278 LEU H2 H N N 279 LEU HA H N N 280 LEU HB2 H N N 281 LEU HB3 H N N 282 LEU HG H N N 283 LEU HD11 H N N 284 LEU HD12 H N N 285 LEU HD13 H N N 286 LEU HD21 H N N 287 LEU HD22 H N N 288 LEU HD23 H N N 289 LEU HXT H N N 290 LYS N N N N 291 LYS CA C N S 292 LYS C C N N 293 LYS O O N N 294 LYS CB C N N 295 LYS CG C N N 296 LYS CD C N N 297 LYS CE C N N 298 LYS NZ N N N 299 LYS OXT O N N 300 LYS H H N N 301 LYS H2 H N N 302 LYS HA H N N 303 LYS HB2 H N N 304 LYS HB3 H N N 305 LYS HG2 H N N 306 LYS HG3 H N N 307 LYS HD2 H N N 308 LYS HD3 H N N 309 LYS HE2 H N N 310 LYS HE3 H N N 311 LYS HZ1 H N N 312 LYS HZ2 H N N 313 LYS HZ3 H N N 314 LYS HXT H N N 315 MET N N N N 316 MET CA C N S 317 MET C C N N 318 MET O O N N 319 MET CB C N N 320 MET CG C N N 321 MET SD S N N 322 MET CE C N N 323 MET OXT O N N 324 MET H H N N 325 MET H2 H N N 326 MET HA H N N 327 MET HB2 H N N 328 MET HB3 H N N 329 MET HG2 H N N 330 MET HG3 H N N 331 MET HE1 H N N 332 MET HE2 H N N 333 MET HE3 H N N 334 MET HXT H N N 335 PHE N N N N 336 PHE CA C N S 337 PHE C C N N 338 PHE O O N N 339 PHE CB C N N 340 PHE CG C Y N 341 PHE CD1 C Y N 342 PHE CD2 C Y N 343 PHE CE1 C Y N 344 PHE CE2 C Y N 345 PHE CZ C Y N 346 PHE OXT O N N 347 PHE H H N N 348 PHE H2 H N N 349 PHE HA H N N 350 PHE HB2 H N N 351 PHE HB3 H N N 352 PHE HD1 H N N 353 PHE HD2 H N N 354 PHE HE1 H N N 355 PHE HE2 H N N 356 PHE HZ H N N 357 PHE HXT H N N 358 PRO N N N N 359 PRO CA C N S 360 PRO C C N N 361 PRO O O N N 362 PRO CB C N N 363 PRO CG C N N 364 PRO CD C N N 365 PRO OXT O N N 366 PRO H H N N 367 PRO HA H N N 368 PRO HB2 H N N 369 PRO HB3 H N N 370 PRO HG2 H N N 371 PRO HG3 H N N 372 PRO HD2 H N N 373 PRO HD3 H N N 374 PRO HXT H N N 375 SER N N N N 376 SER CA C N S 377 SER C C N N 378 SER O O N N 379 SER CB C N N 380 SER OG O N N 381 SER OXT O N N 382 SER H H N N 383 SER H2 H N N 384 SER HA H N N 385 SER HB2 H N N 386 SER HB3 H N N 387 SER HG H N N 388 SER HXT H N N 389 THR N N N N 390 THR CA C N S 391 THR C C N N 392 THR O O N N 393 THR CB C N R 394 THR OG1 O N N 395 THR CG2 C N N 396 THR OXT O N N 397 THR H H N N 398 THR H2 H N N 399 THR HA H N N 400 THR HB H N N 401 THR HG1 H N N 402 THR HG21 H N N 403 THR HG22 H N N 404 THR HG23 H N N 405 THR HXT H N N 406 TRP N N N N 407 TRP CA C N S 408 TRP C C N N 409 TRP O O N N 410 TRP CB C N N 411 TRP CG C Y N 412 TRP CD1 C Y N 413 TRP CD2 C Y N 414 TRP NE1 N Y N 415 TRP CE2 C Y N 416 TRP CE3 C Y N 417 TRP CZ2 C Y N 418 TRP CZ3 C Y N 419 TRP CH2 C Y N 420 TRP OXT O N N 421 TRP H H N N 422 TRP H2 H N N 423 TRP HA H N N 424 TRP HB2 H N N 425 TRP HB3 H N N 426 TRP HD1 H N N 427 TRP HE1 H N N 428 TRP HE3 H N N 429 TRP HZ2 H N N 430 TRP HZ3 H N N 431 TRP HH2 H N N 432 TRP HXT H N N 433 TYR N N N N 434 TYR CA C N S 435 TYR C C N N 436 TYR O O N N 437 TYR CB C N N 438 TYR CG C Y N 439 TYR CD1 C Y N 440 TYR CD2 C Y N 441 TYR CE1 C Y N 442 TYR CE2 C Y N 443 TYR CZ C Y N 444 TYR OH O N N 445 TYR OXT O N N 446 TYR H H N N 447 TYR H2 H N N 448 TYR HA H N N 449 TYR HB2 H N N 450 TYR HB3 H N N 451 TYR HD1 H N N 452 TYR HD2 H N N 453 TYR HE1 H N N 454 TYR HE2 H N N 455 TYR HH H N N 456 TYR HXT H N N 457 VAL N N N N 458 VAL CA C N S 459 VAL C C N N 460 VAL O O N N 461 VAL CB C N N 462 VAL CG1 C N N 463 VAL CG2 C N N 464 VAL OXT O N N 465 VAL H H N N 466 VAL H2 H N N 467 VAL HA H N N 468 VAL HB H N N 469 VAL HG11 H N N 470 VAL HG12 H N N 471 VAL HG13 H N N 472 VAL HG21 H N N 473 VAL HG22 H N N 474 VAL HG23 H N N 475 VAL HXT H N N 476 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BNG C1 C2 sing N N 70 BNG C1 O1 sing N N 71 BNG C1 O5 sing N N 72 BNG C1 H1 sing N N 73 BNG C2 C3 sing N N 74 BNG C2 O2 sing N N 75 BNG C2 H2 sing N N 76 BNG C3 C4 sing N N 77 BNG C3 O3 sing N N 78 BNG C3 H3 sing N N 79 BNG C4 C5 sing N N 80 BNG C4 O4 sing N N 81 BNG C4 H4 sing N N 82 BNG C5 C6 sing N N 83 BNG C5 O5 sing N N 84 BNG C5 H5 sing N N 85 BNG C6 O6 sing N N 86 BNG C6 H61 sing N N 87 BNG C6 H62 sing N N 88 BNG "C1'" "C2'" sing N N 89 BNG "C1'" O1 sing N N 90 BNG "C1'" "H1'1" sing N N 91 BNG "C1'" "H1'2" sing N N 92 BNG "C2'" "C3'" sing N N 93 BNG "C2'" "H2'1" sing N N 94 BNG "C2'" "H2'2" sing N N 95 BNG "C3'" "C4'" sing N N 96 BNG "C3'" "H3'1" sing N N 97 BNG "C3'" "H3'2" sing N N 98 BNG "C4'" "C5'" sing N N 99 BNG "C4'" "H4'1" sing N N 100 BNG "C4'" "H4'2" sing N N 101 BNG "C5'" "C6'" sing N N 102 BNG "C5'" "H5'1" sing N N 103 BNG "C5'" "H5'2" sing N N 104 BNG "C6'" "C7'" sing N N 105 BNG "C6'" "H6'1" sing N N 106 BNG "C6'" "H6'2" sing N N 107 BNG "C7'" "C8'" sing N N 108 BNG "C7'" "H7'1" sing N N 109 BNG "C7'" "H7'2" sing N N 110 BNG "C8'" "C9'" sing N N 111 BNG "C8'" "H8'1" sing N N 112 BNG "C8'" "H8'2" sing N N 113 BNG "C9'" "H9'1" sing N N 114 BNG "C9'" "H9'2" sing N N 115 BNG "C9'" "H9'3" sing N N 116 BNG O2 HO2 sing N N 117 BNG O3 HO3 sing N N 118 BNG O4 HO4 sing N N 119 BNG O6 HO6 sing N N 120 CYS N CA sing N N 121 CYS N H sing N N 122 CYS N H2 sing N N 123 CYS CA C sing N N 124 CYS CA CB sing N N 125 CYS CA HA sing N N 126 CYS C O doub N N 127 CYS C OXT sing N N 128 CYS CB SG sing N N 129 CYS CB HB2 sing N N 130 CYS CB HB3 sing N N 131 CYS SG HG sing N N 132 CYS OXT HXT sing N N 133 GLN N CA sing N N 134 GLN N H sing N N 135 GLN N H2 sing N N 136 GLN CA C sing N N 137 GLN CA CB sing N N 138 GLN CA HA sing N N 139 GLN C O doub N N 140 GLN C OXT sing N N 141 GLN CB CG sing N N 142 GLN CB HB2 sing N N 143 GLN CB HB3 sing N N 144 GLN CG CD sing N N 145 GLN CG HG2 sing N N 146 GLN CG HG3 sing N N 147 GLN CD OE1 doub N N 148 GLN CD NE2 sing N N 149 GLN NE2 HE21 sing N N 150 GLN NE2 HE22 sing N N 151 GLN OXT HXT sing N N 152 GLU N CA sing N N 153 GLU N H sing N N 154 GLU N H2 sing N N 155 GLU CA C sing N N 156 GLU CA CB sing N N 157 GLU CA HA sing N N 158 GLU C O doub N N 159 GLU C OXT sing N N 160 GLU CB CG sing N N 161 GLU CB HB2 sing N N 162 GLU CB HB3 sing N N 163 GLU CG CD sing N N 164 GLU CG HG2 sing N N 165 GLU CG HG3 sing N N 166 GLU CD OE1 doub N N 167 GLU CD OE2 sing N N 168 GLU OE2 HE2 sing N N 169 GLU OXT HXT sing N N 170 GLY N CA sing N N 171 GLY N H sing N N 172 GLY N H2 sing N N 173 GLY CA C sing N N 174 GLY CA HA2 sing N N 175 GLY CA HA3 sing N N 176 GLY C O doub N N 177 GLY C OXT sing N N 178 GLY OXT HXT sing N N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 L6C O1 C2 doub N N 224 L6C C2 C3 sing N N 225 L6C C2 HXT sing N N 226 L6C C3 C4 sing N N 227 L6C C4 C12 sing N N 228 L6C C4 N1 sing N N 229 L6C C12 C17 sing Y N 230 L6C C12 C13 doub Y N 231 L6C C17 C16 doub Y N 232 L6C C16 C15 sing Y N 233 L6C C15 C14 doub Y N 234 L6C C14 C13 sing Y N 235 L6C N1 C5 sing N N 236 L6C C5 O2 doub N N 237 L6C C5 O3 sing N N 238 L6C O3 C6 sing N N 239 L6C C6 C7 sing Y N 240 L6C C6 C11 doub Y N 241 L6C C7 C8 doub Y N 242 L6C C8 C9 sing Y N 243 L6C C9 C10 doub Y N 244 L6C C10 C11 sing Y N 245 L6C C3 H31C sing N N 246 L6C C3 H32C sing N N 247 L6C C4 H4 sing N N 248 L6C N1 H1 sing N N 249 L6C C17 H17 sing N N 250 L6C C13 H13 sing N N 251 L6C C16 H16 sing N N 252 L6C C15 H15 sing N N 253 L6C C14 H14 sing N N 254 L6C C7 H7 sing N N 255 L6C C11 H11 sing N N 256 L6C C8 H8 sing N N 257 L6C C9 H9 sing N N 258 L6C C10 H10 sing N N 259 LEU N CA sing N N 260 LEU N H sing N N 261 LEU N H2 sing N N 262 LEU CA C sing N N 263 LEU CA CB sing N N 264 LEU CA HA sing N N 265 LEU C O doub N N 266 LEU C OXT sing N N 267 LEU CB CG sing N N 268 LEU CB HB2 sing N N 269 LEU CB HB3 sing N N 270 LEU CG CD1 sing N N 271 LEU CG CD2 sing N N 272 LEU CG HG sing N N 273 LEU CD1 HD11 sing N N 274 LEU CD1 HD12 sing N N 275 LEU CD1 HD13 sing N N 276 LEU CD2 HD21 sing N N 277 LEU CD2 HD22 sing N N 278 LEU CD2 HD23 sing N N 279 LEU OXT HXT sing N N 280 LYS N CA sing N N 281 LYS N H sing N N 282 LYS N H2 sing N N 283 LYS CA C sing N N 284 LYS CA CB sing N N 285 LYS CA HA sing N N 286 LYS C O doub N N 287 LYS C OXT sing N N 288 LYS CB CG sing N N 289 LYS CB HB2 sing N N 290 LYS CB HB3 sing N N 291 LYS CG CD sing N N 292 LYS CG HG2 sing N N 293 LYS CG HG3 sing N N 294 LYS CD CE sing N N 295 LYS CD HD2 sing N N 296 LYS CD HD3 sing N N 297 LYS CE NZ sing N N 298 LYS CE HE2 sing N N 299 LYS CE HE3 sing N N 300 LYS NZ HZ1 sing N N 301 LYS NZ HZ2 sing N N 302 LYS NZ HZ3 sing N N 303 LYS OXT HXT sing N N 304 MET N CA sing N N 305 MET N H sing N N 306 MET N H2 sing N N 307 MET CA C sing N N 308 MET CA CB sing N N 309 MET CA HA sing N N 310 MET C O doub N N 311 MET C OXT sing N N 312 MET CB CG sing N N 313 MET CB HB2 sing N N 314 MET CB HB3 sing N N 315 MET CG SD sing N N 316 MET CG HG2 sing N N 317 MET CG HG3 sing N N 318 MET SD CE sing N N 319 MET CE HE1 sing N N 320 MET CE HE2 sing N N 321 MET CE HE3 sing N N 322 MET OXT HXT sing N N 323 PHE N CA sing N N 324 PHE N H sing N N 325 PHE N H2 sing N N 326 PHE CA C sing N N 327 PHE CA CB sing N N 328 PHE CA HA sing N N 329 PHE C O doub N N 330 PHE C OXT sing N N 331 PHE CB CG sing N N 332 PHE CB HB2 sing N N 333 PHE CB HB3 sing N N 334 PHE CG CD1 doub Y N 335 PHE CG CD2 sing Y N 336 PHE CD1 CE1 sing Y N 337 PHE CD1 HD1 sing N N 338 PHE CD2 CE2 doub Y N 339 PHE CD2 HD2 sing N N 340 PHE CE1 CZ doub Y N 341 PHE CE1 HE1 sing N N 342 PHE CE2 CZ sing Y N 343 PHE CE2 HE2 sing N N 344 PHE CZ HZ sing N N 345 PHE OXT HXT sing N N 346 PRO N CA sing N N 347 PRO N CD sing N N 348 PRO N H sing N N 349 PRO CA C sing N N 350 PRO CA CB sing N N 351 PRO CA HA sing N N 352 PRO C O doub N N 353 PRO C OXT sing N N 354 PRO CB CG sing N N 355 PRO CB HB2 sing N N 356 PRO CB HB3 sing N N 357 PRO CG CD sing N N 358 PRO CG HG2 sing N N 359 PRO CG HG3 sing N N 360 PRO CD HD2 sing N N 361 PRO CD HD3 sing N N 362 PRO OXT HXT sing N N 363 SER N CA sing N N 364 SER N H sing N N 365 SER N H2 sing N N 366 SER CA C sing N N 367 SER CA CB sing N N 368 SER CA HA sing N N 369 SER C O doub N N 370 SER C OXT sing N N 371 SER CB OG sing N N 372 SER CB HB2 sing N N 373 SER CB HB3 sing N N 374 SER OG HG sing N N 375 SER OXT HXT sing N N 376 THR N CA sing N N 377 THR N H sing N N 378 THR N H2 sing N N 379 THR CA C sing N N 380 THR CA CB sing N N 381 THR CA HA sing N N 382 THR C O doub N N 383 THR C OXT sing N N 384 THR CB OG1 sing N N 385 THR CB CG2 sing N N 386 THR CB HB sing N N 387 THR OG1 HG1 sing N N 388 THR CG2 HG21 sing N N 389 THR CG2 HG22 sing N N 390 THR CG2 HG23 sing N N 391 THR OXT HXT sing N N 392 TRP N CA sing N N 393 TRP N H sing N N 394 TRP N H2 sing N N 395 TRP CA C sing N N 396 TRP CA CB sing N N 397 TRP CA HA sing N N 398 TRP C O doub N N 399 TRP C OXT sing N N 400 TRP CB CG sing N N 401 TRP CB HB2 sing N N 402 TRP CB HB3 sing N N 403 TRP CG CD1 doub Y N 404 TRP CG CD2 sing Y N 405 TRP CD1 NE1 sing Y N 406 TRP CD1 HD1 sing N N 407 TRP CD2 CE2 doub Y N 408 TRP CD2 CE3 sing Y N 409 TRP NE1 CE2 sing Y N 410 TRP NE1 HE1 sing N N 411 TRP CE2 CZ2 sing Y N 412 TRP CE3 CZ3 doub Y N 413 TRP CE3 HE3 sing N N 414 TRP CZ2 CH2 doub Y N 415 TRP CZ2 HZ2 sing N N 416 TRP CZ3 CH2 sing Y N 417 TRP CZ3 HZ3 sing N N 418 TRP CH2 HH2 sing N N 419 TRP OXT HXT sing N N 420 TYR N CA sing N N 421 TYR N H sing N N 422 TYR N H2 sing N N 423 TYR CA C sing N N 424 TYR CA CB sing N N 425 TYR CA HA sing N N 426 TYR C O doub N N 427 TYR C OXT sing N N 428 TYR CB CG sing N N 429 TYR CB HB2 sing N N 430 TYR CB HB3 sing N N 431 TYR CG CD1 doub Y N 432 TYR CG CD2 sing Y N 433 TYR CD1 CE1 sing Y N 434 TYR CD1 HD1 sing N N 435 TYR CD2 CE2 doub Y N 436 TYR CD2 HD2 sing N N 437 TYR CE1 CZ doub Y N 438 TYR CE1 HE1 sing N N 439 TYR CE2 CZ sing Y N 440 TYR CE2 HE2 sing N N 441 TYR CZ OH sing N N 442 TYR OH HH sing N N 443 TYR OXT HXT sing N N 444 VAL N CA sing N N 445 VAL N H sing N N 446 VAL N H2 sing N N 447 VAL CA C sing N N 448 VAL CA CB sing N N 449 VAL CA HA sing N N 450 VAL C O doub N N 451 VAL C OXT sing N N 452 VAL CB CG1 sing N N 453 VAL CB CG2 sing N N 454 VAL CB HB sing N N 455 VAL CG1 HG11 sing N N 456 VAL CG1 HG12 sing N N 457 VAL CG1 HG13 sing N N 458 VAL CG2 HG21 sing N N 459 VAL CG2 HG22 sing N N 460 VAL CG2 HG23 sing N N 461 VAL OXT HXT sing N N 462 # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-nonylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'phenyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' L6C 3 'nonyl beta-D-glucopyranoside' BNG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2XOV _pdbx_initial_refinement_model.details 'PDB ENTRY 2XOV' #