HEADER HYDROLASE 13-FEB-13 3ZN2 TITLE PROTEIN ENGINEERING OF HALOHYDRIN DEHALOGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOHYDRIN DEHALOGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: MC1061; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PBAD KEYWDS HYDROLASE, EPOXIDE CYANOLYSIS, PROTEIN DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHALLMEY,P.JEKEL,L.TANG,M.MAJERIC-ELENKOV,H.W.HOEFFKEN,B.HAUER, AUTHOR 2 D.B.JANSSEN REVDAT 3 20-DEC-23 3ZN2 1 REMARK LINK REVDAT 2 11-MAR-15 3ZN2 1 JRNL REVDAT 1 05-MAR-14 3ZN2 0 JRNL AUTH M.SCHALLMEY,P.JEKEL,L.TANG,M.MAJERIC ELENKOV,H.W.HOFFKEN, JRNL AUTH 2 B.HAUER,D.B.JANSSEN JRNL TITL A SINGLE POINT MUTATION ENHANCES HYDROXYNITRILE SYNTHESIS BY JRNL TITL 2 HALOHYDRIN DEHALOGENASE. JRNL REF ENZYME.MICROB.TECHNOL. V. 70 50 2015 JRNL REFN ISSN 0141-0229 JRNL PMID 25659632 JRNL DOI 10.1016/J.ENZMICTEC.2014.12.009 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 55208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3049 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4081 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3795 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5550 ; 1.954 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8782 ; 0.937 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 7.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;41.465 ;24.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;15.295 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.429 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4675 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 919 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2051 ; 2.403 ; 2.452 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2047 ; 2.401 ; 2.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2567 ; 3.462 ; 3.667 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2030 ; 2.884 ; 2.794 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. THE BIOLOGICAL ACTIVE REMARK 3 MOLECULE IS A TETRAMER REMARK 4 REMARK 4 3ZN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 1.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PX0 REMARK 200 REMARK 200 REMARK: NO REMARKS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.21500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.66500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.82250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.66500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.60750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.82250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.66500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.60750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.21500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 103.33000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 103.33000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.21500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 GLU B 254 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2017 O HOH A 2022 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2104 O HOH A 2104 8665 2.18 REMARK 500 OD1 ASN A 167 O HOH B 2110 8665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 80 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP B 230 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 230 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 52.01 33.33 REMARK 500 PHE A 12 -119.94 46.55 REMARK 500 ASP A 32 144.59 -171.27 REMARK 500 GLN A 105 -51.84 -121.95 REMARK 500 THR A 131 -117.38 -115.02 REMARK 500 GLU A 141 34.40 74.80 REMARK 500 GLU A 181 -119.62 66.12 REMARK 500 GLU A 181 -117.32 58.03 REMARK 500 CYS A 229 55.68 -150.42 REMARK 500 ASN B 8 47.35 37.22 REMARK 500 PHE B 12 -115.10 53.90 REMARK 500 PRO B 59 -70.16 -50.41 REMARK 500 PHE B 82 145.00 -170.90 REMARK 500 THR B 131 -120.15 -107.33 REMARK 500 GLU B 181 -105.71 61.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG5 B 1254 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1258 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 132 OG REMARK 620 2 TYR A 145 OH 85.5 REMARK 620 3 HOH A2123 O 89.6 93.5 REMARK 620 4 HOH A2124 O 138.1 109.4 126.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1259 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 141 OE2 REMARK 620 2 HOH A2110 O 129.6 REMARK 620 3 HOH A2174 O 106.5 112.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1256 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 7 OG1 REMARK 620 2 SER B 78 OG 102.4 REMARK 620 3 ASP B 80 OD1 125.1 85.6 REMARK 620 4 HOH B2059 O 85.3 155.1 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1255 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 132 OG REMARK 620 2 TYR B 145 OH 88.3 REMARK 620 3 HOH B2087 O 85.3 101.2 REMARK 620 4 HOH B2123 O 122.8 103.3 142.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG5 B 1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1256 DBREF 3ZN2 A 1 254 UNP Q93D82 Q93D82_RHIRD 1 254 DBREF 3ZN2 B 1 254 UNP Q93D82 Q93D82_RHIRD 1 254 SEQADV 3ZN2 ALA A 134 UNP Q93D82 THR 134 ENGINEERED MUTATION SEQADV 3ZN2 SER A 153 UNP Q93D82 CYS 153 ENGINEERED MUTATION SEQADV 3ZN2 PHE A 249 UNP Q93D82 TRP 249 ENGINEERED MUTATION SEQADV 3ZN2 ALA B 134 UNP Q93D82 THR 134 ENGINEERED MUTATION SEQADV 3ZN2 SER B 153 UNP Q93D82 CYS 153 ENGINEERED MUTATION SEQADV 3ZN2 PHE B 249 UNP Q93D82 TRP 249 ENGINEERED MUTATION SEQRES 1 A 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 A 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 A 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 A 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 A 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 A 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 A 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 A 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 A 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 A 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 A 254 THR SER ALA ALA PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 A 254 THR TYR THR SER ALA ARG ALA GLY ALA SER THR LEU ALA SEQRES 13 A 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 A 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 A 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 A 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 A 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 A 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 A 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 A 254 ARG PHE PRO GLY MET PRO GLU SEQRES 1 B 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 B 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 B 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 B 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 B 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 B 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 B 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 B 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 B 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 B 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 B 254 THR SER ALA ALA PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 B 254 THR TYR THR SER ALA ARG ALA GLY ALA SER THR LEU ALA SEQRES 13 B 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 B 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 B 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 B 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 B 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 B 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 B 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 B 254 ARG PHE PRO GLY MET PRO GLU HET ACT A1255 4 HET ACT A1256 4 HET ACT A1257 4 HET NA A1258 1 HET NA A1259 1 HET PG5 B1254 10 HET NA B1255 1 HET K B1256 1 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM PG5 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE HETNAM K POTASSIUM ION FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 NA 3(NA 1+) FORMUL 8 PG5 C8 H18 O4 FORMUL 10 K K 1+ FORMUL 11 HOH *297(H2 O) HELIX 1 1 GLY A 13 GLY A 25 1 13 HELIX 2 2 ASP A 32 LYS A 36 5 5 HELIX 3 3 GLN A 37 TYR A 48 1 12 HELIX 4 4 GLU A 58 GLY A 71 1 14 HELIX 5 5 PRO A 88 TYR A 92 5 5 HELIX 6 6 ALA A 93 GLN A 105 1 13 HELIX 7 7 GLN A 105 LYS A 123 1 19 HELIX 8 8 ALA A 133 GLY A 137 5 5 HELIX 9 9 LEU A 142 GLY A 164 1 23 HELIX 10 10 GLU A 165 ASN A 167 5 3 HELIX 11 11 PRO A 188 LYS A 193 1 6 HELIX 12 12 ASN A 195 THR A 206 1 12 HELIX 13 13 THR A 213 SER A 226 1 14 HELIX 14 14 CYS A 229 THR A 233 5 5 HELIX 15 15 GLY B 13 ALA B 24 1 12 HELIX 16 16 GLU B 33 LYS B 36 5 4 HELIX 17 17 GLN B 37 TYR B 48 1 12 HELIX 18 18 GLU B 58 GLY B 71 1 14 HELIX 19 19 PRO B 88 TYR B 92 5 5 HELIX 20 20 ALA B 93 GLN B 105 1 13 HELIX 21 21 GLN B 105 LYS B 123 1 19 HELIX 22 22 ALA B 133 GLY B 137 5 5 HELIX 23 23 LEU B 142 GLY B 164 1 23 HELIX 24 24 GLU B 165 ASN B 167 5 3 HELIX 25 25 PRO B 188 LYS B 193 1 6 HELIX 26 26 ASN B 195 THR B 206 1 12 HELIX 27 27 THR B 213 SER B 226 1 14 HELIX 28 28 CYS B 229 THR B 233 5 5 SHEET 1 AA 7 LEU A 51 PRO A 53 0 SHEET 2 AA 7 THR A 27 CYS A 30 1 O VAL A 28 N LYS A 52 SHEET 3 AA 7 THR A 3 VAL A 6 1 O ALA A 4 N ALA A 29 SHEET 4 AA 7 VAL A 75 ASN A 79 1 O VAL A 75 N ILE A 5 SHEET 5 AA 7 HIS A 126 ILE A 130 1 O HIS A 126 N LEU A 76 SHEET 6 AA 7 VAL A 170 PRO A 175 1 O PHE A 171 N PHE A 129 SHEET 7 AA 7 VAL A 236 LEU A 239 1 O PHE A 237 N GLY A 174 SHEET 1 BA 7 LEU B 51 PRO B 53 0 SHEET 2 BA 7 THR B 27 CYS B 30 1 O VAL B 28 N LYS B 52 SHEET 3 BA 7 THR B 3 VAL B 6 1 O ALA B 4 N ALA B 29 SHEET 4 BA 7 VAL B 75 ASN B 79 1 O VAL B 75 N ILE B 5 SHEET 5 BA 7 HIS B 126 ILE B 130 1 O HIS B 126 N LEU B 76 SHEET 6 BA 7 VAL B 170 PRO B 175 1 O PHE B 171 N PHE B 129 SHEET 7 BA 7 VAL B 236 LEU B 239 1 O PHE B 237 N GLY B 174 LINK OG SER A 132 NA NA A1258 1555 1555 3.08 LINK OE2 GLU A 141 NA NA A1259 1555 1555 2.41 LINK OH TYR A 145 NA NA A1258 1555 1555 2.99 LINK NA NA A1258 O HOH A2123 1555 1555 2.53 LINK NA NA A1258 O HOH A2124 1555 1555 2.67 LINK NA NA A1259 O HOH A2110 1555 1555 2.35 LINK NA NA A1259 O HOH A2174 1555 1555 3.14 LINK OG1 THR B 7 K K B1256 1555 1555 2.92 LINK OG SER B 78 K K B1256 1555 1555 2.75 LINK OD1 ASP B 80 K K B1256 1555 1555 2.46 LINK OG SER B 132 NA NA B1255 1555 1555 2.99 LINK OH TYR B 145 NA NA B1255 1555 1555 2.98 LINK NA NA B1255 O HOH B2087 1555 1555 2.73 LINK NA NA B1255 O HOH B2123 1555 1555 1.91 LINK K K B1256 O HOH B2059 1555 1555 2.99 CISPEP 1 TYR A 185 PHE A 186 0 -1.76 CISPEP 2 GLU A 190 PRO A 191 0 7.85 CISPEP 3 PHE A 243 PRO A 244 0 -5.23 CISPEP 4 TYR B 185 PHE B 186 0 5.16 CISPEP 5 GLU B 190 PRO B 191 0 5.39 CISPEP 6 PHE B 243 PRO B 244 0 6.00 SITE 1 AC1 5 GLU A 58 PRO A 59 ALA A 60 GLU A 61 SITE 2 AC1 5 HOH A2172 SITE 1 AC2 3 GLU A 102 ARG A 107 HOH A2084 SITE 1 AC3 5 HIS A 179 GLU A 181 THR A 213 GLN A 214 SITE 2 AC3 5 LYS A 215 SITE 1 AC4 4 SER A 132 TYR A 145 HOH A2123 HOH A2124 SITE 1 AC5 2 GLU A 141 HOH A2110 SITE 1 AC6 4 SER B 132 TYR B 145 HOH B2087 HOH B2123 SITE 1 AC7 6 ALA B 93 VAL B 94 GLU B 95 ARG B 98 SITE 2 AC7 6 HOH B2050 HOH B2122 SITE 1 AC8 6 THR B 7 SER B 78 ASP B 80 ARG B 107 SITE 2 AC8 6 LEU B 111 HOH B2059 CRYST1 103.330 103.330 118.430 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008444 0.00000 MTRIX1 1 -0.626600 0.372000 0.684800 100.70000 1 MTRIX2 1 0.368700 -0.632700 0.681000 -11.17000 1 MTRIX3 1 0.687000 0.679200 0.259300 -48.70000 1