data_3ZO0 # _entry.id 3ZO0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZO0 PDBE EBI-55894 WWPDB D_1290055894 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2013-05-22 _pdbx_database_PDB_obs_spr.pdb_id 3ZO0 _pdbx_database_PDB_obs_spr.replace_pdb_id 2VOL _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZO0 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-02-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'James, L.C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Trim21 is an Igg Receptor that is Structurally, Thermodynamically, and Kinetically Conserved.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 105 _citation.page_first 6045 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18420815 _citation.pdbx_database_id_DOI 10.1073/PNAS.0800159105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Keeble, A.H.' 1 ? primary 'Khan, Z.' 2 ? primary 'Forster, A.' 3 ? primary 'James, L.C.' 4 ? # _cell.entry_id 3ZO0 _cell.length_a 45.458 _cell.length_b 186.185 _cell.length_c 124.875 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZO0 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'IG GAMMA-2A CHAIN C REGION, A ALLELE' 23849.016 1 ? ? 'FC, RESIDUES 120-327' ? 2 polymer man 'E3 UBIQUITIN-PROTEIN LIGASE TRIM21' 20788.518 1 6.3.2.- ? 'RESIDUES 291-470' ? 3 branched man ;beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1114.016 1 ? ? ? ? 4 non-polymer man alpha-D-mannopyranose 180.156 1 ? ? ? ? 5 non-polymer man alpha-L-fucopyranose 164.156 1 ? ? ? ? 6 water nat water 18.015 189 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'IGG2A, IMMUNOGLOBULIN HEAVY CHAIN GAMMA POLYPEPTIDE' 2 ;TRIM21,52 KDA RO PROTEIN, 52 KDA RIBONUCLEOPROTEIN AUTOANTIGEN RO/SS-A, RO(SS-A), SJOEGREN SYNDROME TYPE A ANTIGEN, SS-A, TRIPARTITE MOTIF-CONTAINING PROTEIN 21 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG KEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEP VLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHTTKSFSRS ; ;GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG KEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEP VLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHTTKSFSRS ; A ? 2 'polypeptide(L)' no no ;HMVHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGVCRDSVQ RKGQFSLSPENGFWTIWLWQKSYEAGTSPQTTLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFAGPLRPF FNVGFNYSGGNAAPLKLCPLKM ; ;HMVHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGVCRDSVQ RKGQFSLSPENGFWTIWLWQKSYEAGTSPQTTLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFAGPLRPF FNVGFNYSGGNAAPLKLCPLKM ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 SER n 1 4 VAL n 1 5 PHE n 1 6 ILE n 1 7 PHE n 1 8 PRO n 1 9 PRO n 1 10 LYS n 1 11 ILE n 1 12 LYS n 1 13 ASP n 1 14 VAL n 1 15 LEU n 1 16 MET n 1 17 ILE n 1 18 SER n 1 19 LEU n 1 20 SER n 1 21 PRO n 1 22 ILE n 1 23 VAL n 1 24 THR n 1 25 CYS n 1 26 VAL n 1 27 VAL n 1 28 VAL n 1 29 ASP n 1 30 VAL n 1 31 SER n 1 32 GLU n 1 33 ASP n 1 34 ASP n 1 35 PRO n 1 36 ASP n 1 37 VAL n 1 38 GLN n 1 39 ILE n 1 40 SER n 1 41 TRP n 1 42 PHE n 1 43 VAL n 1 44 ASN n 1 45 ASN n 1 46 VAL n 1 47 GLU n 1 48 VAL n 1 49 HIS n 1 50 THR n 1 51 ALA n 1 52 GLN n 1 53 THR n 1 54 GLN n 1 55 THR n 1 56 HIS n 1 57 ARG n 1 58 GLU n 1 59 ASP n 1 60 TYR n 1 61 ASN n 1 62 SER n 1 63 THR n 1 64 LEU n 1 65 ARG n 1 66 VAL n 1 67 VAL n 1 68 SER n 1 69 ALA n 1 70 LEU n 1 71 PRO n 1 72 ILE n 1 73 GLN n 1 74 HIS n 1 75 GLN n 1 76 ASP n 1 77 TRP n 1 78 MET n 1 79 SER n 1 80 GLY n 1 81 LYS n 1 82 GLU n 1 83 PHE n 1 84 LYS n 1 85 CYS n 1 86 LYS n 1 87 VAL n 1 88 ASN n 1 89 ASN n 1 90 LYS n 1 91 ASP n 1 92 LEU n 1 93 PRO n 1 94 ALA n 1 95 PRO n 1 96 ILE n 1 97 GLU n 1 98 ARG n 1 99 THR n 1 100 ILE n 1 101 SER n 1 102 LYS n 1 103 PRO n 1 104 LYS n 1 105 GLY n 1 106 SER n 1 107 VAL n 1 108 ARG n 1 109 ALA n 1 110 PRO n 1 111 GLN n 1 112 VAL n 1 113 TYR n 1 114 VAL n 1 115 LEU n 1 116 PRO n 1 117 PRO n 1 118 PRO n 1 119 GLU n 1 120 GLU n 1 121 GLU n 1 122 MET n 1 123 THR n 1 124 LYS n 1 125 LYS n 1 126 GLN n 1 127 VAL n 1 128 THR n 1 129 LEU n 1 130 THR n 1 131 CYS n 1 132 MET n 1 133 VAL n 1 134 THR n 1 135 ASP n 1 136 PHE n 1 137 MET n 1 138 PRO n 1 139 GLU n 1 140 ASP n 1 141 ILE n 1 142 TYR n 1 143 VAL n 1 144 GLU n 1 145 TRP n 1 146 THR n 1 147 ASN n 1 148 ASN n 1 149 GLY n 1 150 LYS n 1 151 THR n 1 152 GLU n 1 153 LEU n 1 154 ASN n 1 155 TYR n 1 156 LYS n 1 157 ASN n 1 158 THR n 1 159 GLU n 1 160 PRO n 1 161 VAL n 1 162 LEU n 1 163 ASP n 1 164 SER n 1 165 ASP n 1 166 GLY n 1 167 SER n 1 168 TYR n 1 169 PHE n 1 170 MET n 1 171 TYR n 1 172 SER n 1 173 LYS n 1 174 LEU n 1 175 ARG n 1 176 VAL n 1 177 GLU n 1 178 LYS n 1 179 LYS n 1 180 ASN n 1 181 TRP n 1 182 VAL n 1 183 GLU n 1 184 ARG n 1 185 ASN n 1 186 SER n 1 187 TYR n 1 188 SER n 1 189 CYS n 1 190 SER n 1 191 VAL n 1 192 VAL n 1 193 HIS n 1 194 GLU n 1 195 GLY n 1 196 LEU n 1 197 HIS n 1 198 ASN n 1 199 HIS n 1 200 HIS n 1 201 THR n 1 202 THR n 1 203 LYS n 1 204 SER n 1 205 PHE n 1 206 SER n 1 207 ARG n 1 208 SER n 2 1 HIS n 2 2 MET n 2 3 VAL n 2 4 HIS n 2 5 ILE n 2 6 THR n 2 7 LEU n 2 8 ASP n 2 9 ARG n 2 10 ASN n 2 11 THR n 2 12 ALA n 2 13 ASN n 2 14 SER n 2 15 TRP n 2 16 LEU n 2 17 ILE n 2 18 ILE n 2 19 SER n 2 20 LYS n 2 21 ASP n 2 22 ARG n 2 23 ARG n 2 24 GLN n 2 25 VAL n 2 26 ARG n 2 27 MET n 2 28 GLY n 2 29 ASP n 2 30 THR n 2 31 HIS n 2 32 GLN n 2 33 ASN n 2 34 VAL n 2 35 SER n 2 36 ASP n 2 37 ASN n 2 38 LYS n 2 39 GLU n 2 40 ARG n 2 41 PHE n 2 42 SER n 2 43 ASN n 2 44 TYR n 2 45 PRO n 2 46 MET n 2 47 VAL n 2 48 LEU n 2 49 GLY n 2 50 ALA n 2 51 GLN n 2 52 ARG n 2 53 PHE n 2 54 SER n 2 55 SER n 2 56 GLY n 2 57 LYS n 2 58 MET n 2 59 TYR n 2 60 TRP n 2 61 GLU n 2 62 VAL n 2 63 ASP n 2 64 VAL n 2 65 THR n 2 66 GLN n 2 67 LYS n 2 68 GLU n 2 69 ALA n 2 70 TRP n 2 71 ASP n 2 72 LEU n 2 73 GLY n 2 74 VAL n 2 75 CYS n 2 76 ARG n 2 77 ASP n 2 78 SER n 2 79 VAL n 2 80 GLN n 2 81 ARG n 2 82 LYS n 2 83 GLY n 2 84 GLN n 2 85 PHE n 2 86 SER n 2 87 LEU n 2 88 SER n 2 89 PRO n 2 90 GLU n 2 91 ASN n 2 92 GLY n 2 93 PHE n 2 94 TRP n 2 95 THR n 2 96 ILE n 2 97 TRP n 2 98 LEU n 2 99 TRP n 2 100 GLN n 2 101 LYS n 2 102 SER n 2 103 TYR n 2 104 GLU n 2 105 ALA n 2 106 GLY n 2 107 THR n 2 108 SER n 2 109 PRO n 2 110 GLN n 2 111 THR n 2 112 THR n 2 113 LEU n 2 114 HIS n 2 115 ILE n 2 116 GLN n 2 117 VAL n 2 118 PRO n 2 119 PRO n 2 120 CYS n 2 121 GLN n 2 122 ILE n 2 123 GLY n 2 124 ILE n 2 125 PHE n 2 126 VAL n 2 127 ASP n 2 128 TYR n 2 129 GLU n 2 130 ALA n 2 131 GLY n 2 132 VAL n 2 133 VAL n 2 134 SER n 2 135 PHE n 2 136 TYR n 2 137 ASN n 2 138 ILE n 2 139 THR n 2 140 ASP n 2 141 HIS n 2 142 GLY n 2 143 SER n 2 144 LEU n 2 145 ILE n 2 146 TYR n 2 147 THR n 2 148 PHE n 2 149 SER n 2 150 GLU n 2 151 CYS n 2 152 VAL n 2 153 PHE n 2 154 ALA n 2 155 GLY n 2 156 PRO n 2 157 LEU n 2 158 ARG n 2 159 PRO n 2 160 PHE n 2 161 PHE n 2 162 ASN n 2 163 VAL n 2 164 GLY n 2 165 PHE n 2 166 ASN n 2 167 TYR n 2 168 SER n 2 169 GLY n 2 170 GLY n 2 171 ASN n 2 172 ALA n 2 173 ALA n 2 174 PRO n 2 175 LEU n 2 176 LYS n 2 177 LEU n 2 178 CYS n 2 179 PRO n 2 180 LEU n 2 181 LYS n 2 182 MET n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'HOUSE MOUSE' _entity_src_nat.pdbx_organism_scientific 'MUS MUSCULUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 10090 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP GCAA_MOUSE 1 ? ? P01863 ? 2 UNP RO52_MOUSE 2 ? ? Q62191 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ZO0 A 1 ? 208 ? P01863 120 ? 327 ? 237 444 2 2 3ZO0 B 3 ? 182 ? Q62191 291 ? 470 ? 9 188 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZO0 SER A 208 ? UNP P01863 THR 327 conflict 444 1 2 3ZO0 HIS B 1 ? UNP Q62191 ? ? 'expression tag' 7 2 2 3ZO0 MET B 2 ? UNP Q62191 ? ? 'expression tag' 8 3 2 3ZO0 LYS B 101 ? UNP Q62191 ASP 389 conflict 107 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZO0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.44 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-3' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-3 _diffrn_source.pdbx_wavelength 0.97 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZO0 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 36717 _reflns.number_all ? _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZO0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 34168 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.15 _refine.ls_d_res_high 1.99 _refine.ls_percent_reflns_obs 97.94 _refine.ls_R_factor_obs 0.18474 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18132 _refine.ls_R_factor_R_free 0.25251 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1798 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.921 _refine.B_iso_mean 36.524 _refine.aniso_B[1][1] -0.14 _refine.aniso_B[2][2] 0.17 _refine.aniso_B[3][3] -0.03 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.364 _refine.pdbx_overall_ESU_R_Free 0.163 _refine.overall_SU_ML 0.118 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.680 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3120 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 96 _refine_hist.number_atoms_solvent 189 _refine_hist.number_atoms_total 3405 _refine_hist.d_res_high 1.99 _refine_hist.d_res_low 44.15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.019 ? 3311 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 3035 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.236 1.969 ? 4516 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.046 3.001 ? 6980 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.864 5.000 ? 386 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.914 24.342 ? 152 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.575 15.000 ? 533 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.779 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.192 0.200 ? 511 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.021 ? 3640 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.009 0.020 ? 760 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 5.643 3.315 ? 1550 'X-RAY DIFFRACTION' ? r_mcbond_other 5.640 3.312 ? 1549 'X-RAY DIFFRACTION' ? r_mcangle_it 6.321 4.954 ? 1934 'X-RAY DIFFRACTION' ? r_mcangle_other 6.337 4.959 ? 1935 'X-RAY DIFFRACTION' ? r_scbond_it 6.347 3.840 ? 1761 'X-RAY DIFFRACTION' ? r_scbond_other 6.346 3.841 ? 1762 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 7.123 5.529 ? 2583 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.493 28.596 ? 3868 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.477 28.448 ? 3819 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 11.758 3.000 ? 6346 'X-RAY DIFFRACTION' ? r_sphericity_free 29.817 5.000 ? 63 'X-RAY DIFFRACTION' ? r_sphericity_bonded 14.664 5.000 ? 6377 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.994 _refine_ls_shell.d_res_low 2.046 _refine_ls_shell.number_reflns_R_work 2370 _refine_ls_shell.R_factor_R_work 0.215 _refine_ls_shell.percent_reflns_obs 94.12 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 143 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3ZO0 _struct.title 'Mouse IgG2a in complex with mouse TRIM21 PRYSPRY' _struct.pdbx_descriptor 'IG GAMMA-2A CHAIN C REGION, A ALLELE, E3 UBIQUITIN-PROTEIN LIGASE TRIM21 (E.C.6.3.2.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZO0 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM/LIGASE' _struct_keywords.text 'IMMUNE SYSTEM-LIGASE COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 10 ? MET A 16 ? LYS A 246 MET A 252 1 ? 7 HELX_P HELX_P2 2 GLN A 73 ? SER A 79 ? GLN A 309 SER A 315 1 ? 7 HELX_P HELX_P3 3 PRO A 118 ? THR A 123 ? PRO A 354 THR A 359 5 ? 6 HELX_P HELX_P4 4 LYS A 178 ? GLU A 183 ? LYS A 414 GLU A 419 1 ? 6 HELX_P HELX_P5 5 LEU A 196 ? ASN A 198 ? LEU A 432 ASN A 434 5 ? 3 HELX_P HELX_P6 6 ASP B 8 ? ALA B 12 ? ASP B 14 ALA B 18 5 ? 5 HELX_P HELX_P7 7 SER B 88 ? ASN B 91 ? SER B 94 ASN B 97 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 85 SG ? ? A CYS 261 A CYS 321 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf2 disulf ? ? A CYS 131 SG ? ? ? 1_555 A CYS 189 SG ? ? A CYS 367 A CYS 425 1_555 ? ? ? ? ? ? ? 2.004 ? ? covale1 covale one ? A ASN 61 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 297 C NAG 1 1_555 ? ? ? ? ? ? ? 1.259 ? N-Glycosylation covale2 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.409 ? ? covale3 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale4 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale5 covale both ? C MAN . O2 ? ? ? 1_555 C NAG . C1 ? ? C MAN 4 C NAG 5 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale6 covale both ? C NAG . O4 ? ? ? 1_555 C GAL . C1 ? ? C NAG 5 C GAL 6 1_555 ? ? ? ? ? ? ? 1.428 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MET 137 A . ? MET 373 A PRO 138 A ? PRO 374 A 1 -6.50 2 SER 108 B . ? SER 114 B PRO 109 B ? PRO 115 B 1 -6.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? AC ? 4 ? AD ? 4 ? AE ? 2 ? AF ? 4 ? BA ? 7 ? BB ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AD 3 4 ? anti-parallel AE 1 2 ? parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AF 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel BA 5 6 ? anti-parallel BA 6 7 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? anti-parallel BB 4 5 ? anti-parallel BB 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 SER A 3 ? PHE A 7 ? SER A 239 PHE A 243 AA 2 ILE A 22 ? VAL A 30 ? ILE A 258 VAL A 266 AA 3 THR A 63 ? PRO A 71 ? THR A 299 PRO A 307 AA 4 GLN A 52 ? ASP A 59 ? GLN A 288 ASP A 295 AB 1 VAL A 46 ? VAL A 48 ? VAL A 282 VAL A 284 AB 2 GLN A 38 ? VAL A 43 ? GLN A 274 VAL A 279 AB 3 PHE A 83 ? ASN A 88 ? PHE A 319 ASN A 324 AB 4 ILE A 96 ? ILE A 100 ? ILE A 332 ILE A 336 AC 1 GLN A 111 ? LEU A 115 ? GLN A 347 LEU A 351 AC 2 GLN A 126 ? PHE A 136 ? GLN A 362 PHE A 372 AC 3 TYR A 168 ? GLU A 177 ? TYR A 404 GLU A 413 AC 4 VAL A 161 ? LEU A 162 ? VAL A 397 LEU A 398 AD 1 GLN A 111 ? LEU A 115 ? GLN A 347 LEU A 351 AD 2 GLN A 126 ? PHE A 136 ? GLN A 362 PHE A 372 AD 3 TYR A 168 ? GLU A 177 ? TYR A 404 GLU A 413 AD 4 TYR A 155 ? ASN A 157 ? TYR A 391 ASN A 393 AE 1 VAL A 161 ? LEU A 162 ? VAL A 397 LEU A 398 AE 2 TYR A 168 ? GLU A 177 ? TYR A 404 GLU A 413 AF 1 LYS A 150 ? THR A 151 ? LYS A 386 THR A 387 AF 2 TYR A 142 ? ASN A 147 ? TYR A 378 ASN A 383 AF 3 TYR A 187 ? VAL A 192 ? TYR A 423 VAL A 428 AF 4 HIS A 200 ? PHE A 205 ? HIS A 436 PHE A 441 BA 1 LEU B 16 ? ILE B 18 ? LEU B 22 ILE B 24 BA 2 GLN B 24 ? MET B 27 ? GLN B 30 MET B 33 BA 3 LEU B 175 ? LEU B 177 ? LEU B 181 LEU B 183 BA 4 LYS B 57 ? ASP B 63 ? LYS B 63 ASP B 69 BA 5 GLN B 121 ? ASP B 127 ? GLN B 127 ASP B 133 BA 6 VAL B 132 ? ASN B 137 ? VAL B 138 ASN B 143 BA 7 SER B 143 ? PHE B 148 ? SER B 149 PHE B 154 BB 1 MET B 46 ? LEU B 48 ? MET B 52 LEU B 54 BB 2 LEU B 157 ? ASN B 162 ? LEU B 163 ASN B 168 BB 3 TRP B 70 ? ARG B 76 ? TRP B 76 ARG B 82 BB 4 PHE B 93 ? TRP B 99 ? PHE B 99 TRP B 105 BB 5 SER B 102 ? ALA B 105 ? SER B 108 ALA B 111 BB 6 THR B 111 ? THR B 112 ? THR B 117 THR B 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 7 ? N PHE A 243 O THR A 24 ? O THR A 260 AA 2 3 N VAL A 30 ? N VAL A 266 O LEU A 64 ? O LEU A 300 AA 3 4 N ALA A 69 ? N ALA A 305 O GLN A 52 ? O GLN A 288 AB 1 2 N VAL A 48 ? N VAL A 284 O TRP A 41 ? O TRP A 277 AB 2 3 N PHE A 42 ? N PHE A 278 O LYS A 84 ? O LYS A 320 AB 3 4 N VAL A 87 ? N VAL A 323 O ILE A 96 ? O ILE A 332 AC 1 2 N LEU A 115 ? N LEU A 351 O THR A 130 ? O THR A 366 AC 2 3 N PHE A 136 ? N PHE A 372 O TYR A 168 ? O TYR A 404 AC 3 4 N PHE A 169 ? N PHE A 405 O VAL A 161 ? O VAL A 397 AD 1 2 N LEU A 115 ? N LEU A 351 O THR A 130 ? O THR A 366 AD 2 3 N PHE A 136 ? N PHE A 372 O TYR A 168 ? O TYR A 404 AD 3 4 N LYS A 173 ? N LYS A 409 O LYS A 156 ? O LYS A 392 AE 1 2 N VAL A 161 ? N VAL A 397 O PHE A 169 ? O PHE A 405 AF 1 2 N LYS A 150 ? N LYS A 386 O ASN A 147 ? O ASN A 383 AF 2 3 N THR A 146 ? N THR A 382 O SER A 188 ? O SER A 424 AF 3 4 N VAL A 191 ? N VAL A 427 O THR A 201 ? O THR A 437 BA 1 2 N ILE B 17 ? N ILE B 23 O ARG B 26 ? O ARG B 32 BA 2 3 N VAL B 25 ? N VAL B 31 O LEU B 175 ? O LEU B 181 BA 3 4 N LYS B 176 ? N LYS B 182 O ASP B 63 ? O ASP B 69 BA 4 5 N VAL B 62 ? N VAL B 68 O ILE B 122 ? O ILE B 128 BA 5 6 N ASP B 127 ? N ASP B 133 O VAL B 132 ? O VAL B 138 BA 6 7 N ASN B 137 ? N ASN B 143 O SER B 143 ? O SER B 149 BB 1 2 N VAL B 47 ? N VAL B 53 O PHE B 161 ? O PHE B 167 BB 2 3 N ASN B 162 ? N ASN B 168 O ASP B 71 ? O ASP B 77 BB 3 4 N VAL B 74 ? N VAL B 80 O TRP B 94 ? O TRP B 100 BB 4 5 N TRP B 99 ? N TRP B 105 O SER B 102 ? O SER B 108 BB 5 6 N ALA B 105 ? N ALA B 111 O THR B 111 ? O THR B 117 # _database_PDB_matrix.entry_id 3ZO0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZO0 _atom_sites.fract_transf_matrix[1][1] 0.021998 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005371 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008008 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG C 1 HAS WRONG CHIRALITY AT ATOM C1' 2 'NAG A 1444 IS PLANAR AT ATOM C1 MAN A 1449 IS NOT LINKED TO SACCHARIDE CHAIN FUC A 1451 IS NOT LINKED TO SACCHARIDE CHAIN' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 237 237 GLY GLY A . n A 1 2 PRO 2 238 238 PRO PRO A . n A 1 3 SER 3 239 239 SER SER A . n A 1 4 VAL 4 240 240 VAL VAL A . n A 1 5 PHE 5 241 241 PHE PHE A . n A 1 6 ILE 6 242 242 ILE ILE A . n A 1 7 PHE 7 243 243 PHE PHE A . n A 1 8 PRO 8 244 244 PRO PRO A . n A 1 9 PRO 9 245 245 PRO PRO A . n A 1 10 LYS 10 246 246 LYS LYS A . n A 1 11 ILE 11 247 247 ILE ILE A . n A 1 12 LYS 12 248 248 LYS LYS A . n A 1 13 ASP 13 249 249 ASP ASP A . n A 1 14 VAL 14 250 250 VAL VAL A . n A 1 15 LEU 15 251 251 LEU LEU A . n A 1 16 MET 16 252 252 MET MET A . n A 1 17 ILE 17 253 253 ILE ILE A . n A 1 18 SER 18 254 254 SER SER A . n A 1 19 LEU 19 255 255 LEU LEU A . n A 1 20 SER 20 256 256 SER SER A . n A 1 21 PRO 21 257 257 PRO PRO A . n A 1 22 ILE 22 258 258 ILE ILE A . n A 1 23 VAL 23 259 259 VAL VAL A . n A 1 24 THR 24 260 260 THR THR A . n A 1 25 CYS 25 261 261 CYS CYS A . n A 1 26 VAL 26 262 262 VAL VAL A . n A 1 27 VAL 27 263 263 VAL VAL A . n A 1 28 VAL 28 264 264 VAL VAL A . n A 1 29 ASP 29 265 265 ASP ASP A . n A 1 30 VAL 30 266 266 VAL VAL A . n A 1 31 SER 31 267 267 SER SER A . n A 1 32 GLU 32 268 268 GLU GLU A . n A 1 33 ASP 33 269 269 ASP ASP A . n A 1 34 ASP 34 270 270 ASP ASP A . n A 1 35 PRO 35 271 271 PRO PRO A . n A 1 36 ASP 36 272 272 ASP ASP A . n A 1 37 VAL 37 273 273 VAL VAL A . n A 1 38 GLN 38 274 274 GLN GLN A . n A 1 39 ILE 39 275 275 ILE ILE A . n A 1 40 SER 40 276 276 SER SER A . n A 1 41 TRP 41 277 277 TRP TRP A . n A 1 42 PHE 42 278 278 PHE PHE A . n A 1 43 VAL 43 279 279 VAL VAL A . n A 1 44 ASN 44 280 280 ASN ASN A . n A 1 45 ASN 45 281 281 ASN ASN A . n A 1 46 VAL 46 282 282 VAL VAL A . n A 1 47 GLU 47 283 283 GLU GLU A . n A 1 48 VAL 48 284 284 VAL VAL A . n A 1 49 HIS 49 285 285 HIS HIS A . n A 1 50 THR 50 286 286 THR THR A . n A 1 51 ALA 51 287 287 ALA ALA A . n A 1 52 GLN 52 288 288 GLN GLN A . n A 1 53 THR 53 289 289 THR THR A . n A 1 54 GLN 54 290 290 GLN GLN A . n A 1 55 THR 55 291 291 THR THR A . n A 1 56 HIS 56 292 292 HIS HIS A . n A 1 57 ARG 57 293 293 ARG ARG A . n A 1 58 GLU 58 294 294 GLU GLU A . n A 1 59 ASP 59 295 295 ASP ASP A . n A 1 60 TYR 60 296 296 TYR TYR A . n A 1 61 ASN 61 297 297 ASN ASN A . n A 1 62 SER 62 298 298 SER SER A . n A 1 63 THR 63 299 299 THR THR A . n A 1 64 LEU 64 300 300 LEU LEU A . n A 1 65 ARG 65 301 301 ARG ARG A . n A 1 66 VAL 66 302 302 VAL VAL A . n A 1 67 VAL 67 303 303 VAL VAL A . n A 1 68 SER 68 304 304 SER SER A . n A 1 69 ALA 69 305 305 ALA ALA A . n A 1 70 LEU 70 306 306 LEU LEU A . n A 1 71 PRO 71 307 307 PRO PRO A . n A 1 72 ILE 72 308 308 ILE ILE A . n A 1 73 GLN 73 309 309 GLN GLN A . n A 1 74 HIS 74 310 310 HIS HIS A . n A 1 75 GLN 75 311 311 GLN GLN A . n A 1 76 ASP 76 312 312 ASP ASP A . n A 1 77 TRP 77 313 313 TRP TRP A . n A 1 78 MET 78 314 314 MET MET A . n A 1 79 SER 79 315 315 SER SER A . n A 1 80 GLY 80 316 316 GLY GLY A . n A 1 81 LYS 81 317 317 LYS LYS A . n A 1 82 GLU 82 318 318 GLU GLU A . n A 1 83 PHE 83 319 319 PHE PHE A . n A 1 84 LYS 84 320 320 LYS LYS A . n A 1 85 CYS 85 321 321 CYS CYS A . n A 1 86 LYS 86 322 322 LYS LYS A . n A 1 87 VAL 87 323 323 VAL VAL A . n A 1 88 ASN 88 324 324 ASN ASN A . n A 1 89 ASN 89 325 325 ASN ASN A . n A 1 90 LYS 90 326 326 LYS LYS A . n A 1 91 ASP 91 327 327 ASP ASP A . n A 1 92 LEU 92 328 328 LEU LEU A . n A 1 93 PRO 93 329 329 PRO PRO A . n A 1 94 ALA 94 330 330 ALA ALA A . n A 1 95 PRO 95 331 331 PRO PRO A . n A 1 96 ILE 96 332 332 ILE ILE A . n A 1 97 GLU 97 333 333 GLU GLU A . n A 1 98 ARG 98 334 334 ARG ARG A . n A 1 99 THR 99 335 335 THR THR A . n A 1 100 ILE 100 336 336 ILE ILE A . n A 1 101 SER 101 337 337 SER SER A . n A 1 102 LYS 102 338 338 LYS LYS A . n A 1 103 PRO 103 339 339 PRO PRO A . n A 1 104 LYS 104 340 340 LYS LYS A . n A 1 105 GLY 105 341 341 GLY GLY A . n A 1 106 SER 106 342 342 SER SER A . n A 1 107 VAL 107 343 343 VAL VAL A . n A 1 108 ARG 108 344 344 ARG ARG A . n A 1 109 ALA 109 345 345 ALA ALA A . n A 1 110 PRO 110 346 346 PRO PRO A . n A 1 111 GLN 111 347 347 GLN GLN A . n A 1 112 VAL 112 348 348 VAL VAL A . n A 1 113 TYR 113 349 349 TYR TYR A . n A 1 114 VAL 114 350 350 VAL VAL A . n A 1 115 LEU 115 351 351 LEU LEU A . n A 1 116 PRO 116 352 352 PRO PRO A . n A 1 117 PRO 117 353 353 PRO PRO A . n A 1 118 PRO 118 354 354 PRO PRO A . n A 1 119 GLU 119 355 355 GLU GLU A . n A 1 120 GLU 120 356 356 GLU GLU A . n A 1 121 GLU 121 357 357 GLU GLU A . n A 1 122 MET 122 358 358 MET MET A . n A 1 123 THR 123 359 359 THR THR A . n A 1 124 LYS 124 360 360 LYS LYS A . n A 1 125 LYS 125 361 361 LYS LYS A . n A 1 126 GLN 126 362 362 GLN GLN A . n A 1 127 VAL 127 363 363 VAL VAL A . n A 1 128 THR 128 364 364 THR THR A . n A 1 129 LEU 129 365 365 LEU LEU A . n A 1 130 THR 130 366 366 THR THR A . n A 1 131 CYS 131 367 367 CYS CYS A . n A 1 132 MET 132 368 368 MET MET A . n A 1 133 VAL 133 369 369 VAL VAL A . n A 1 134 THR 134 370 370 THR THR A . n A 1 135 ASP 135 371 371 ASP ASP A . n A 1 136 PHE 136 372 372 PHE PHE A . n A 1 137 MET 137 373 373 MET MET A . n A 1 138 PRO 138 374 374 PRO PRO A . n A 1 139 GLU 139 375 375 GLU GLU A . n A 1 140 ASP 140 376 376 ASP ASP A . n A 1 141 ILE 141 377 377 ILE ILE A . n A 1 142 TYR 142 378 378 TYR TYR A . n A 1 143 VAL 143 379 379 VAL VAL A . n A 1 144 GLU 144 380 380 GLU GLU A . n A 1 145 TRP 145 381 381 TRP TRP A . n A 1 146 THR 146 382 382 THR THR A . n A 1 147 ASN 147 383 383 ASN ASN A . n A 1 148 ASN 148 384 384 ASN ASN A . n A 1 149 GLY 149 385 385 GLY GLY A . n A 1 150 LYS 150 386 386 LYS LYS A . n A 1 151 THR 151 387 387 THR THR A . n A 1 152 GLU 152 388 388 GLU GLU A . n A 1 153 LEU 153 389 389 LEU LEU A . n A 1 154 ASN 154 390 390 ASN ASN A . n A 1 155 TYR 155 391 391 TYR TYR A . n A 1 156 LYS 156 392 392 LYS LYS A . n A 1 157 ASN 157 393 393 ASN ASN A . n A 1 158 THR 158 394 394 THR THR A . n A 1 159 GLU 159 395 395 GLU GLU A . n A 1 160 PRO 160 396 396 PRO PRO A . n A 1 161 VAL 161 397 397 VAL VAL A . n A 1 162 LEU 162 398 398 LEU LEU A . n A 1 163 ASP 163 399 399 ASP ASP A . n A 1 164 SER 164 400 400 SER SER A . n A 1 165 ASP 165 401 401 ASP ASP A . n A 1 166 GLY 166 402 402 GLY GLY A . n A 1 167 SER 167 403 403 SER SER A . n A 1 168 TYR 168 404 404 TYR TYR A . n A 1 169 PHE 169 405 405 PHE PHE A . n A 1 170 MET 170 406 406 MET MET A . n A 1 171 TYR 171 407 407 TYR TYR A . n A 1 172 SER 172 408 408 SER SER A . n A 1 173 LYS 173 409 409 LYS LYS A . n A 1 174 LEU 174 410 410 LEU LEU A . n A 1 175 ARG 175 411 411 ARG ARG A . n A 1 176 VAL 176 412 412 VAL VAL A . n A 1 177 GLU 177 413 413 GLU GLU A . n A 1 178 LYS 178 414 414 LYS LYS A . n A 1 179 LYS 179 415 415 LYS LYS A . n A 1 180 ASN 180 416 416 ASN ASN A . n A 1 181 TRP 181 417 417 TRP TRP A . n A 1 182 VAL 182 418 418 VAL VAL A . n A 1 183 GLU 183 419 419 GLU GLU A . n A 1 184 ARG 184 420 420 ARG ARG A . n A 1 185 ASN 185 421 421 ASN ASN A . n A 1 186 SER 186 422 422 SER SER A . n A 1 187 TYR 187 423 423 TYR TYR A . n A 1 188 SER 188 424 424 SER SER A . n A 1 189 CYS 189 425 425 CYS CYS A . n A 1 190 SER 190 426 426 SER SER A . n A 1 191 VAL 191 427 427 VAL VAL A . n A 1 192 VAL 192 428 428 VAL VAL A . n A 1 193 HIS 193 429 429 HIS HIS A . n A 1 194 GLU 194 430 430 GLU GLU A . n A 1 195 GLY 195 431 431 GLY GLY A . n A 1 196 LEU 196 432 432 LEU LEU A . n A 1 197 HIS 197 433 433 HIS HIS A . n A 1 198 ASN 198 434 434 ASN ASN A . n A 1 199 HIS 199 435 435 HIS HIS A . n A 1 200 HIS 200 436 436 HIS HIS A . n A 1 201 THR 201 437 437 THR THR A . n A 1 202 THR 202 438 438 THR THR A . n A 1 203 LYS 203 439 439 LYS LYS A . n A 1 204 SER 204 440 440 SER SER A . n A 1 205 PHE 205 441 441 PHE PHE A . n A 1 206 SER 206 442 442 SER SER A . n A 1 207 ARG 207 443 443 ARG ARG A . n A 1 208 SER 208 444 444 SER SER A . n B 2 1 HIS 1 7 7 HIS HIS B . n B 2 2 MET 2 8 8 MET MET B . n B 2 3 VAL 3 9 9 VAL VAL B . n B 2 4 HIS 4 10 10 HIS HIS B . n B 2 5 ILE 5 11 11 ILE ILE B . n B 2 6 THR 6 12 12 THR THR B . n B 2 7 LEU 7 13 13 LEU LEU B . n B 2 8 ASP 8 14 14 ASP ASP B . n B 2 9 ARG 9 15 15 ARG ARG B . n B 2 10 ASN 10 16 16 ASN ASN B . n B 2 11 THR 11 17 17 THR THR B . n B 2 12 ALA 12 18 18 ALA ALA B . n B 2 13 ASN 13 19 19 ASN ASN B . n B 2 14 SER 14 20 20 SER SER B . n B 2 15 TRP 15 21 21 TRP TRP B . n B 2 16 LEU 16 22 22 LEU LEU B . n B 2 17 ILE 17 23 23 ILE ILE B . n B 2 18 ILE 18 24 24 ILE ILE B . n B 2 19 SER 19 25 25 SER SER B . n B 2 20 LYS 20 26 26 LYS LYS B . n B 2 21 ASP 21 27 27 ASP ASP B . n B 2 22 ARG 22 28 28 ARG ARG B . n B 2 23 ARG 23 29 29 ARG ARG B . n B 2 24 GLN 24 30 30 GLN GLN B . n B 2 25 VAL 25 31 31 VAL VAL B . n B 2 26 ARG 26 32 32 ARG ARG B . n B 2 27 MET 27 33 33 MET MET B . n B 2 28 GLY 28 34 34 GLY GLY B . n B 2 29 ASP 29 35 35 ASP ASP B . n B 2 30 THR 30 36 36 THR THR B . n B 2 31 HIS 31 37 37 HIS HIS B . n B 2 32 GLN 32 38 38 GLN GLN B . n B 2 33 ASN 33 39 39 ASN ASN B . n B 2 34 VAL 34 40 40 VAL VAL B . n B 2 35 SER 35 41 41 SER SER B . n B 2 36 ASP 36 42 42 ASP ASP B . n B 2 37 ASN 37 43 43 ASN ASN B . n B 2 38 LYS 38 44 44 LYS LYS B . n B 2 39 GLU 39 45 45 GLU GLU B . n B 2 40 ARG 40 46 46 ARG ARG B . n B 2 41 PHE 41 47 47 PHE PHE B . n B 2 42 SER 42 48 48 SER SER B . n B 2 43 ASN 43 49 49 ASN ASN B . n B 2 44 TYR 44 50 50 TYR TYR B . n B 2 45 PRO 45 51 51 PRO PRO B . n B 2 46 MET 46 52 52 MET MET B . n B 2 47 VAL 47 53 53 VAL VAL B . n B 2 48 LEU 48 54 54 LEU LEU B . n B 2 49 GLY 49 55 55 GLY GLY B . n B 2 50 ALA 50 56 56 ALA ALA B . n B 2 51 GLN 51 57 57 GLN GLN B . n B 2 52 ARG 52 58 58 ARG ARG B . n B 2 53 PHE 53 59 59 PHE PHE B . n B 2 54 SER 54 60 60 SER SER B . n B 2 55 SER 55 61 61 SER SER B . n B 2 56 GLY 56 62 62 GLY GLY B . n B 2 57 LYS 57 63 63 LYS LYS B . n B 2 58 MET 58 64 64 MET MET B . n B 2 59 TYR 59 65 65 TYR TYR B . n B 2 60 TRP 60 66 66 TRP TRP B . n B 2 61 GLU 61 67 67 GLU GLU B . n B 2 62 VAL 62 68 68 VAL VAL B . n B 2 63 ASP 63 69 69 ASP ASP B . n B 2 64 VAL 64 70 70 VAL VAL B . n B 2 65 THR 65 71 71 THR THR B . n B 2 66 GLN 66 72 72 GLN GLN B . n B 2 67 LYS 67 73 73 LYS LYS B . n B 2 68 GLU 68 74 74 GLU GLU B . n B 2 69 ALA 69 75 75 ALA ALA B . n B 2 70 TRP 70 76 76 TRP TRP B . n B 2 71 ASP 71 77 77 ASP ASP B . n B 2 72 LEU 72 78 78 LEU LEU B . n B 2 73 GLY 73 79 79 GLY GLY B . n B 2 74 VAL 74 80 80 VAL VAL B . n B 2 75 CYS 75 81 81 CYS CYS B . n B 2 76 ARG 76 82 82 ARG ARG B . n B 2 77 ASP 77 83 83 ASP ASP B . n B 2 78 SER 78 84 84 SER SER B . n B 2 79 VAL 79 85 85 VAL VAL B . n B 2 80 GLN 80 86 86 GLN GLN B . n B 2 81 ARG 81 87 87 ARG ARG B . n B 2 82 LYS 82 88 88 LYS LYS B . n B 2 83 GLY 83 89 89 GLY GLY B . n B 2 84 GLN 84 90 90 GLN GLN B . n B 2 85 PHE 85 91 91 PHE PHE B . n B 2 86 SER 86 92 92 SER SER B . n B 2 87 LEU 87 93 93 LEU LEU B . n B 2 88 SER 88 94 94 SER SER B . n B 2 89 PRO 89 95 95 PRO PRO B . n B 2 90 GLU 90 96 96 GLU GLU B . n B 2 91 ASN 91 97 97 ASN ASN B . n B 2 92 GLY 92 98 98 GLY GLY B . n B 2 93 PHE 93 99 99 PHE PHE B . n B 2 94 TRP 94 100 100 TRP TRP B . n B 2 95 THR 95 101 101 THR THR B . n B 2 96 ILE 96 102 102 ILE ILE B . n B 2 97 TRP 97 103 103 TRP TRP B . n B 2 98 LEU 98 104 104 LEU LEU B . n B 2 99 TRP 99 105 105 TRP TRP B . n B 2 100 GLN 100 106 106 GLN GLN B . n B 2 101 LYS 101 107 107 LYS LYS B . n B 2 102 SER 102 108 108 SER SER B . n B 2 103 TYR 103 109 109 TYR TYR B . n B 2 104 GLU 104 110 110 GLU GLU B . n B 2 105 ALA 105 111 111 ALA ALA B . n B 2 106 GLY 106 112 112 GLY GLY B . n B 2 107 THR 107 113 113 THR THR B . n B 2 108 SER 108 114 114 SER SER B . n B 2 109 PRO 109 115 115 PRO PRO B . n B 2 110 GLN 110 116 116 GLN GLN B . n B 2 111 THR 111 117 117 THR THR B . n B 2 112 THR 112 118 118 THR THR B . n B 2 113 LEU 113 119 119 LEU LEU B . n B 2 114 HIS 114 120 120 HIS HIS B . n B 2 115 ILE 115 121 121 ILE ILE B . n B 2 116 GLN 116 122 122 GLN GLN B . n B 2 117 VAL 117 123 123 VAL VAL B . n B 2 118 PRO 118 124 124 PRO PRO B . n B 2 119 PRO 119 125 125 PRO PRO B . n B 2 120 CYS 120 126 126 CYS CYS B . n B 2 121 GLN 121 127 127 GLN GLN B . n B 2 122 ILE 122 128 128 ILE ILE B . n B 2 123 GLY 123 129 129 GLY GLY B . n B 2 124 ILE 124 130 130 ILE ILE B . n B 2 125 PHE 125 131 131 PHE PHE B . n B 2 126 VAL 126 132 132 VAL VAL B . n B 2 127 ASP 127 133 133 ASP ASP B . n B 2 128 TYR 128 134 134 TYR TYR B . n B 2 129 GLU 129 135 135 GLU GLU B . n B 2 130 ALA 130 136 136 ALA ALA B . n B 2 131 GLY 131 137 137 GLY GLY B . n B 2 132 VAL 132 138 138 VAL VAL B . n B 2 133 VAL 133 139 139 VAL VAL B . n B 2 134 SER 134 140 140 SER SER B . n B 2 135 PHE 135 141 141 PHE PHE B . n B 2 136 TYR 136 142 142 TYR TYR B . n B 2 137 ASN 137 143 143 ASN ASN B . n B 2 138 ILE 138 144 144 ILE ILE B . n B 2 139 THR 139 145 145 THR THR B . n B 2 140 ASP 140 146 146 ASP ASP B . n B 2 141 HIS 141 147 147 HIS HIS B . n B 2 142 GLY 142 148 148 GLY GLY B . n B 2 143 SER 143 149 149 SER SER B . n B 2 144 LEU 144 150 150 LEU LEU B . n B 2 145 ILE 145 151 151 ILE ILE B . n B 2 146 TYR 146 152 152 TYR TYR B . n B 2 147 THR 147 153 153 THR THR B . n B 2 148 PHE 148 154 154 PHE PHE B . n B 2 149 SER 149 155 155 SER SER B . n B 2 150 GLU 150 156 156 GLU GLU B . n B 2 151 CYS 151 157 157 CYS CYS B . n B 2 152 VAL 152 158 158 VAL VAL B . n B 2 153 PHE 153 159 159 PHE PHE B . n B 2 154 ALA 154 160 160 ALA ALA B . n B 2 155 GLY 155 161 161 GLY GLY B . n B 2 156 PRO 156 162 162 PRO PRO B . n B 2 157 LEU 157 163 163 LEU LEU B . n B 2 158 ARG 158 164 164 ARG ARG B . n B 2 159 PRO 159 165 165 PRO PRO B . n B 2 160 PHE 160 166 166 PHE PHE B . n B 2 161 PHE 161 167 167 PHE PHE B . n B 2 162 ASN 162 168 168 ASN ASN B . n B 2 163 VAL 163 169 169 VAL VAL B . n B 2 164 GLY 164 170 170 GLY GLY B . n B 2 165 PHE 165 171 171 PHE PHE B . n B 2 166 ASN 166 172 172 ASN ASN B . n B 2 167 TYR 167 173 173 TYR TYR B . n B 2 168 SER 168 174 174 SER SER B . n B 2 169 GLY 169 175 175 GLY GLY B . n B 2 170 GLY 170 176 176 GLY GLY B . n B 2 171 ASN 171 177 177 ASN ASN B . n B 2 172 ALA 172 178 178 ALA ALA B . n B 2 173 ALA 173 179 179 ALA ALA B . n B 2 174 PRO 174 180 180 PRO PRO B . n B 2 175 LEU 175 181 181 LEU LEU B . n B 2 176 LYS 176 182 182 LYS LYS B . n B 2 177 LEU 177 183 183 LEU LEU B . n B 2 178 CYS 178 184 184 CYS CYS B . n B 2 179 PRO 179 185 185 PRO PRO B . n B 2 180 LEU 180 186 186 LEU LEU B . n B 2 181 LYS 181 187 ? ? ? B . n B 2 182 MET 182 188 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MAN 1 1449 1449 MAN MAN A . E 5 FUC 1 1451 1451 FUC FUC A . F 6 HOH 1 2001 2001 HOH HOH A . F 6 HOH 2 2002 2002 HOH HOH A . F 6 HOH 3 2003 2003 HOH HOH A . F 6 HOH 4 2004 2004 HOH HOH A . F 6 HOH 5 2005 2005 HOH HOH A . F 6 HOH 6 2006 2006 HOH HOH A . F 6 HOH 7 2007 2007 HOH HOH A . F 6 HOH 8 2008 2008 HOH HOH A . F 6 HOH 9 2009 2009 HOH HOH A . F 6 HOH 10 2010 2010 HOH HOH A . F 6 HOH 11 2011 2011 HOH HOH A . F 6 HOH 12 2012 2012 HOH HOH A . F 6 HOH 13 2013 2013 HOH HOH A . F 6 HOH 14 2014 2014 HOH HOH A . F 6 HOH 15 2015 2015 HOH HOH A . F 6 HOH 16 2016 2016 HOH HOH A . F 6 HOH 17 2017 2017 HOH HOH A . F 6 HOH 18 2018 2018 HOH HOH A . F 6 HOH 19 2019 2019 HOH HOH A . F 6 HOH 20 2020 2020 HOH HOH A . F 6 HOH 21 2021 2021 HOH HOH A . F 6 HOH 22 2022 2022 HOH HOH A . F 6 HOH 23 2023 2023 HOH HOH A . F 6 HOH 24 2024 2024 HOH HOH A . F 6 HOH 25 2025 2025 HOH HOH A . F 6 HOH 26 2026 2026 HOH HOH A . F 6 HOH 27 2027 2027 HOH HOH A . F 6 HOH 28 2028 2028 HOH HOH A . F 6 HOH 29 2029 2029 HOH HOH A . F 6 HOH 30 2030 2030 HOH HOH A . F 6 HOH 31 2031 2031 HOH HOH A . F 6 HOH 32 2032 2032 HOH HOH A . F 6 HOH 33 2033 2033 HOH HOH A . F 6 HOH 34 2034 2034 HOH HOH A . F 6 HOH 35 2035 2035 HOH HOH A . F 6 HOH 36 2036 2036 HOH HOH A . F 6 HOH 37 2037 2037 HOH HOH A . F 6 HOH 38 2038 2038 HOH HOH A . F 6 HOH 39 2039 2039 HOH HOH A . F 6 HOH 40 2040 2040 HOH HOH A . F 6 HOH 41 2041 2041 HOH HOH A . F 6 HOH 42 2042 2042 HOH HOH A . F 6 HOH 43 2043 2043 HOH HOH A . F 6 HOH 44 2044 2044 HOH HOH A . F 6 HOH 45 2045 2045 HOH HOH A . F 6 HOH 46 2046 2046 HOH HOH A . F 6 HOH 47 2047 2047 HOH HOH A . F 6 HOH 48 2048 2048 HOH HOH A . F 6 HOH 49 2049 2049 HOH HOH A . F 6 HOH 50 2050 2050 HOH HOH A . F 6 HOH 51 2051 2051 HOH HOH A . F 6 HOH 52 2052 2052 HOH HOH A . F 6 HOH 53 2053 2053 HOH HOH A . F 6 HOH 54 2054 2054 HOH HOH A . F 6 HOH 55 2055 2055 HOH HOH A . F 6 HOH 56 2056 2056 HOH HOH A . F 6 HOH 57 2057 2057 HOH HOH A . F 6 HOH 58 2058 2058 HOH HOH A . F 6 HOH 59 2059 2059 HOH HOH A . F 6 HOH 60 2060 2060 HOH HOH A . F 6 HOH 61 2061 2061 HOH HOH A . F 6 HOH 62 2062 2062 HOH HOH A . F 6 HOH 63 2063 2063 HOH HOH A . F 6 HOH 64 2064 2064 HOH HOH A . F 6 HOH 65 2065 2065 HOH HOH A . F 6 HOH 66 2066 2066 HOH HOH A . F 6 HOH 67 2067 2067 HOH HOH A . F 6 HOH 68 2068 2068 HOH HOH A . F 6 HOH 69 2069 2069 HOH HOH A . F 6 HOH 70 2070 2070 HOH HOH A . F 6 HOH 71 2071 2071 HOH HOH A . F 6 HOH 72 2072 2072 HOH HOH A . F 6 HOH 73 2073 2073 HOH HOH A . F 6 HOH 74 2074 2074 HOH HOH A . F 6 HOH 75 2075 2075 HOH HOH A . F 6 HOH 76 2076 2076 HOH HOH A . F 6 HOH 77 2077 2077 HOH HOH A . F 6 HOH 78 2078 2078 HOH HOH A . F 6 HOH 79 2079 2079 HOH HOH A . F 6 HOH 80 2080 2080 HOH HOH A . F 6 HOH 81 2081 2081 HOH HOH A . F 6 HOH 82 2082 2082 HOH HOH A . F 6 HOH 83 2083 2083 HOH HOH A . F 6 HOH 84 2084 2084 HOH HOH A . F 6 HOH 85 2085 2085 HOH HOH A . F 6 HOH 86 2086 2086 HOH HOH A . F 6 HOH 87 2087 2087 HOH HOH A . F 6 HOH 88 2088 2088 HOH HOH A . F 6 HOH 89 2089 2089 HOH HOH A . F 6 HOH 90 2090 2090 HOH HOH A . F 6 HOH 91 2091 2091 HOH HOH A . F 6 HOH 92 2092 2092 HOH HOH A . F 6 HOH 93 2093 2093 HOH HOH A . F 6 HOH 94 2094 2094 HOH HOH A . G 6 HOH 1 2001 2001 HOH HOH B . G 6 HOH 2 2002 2002 HOH HOH B . G 6 HOH 3 2003 2003 HOH HOH B . G 6 HOH 4 2004 2004 HOH HOH B . G 6 HOH 5 2005 2005 HOH HOH B . G 6 HOH 6 2006 2006 HOH HOH B . G 6 HOH 7 2007 2007 HOH HOH B . G 6 HOH 8 2008 2008 HOH HOH B . G 6 HOH 9 2009 2009 HOH HOH B . G 6 HOH 10 2010 2010 HOH HOH B . G 6 HOH 11 2011 2011 HOH HOH B . G 6 HOH 12 2012 2012 HOH HOH B . G 6 HOH 13 2013 2013 HOH HOH B . G 6 HOH 14 2014 2014 HOH HOH B . G 6 HOH 15 2015 2015 HOH HOH B . G 6 HOH 16 2016 2016 HOH HOH B . G 6 HOH 17 2017 2017 HOH HOH B . G 6 HOH 18 2018 2018 HOH HOH B . G 6 HOH 19 2019 2019 HOH HOH B . G 6 HOH 20 2020 2020 HOH HOH B . G 6 HOH 21 2021 2021 HOH HOH B . G 6 HOH 22 2022 2022 HOH HOH B . G 6 HOH 23 2023 2023 HOH HOH B . G 6 HOH 24 2024 2024 HOH HOH B . G 6 HOH 25 2025 2025 HOH HOH B . G 6 HOH 26 2026 2026 HOH HOH B . G 6 HOH 27 2027 2027 HOH HOH B . G 6 HOH 28 2028 2028 HOH HOH B . G 6 HOH 29 2029 2029 HOH HOH B . G 6 HOH 30 2030 2030 HOH HOH B . G 6 HOH 31 2031 2031 HOH HOH B . G 6 HOH 32 2032 2032 HOH HOH B . G 6 HOH 33 2033 2033 HOH HOH B . G 6 HOH 34 2034 2034 HOH HOH B . G 6 HOH 35 2035 2035 HOH HOH B . G 6 HOH 36 2036 2036 HOH HOH B . G 6 HOH 37 2037 2037 HOH HOH B . G 6 HOH 38 2038 2038 HOH HOH B . G 6 HOH 39 2039 2039 HOH HOH B . G 6 HOH 40 2040 2040 HOH HOH B . G 6 HOH 41 2041 2041 HOH HOH B . G 6 HOH 42 2042 2042 HOH HOH B . G 6 HOH 43 2043 2043 HOH HOH B . G 6 HOH 44 2044 2044 HOH HOH B . G 6 HOH 45 2045 2045 HOH HOH B . G 6 HOH 46 2046 2046 HOH HOH B . G 6 HOH 47 2047 2047 HOH HOH B . G 6 HOH 48 2048 2048 HOH HOH B . G 6 HOH 49 2049 2049 HOH HOH B . G 6 HOH 50 2050 2050 HOH HOH B . G 6 HOH 51 2051 2051 HOH HOH B . G 6 HOH 52 2052 2052 HOH HOH B . G 6 HOH 53 2053 2053 HOH HOH B . G 6 HOH 54 2054 2054 HOH HOH B . G 6 HOH 55 2055 2055 HOH HOH B . G 6 HOH 56 2056 2056 HOH HOH B . G 6 HOH 57 2057 2057 HOH HOH B . G 6 HOH 58 2058 2058 HOH HOH B . G 6 HOH 59 2059 2059 HOH HOH B . G 6 HOH 60 2060 2060 HOH HOH B . G 6 HOH 61 2061 2061 HOH HOH B . G 6 HOH 62 2062 2062 HOH HOH B . G 6 HOH 63 2063 2063 HOH HOH B . G 6 HOH 64 2064 2064 HOH HOH B . G 6 HOH 65 2065 2065 HOH HOH B . G 6 HOH 66 2066 2066 HOH HOH B . G 6 HOH 67 2067 2067 HOH HOH B . G 6 HOH 68 2068 2068 HOH HOH B . G 6 HOH 69 2069 2069 HOH HOH B . G 6 HOH 70 2070 2070 HOH HOH B . G 6 HOH 71 2071 2071 HOH HOH B . G 6 HOH 72 2072 2072 HOH HOH B . G 6 HOH 73 2073 2073 HOH HOH B . G 6 HOH 74 2074 2074 HOH HOH B . G 6 HOH 75 2075 2075 HOH HOH B . G 6 HOH 76 2076 2076 HOH HOH B . G 6 HOH 77 2077 2077 HOH HOH B . G 6 HOH 78 2078 2078 HOH HOH B . G 6 HOH 79 2079 2079 HOH HOH B . G 6 HOH 80 2080 2080 HOH HOH B . G 6 HOH 81 2081 2081 HOH HOH B . G 6 HOH 82 2082 2082 HOH HOH B . G 6 HOH 83 2083 2083 HOH HOH B . G 6 HOH 84 2084 2084 HOH HOH B . G 6 HOH 85 2085 2085 HOH HOH B . G 6 HOH 86 2086 2086 HOH HOH B . G 6 HOH 87 2087 2087 HOH HOH B . G 6 HOH 88 2088 2088 HOH HOH B . G 6 HOH 89 2089 2089 HOH HOH B . G 6 HOH 90 2090 2090 HOH HOH B . G 6 HOH 91 2091 2091 HOH HOH B . G 6 HOH 92 2092 2092 HOH HOH B . G 6 HOH 93 2093 2093 HOH HOH B . G 6 HOH 94 2094 2094 HOH HOH B . G 6 HOH 95 2095 2095 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 61 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 297 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6730 ? 1 MORE -37.8 ? 1 'SSA (A^2)' 44310 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 45.4580000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -62.4375000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2075 ? F HOH . 2 1 A HOH 2086 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' Other 6 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' chem_comp 4 2 'Structure model' database_PDB_caveat 5 2 'Structure model' entity 6 2 'Structure model' pdbx_branch_scheme 7 2 'Structure model' pdbx_chem_comp_identifier 8 2 'Structure model' pdbx_database_status 9 2 'Structure model' pdbx_entity_branch 10 2 'Structure model' pdbx_entity_branch_descriptor 11 2 'Structure model' pdbx_entity_branch_link 12 2 'Structure model' pdbx_entity_branch_list 13 2 'Structure model' pdbx_entity_nonpoly 14 2 'Structure model' pdbx_nonpoly_scheme 15 2 'Structure model' pdbx_struct_assembly_gen 16 2 'Structure model' pdbx_struct_special_symmetry 17 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 18 2 'Structure model' pdbx_validate_chiral 19 2 'Structure model' pdbx_validate_close_contact 20 2 'Structure model' struct_asym 21 2 'Structure model' struct_conn 22 2 'Structure model' struct_site 23 2 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_asym_id' 2 2 'Structure model' '_atom_site.auth_seq_id' 3 2 'Structure model' '_atom_site.label_asym_id' 4 2 'Structure model' '_atom_site.label_entity_id' 5 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 6 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 7 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 8 2 'Structure model' '_chem_comp.name' 9 2 'Structure model' '_chem_comp.type' 10 2 'Structure model' '_pdbx_database_status.status_code_sf' 11 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 12 2 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 13 2 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id' 14 2 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 15 2 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 16 2 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 17 2 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 18 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 19 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 20 2 'Structure model' '_struct_conn.pdbx_dist_value' 21 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 2 'Structure model' '_struct_conn.pdbx_role' 23 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 15.7215 14.3752 -20.5431 0.0235 0.0335 0.0362 0.0011 0.0140 -0.0072 0.0587 0.3467 0.5843 0.1378 -0.0774 -0.1250 0.0219 0.0123 0.0148 0.0452 0.0144 0.0303 0.0195 -0.0709 -0.0364 'X-RAY DIFFRACTION' 2 ? refined 15.6532 33.5096 5.1796 0.0118 0.0417 0.0513 -0.0005 0.0097 -0.0079 0.3958 0.6935 0.8381 -0.0624 0.1006 0.1782 -0.0235 -0.0235 -0.0209 0.0757 -0.0195 0.0314 0.0573 -0.0396 0.0430 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 237 ? ? A 1451 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 7 ? ? B 186 ? ? ? ? # _software.name REFMAC _software.classification refinement _software.version 5.7.0032 _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O3 A FUC 1451 ? ? O A HOH 2093 ? ? 0.30 2 1 C3 A FUC 1451 ? ? O A HOH 2093 ? ? 1.65 3 1 ND2 A ASN 297 ? ? O5 C NAG 1 ? ? 1.79 4 1 O B HOH 2002 ? ? O B HOH 2030 ? ? 1.89 5 1 O A HOH 2036 ? ? O A HOH 2092 ? ? 2.08 6 1 O3 C BMA 3 ? ? O5 A MAN 1449 ? ? 2.09 7 1 O A GLN 290 ? ? N A HIS 292 ? ? 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 96 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 96 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.347 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.095 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASN 297 ? ? CA A ASN 297 ? ? C A ASN 297 ? ? 94.34 110.40 -16.06 2.00 N 2 1 CB A ASP 376 ? ? CG A ASP 376 ? ? OD1 A ASP 376 ? ? 124.70 118.30 6.40 0.90 N 3 1 CB A ASP 376 ? ? CG A ASP 376 ? ? OD2 A ASP 376 ? ? 109.12 118.30 -9.18 0.90 N 4 1 CB B ASP 77 ? ? CG B ASP 77 ? ? OD1 B ASP 77 ? ? 124.03 118.30 5.73 0.90 N 5 1 CB B VAL 80 ? ? CA B VAL 80 ? ? C B VAL 80 ? ? 99.50 111.40 -11.90 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 291 ? ? -40.23 75.25 2 1 HIS A 292 ? ? 11.41 78.65 3 1 TYR A 296 ? ? -28.80 -65.00 4 1 ASN A 297 ? ? -26.50 -4.37 5 1 PRO A 329 ? ? -57.04 -1.38 6 1 ALA A 330 ? ? 173.90 159.71 7 1 THR A 359 ? ? -119.73 79.16 8 1 ASN A 390 ? ? -105.34 68.66 9 1 VAL A 418 ? ? -80.65 -89.64 10 1 ARG A 420 ? ? 24.79 -117.96 11 1 ASN A 421 ? ? 58.51 140.64 12 1 PHE A 441 ? ? 177.50 -171.92 13 1 ARG A 443 ? ? -21.98 115.44 14 1 ASN B 39 ? ? 72.98 60.71 15 1 ASP B 146 ? ? -103.89 49.40 16 1 GLU B 156 ? ? 39.95 46.38 17 1 PRO B 185 ? ? -39.71 101.25 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id C _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 1 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A MAN 1449 ? O1 ? D MAN 1 O1 2 1 N 1 A FUC 1451 ? O1 ? E FUC 1 O1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B LYS 187 ? B LYS 181 2 1 Y 1 B MET 188 ? B MET 182 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 C NAG 1 A NAG 1444 n C 3 NAG 2 C NAG 2 A NAG 1445 n C 3 BMA 3 C BMA 3 A BMA 1446 n C 3 MAN 4 C MAN 4 A MAN 1447 n C 3 NAG 5 C NAG 5 A NAG 1448 n C 3 GAL 6 C GAL 6 A GAL 1450 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGalpb1-4DGlcpNAcb1-2DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4/a4-b1_b4-c1_c6-d1_d2-e1_e4-f1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 4 MAN C1 O1 3 BMA O6 HO6 sing ? 4 3 5 NAG C1 O1 4 MAN O2 HO2 sing ? 5 3 6 GAL C1 O1 5 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 MAN 4 n 3 NAG 5 n 3 GAL 6 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 alpha-D-mannopyranose MAN 5 alpha-L-fucopyranose FUC 6 water HOH #