HEADER IMMUNE SYSTEM/LIGASE 19-FEB-13 3ZO0 TITLE MOUSE IGG2A IN COMPLEX WITH MOUSE TRIM21 PRYSPRY CAVEAT 3ZO0 NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 NAG A 1444 IS PLANAR CAVEAT 2 3ZO0 AT ATOM C1 MAN A 1449 IS NOT LINKED TO SACCHARIDE CHAIN FUC CAVEAT 3 3ZO0 A 1451 IS NOT LINKED TO SACCHARIDE CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-2A CHAIN C REGION, A ALLELE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FC, RESIDUES 120-327; COMPND 5 SYNONYM: IGG2A, IMMUNOGLOBULIN HEAVY CHAIN GAMMA POLYPEPTIDE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM21; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 291-470; COMPND 10 SYNONYM: TRIM21,52 KDA RO PROTEIN, 52 KDA RIBONUCLEOPROTEIN COMPND 11 AUTOANTIGEN RO/SS-A, RO(SS-A), SJOEGREN SYNDROME TYPE A ANTIGEN, SS- COMPND 12 A, TRIPARTITE MOTIF-CONTAINING PROTEIN 21; COMPND 13 EC: 6.3.2.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE SYSTEM-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.C.JAMES REVDAT 2 29-JUL-20 3ZO0 1 CAVEAT COMPND REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 22-MAY-13 3ZO0 0 SPRSDE 22-MAY-13 3ZO0 2VOL JRNL AUTH A.H.KEEBLE,Z.KHAN,A.FORSTER,L.C.JAMES JRNL TITL TRIM21 IS AN IGG RECEPTOR THAT IS STRUCTURALLY, JRNL TITL 2 THERMODYNAMICALLY, AND KINETICALLY CONSERVED. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 6045 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18420815 JRNL DOI 10.1073/PNAS.0800159105 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 34168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1798 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2370 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.364 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3311 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3035 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4516 ; 2.236 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6980 ; 2.046 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 7.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;32.914 ;24.342 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;18.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.192 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3640 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 760 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 5.643 ; 3.315 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1549 ; 5.640 ; 3.312 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1934 ; 6.321 ; 4.954 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1935 ; 6.337 ; 4.959 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1761 ; 6.347 ; 3.840 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1762 ; 6.346 ; 3.841 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2583 ; 7.123 ; 5.529 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3868 ; 7.493 ;28.596 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3819 ; 7.477 ;28.448 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6346 ;11.758 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 63 ;29.817 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6377 ;14.664 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 1451 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7215 14.3752 -20.5431 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0335 REMARK 3 T33: 0.0362 T12: 0.0011 REMARK 3 T13: 0.0140 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.0587 L22: 0.3467 REMARK 3 L33: 0.5843 L12: 0.1378 REMARK 3 L13: -0.0774 L23: -0.1250 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.0123 S13: 0.0148 REMARK 3 S21: 0.0452 S22: 0.0144 S23: 0.0303 REMARK 3 S31: 0.0195 S32: -0.0709 S33: -0.0364 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6532 33.5096 5.1796 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.0417 REMARK 3 T33: 0.0513 T12: -0.0005 REMARK 3 T13: 0.0097 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.3958 L22: 0.6935 REMARK 3 L33: 0.8381 L12: -0.0624 REMARK 3 L13: 0.1006 L23: 0.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: -0.0235 S13: -0.0209 REMARK 3 S21: 0.0757 S22: -0.0195 S23: 0.0314 REMARK 3 S31: 0.0573 S32: -0.0396 S33: 0.0430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ZO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.43750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.43750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.72900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.09250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.72900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.09250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.43750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.72900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.09250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.43750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.72900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.09250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 45.45800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -62.43750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2075 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2086 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 187 REMARK 465 MET B 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 FUC A 1451 O HOH A 2093 0.30 REMARK 500 C3 FUC A 1451 O HOH A 2093 1.65 REMARK 500 ND2 ASN A 297 O5 NAG C 1 1.79 REMARK 500 O HOH B 2002 O HOH B 2030 1.89 REMARK 500 O HOH A 2036 O HOH A 2092 2.08 REMARK 500 O3 BMA C 3 O5 MAN A 1449 2.09 REMARK 500 O GLN A 290 N HIS A 292 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 96 CD GLU B 96 OE2 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 297 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP A 376 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 376 CB - CG - OD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP B 77 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 VAL B 80 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 291 75.25 -40.23 REMARK 500 HIS A 292 78.65 11.41 REMARK 500 TYR A 296 -65.00 -28.80 REMARK 500 ASN A 297 -4.37 -26.50 REMARK 500 PRO A 329 -1.38 -57.04 REMARK 500 ALA A 330 159.71 173.90 REMARK 500 THR A 359 79.16 -119.73 REMARK 500 ASN A 390 68.66 -105.34 REMARK 500 VAL A 418 -89.64 -80.65 REMARK 500 ARG A 420 -117.96 24.79 REMARK 500 ASN A 421 140.64 58.51 REMARK 500 PHE A 441 -171.92 177.50 REMARK 500 ARG A 443 115.44 -21.98 REMARK 500 ASN B 39 60.71 72.98 REMARK 500 ASP B 146 49.40 -103.89 REMARK 500 GLU B 156 46.38 39.95 REMARK 500 PRO B 185 101.25 -39.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN A 1449 REMARK 610 FUC A 1451 DBREF 3ZO0 A 237 444 UNP P01863 GCAA_MOUSE 120 327 DBREF 3ZO0 B 9 188 UNP Q62191 RO52_MOUSE 291 470 SEQADV 3ZO0 SER A 444 UNP P01863 THR 327 CONFLICT SEQADV 3ZO0 HIS B 7 UNP Q62191 EXPRESSION TAG SEQADV 3ZO0 MET B 8 UNP Q62191 EXPRESSION TAG SEQADV 3ZO0 LYS B 107 UNP Q62191 ASP 389 CONFLICT SEQRES 1 A 208 GLY PRO SER VAL PHE ILE PHE PRO PRO LYS ILE LYS ASP SEQRES 2 A 208 VAL LEU MET ILE SER LEU SER PRO ILE VAL THR CYS VAL SEQRES 3 A 208 VAL VAL ASP VAL SER GLU ASP ASP PRO ASP VAL GLN ILE SEQRES 4 A 208 SER TRP PHE VAL ASN ASN VAL GLU VAL HIS THR ALA GLN SEQRES 5 A 208 THR GLN THR HIS ARG GLU ASP TYR ASN SER THR LEU ARG SEQRES 6 A 208 VAL VAL SER ALA LEU PRO ILE GLN HIS GLN ASP TRP MET SEQRES 7 A 208 SER GLY LYS GLU PHE LYS CYS LYS VAL ASN ASN LYS ASP SEQRES 8 A 208 LEU PRO ALA PRO ILE GLU ARG THR ILE SER LYS PRO LYS SEQRES 9 A 208 GLY SER VAL ARG ALA PRO GLN VAL TYR VAL LEU PRO PRO SEQRES 10 A 208 PRO GLU GLU GLU MET THR LYS LYS GLN VAL THR LEU THR SEQRES 11 A 208 CYS MET VAL THR ASP PHE MET PRO GLU ASP ILE TYR VAL SEQRES 12 A 208 GLU TRP THR ASN ASN GLY LYS THR GLU LEU ASN TYR LYS SEQRES 13 A 208 ASN THR GLU PRO VAL LEU ASP SER ASP GLY SER TYR PHE SEQRES 14 A 208 MET TYR SER LYS LEU ARG VAL GLU LYS LYS ASN TRP VAL SEQRES 15 A 208 GLU ARG ASN SER TYR SER CYS SER VAL VAL HIS GLU GLY SEQRES 16 A 208 LEU HIS ASN HIS HIS THR THR LYS SER PHE SER ARG SER SEQRES 1 B 182 HIS MET VAL HIS ILE THR LEU ASP ARG ASN THR ALA ASN SEQRES 2 B 182 SER TRP LEU ILE ILE SER LYS ASP ARG ARG GLN VAL ARG SEQRES 3 B 182 MET GLY ASP THR HIS GLN ASN VAL SER ASP ASN LYS GLU SEQRES 4 B 182 ARG PHE SER ASN TYR PRO MET VAL LEU GLY ALA GLN ARG SEQRES 5 B 182 PHE SER SER GLY LYS MET TYR TRP GLU VAL ASP VAL THR SEQRES 6 B 182 GLN LYS GLU ALA TRP ASP LEU GLY VAL CYS ARG ASP SER SEQRES 7 B 182 VAL GLN ARG LYS GLY GLN PHE SER LEU SER PRO GLU ASN SEQRES 8 B 182 GLY PHE TRP THR ILE TRP LEU TRP GLN LYS SER TYR GLU SEQRES 9 B 182 ALA GLY THR SER PRO GLN THR THR LEU HIS ILE GLN VAL SEQRES 10 B 182 PRO PRO CYS GLN ILE GLY ILE PHE VAL ASP TYR GLU ALA SEQRES 11 B 182 GLY VAL VAL SER PHE TYR ASN ILE THR ASP HIS GLY SER SEQRES 12 B 182 LEU ILE TYR THR PHE SER GLU CYS VAL PHE ALA GLY PRO SEQRES 13 B 182 LEU ARG PRO PHE PHE ASN VAL GLY PHE ASN TYR SER GLY SEQRES 14 B 182 GLY ASN ALA ALA PRO LEU LYS LEU CYS PRO LEU LYS MET MODRES 3ZO0 ASN A 297 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN A1449 11 HET FUC A1451 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 GAL C6 H12 O6 FORMUL 5 FUC C6 H12 O5 FORMUL 6 HOH *189(H2 O) HELIX 1 1 LYS A 246 MET A 252 1 7 HELIX 2 2 GLN A 309 SER A 315 1 7 HELIX 3 3 PRO A 354 THR A 359 5 6 HELIX 4 4 LYS A 414 GLU A 419 1 6 HELIX 5 5 LEU A 432 ASN A 434 5 3 HELIX 6 6 ASP B 14 ALA B 18 5 5 HELIX 7 7 SER B 94 ASN B 97 5 4 SHEET 1 AA 4 SER A 239 PHE A 243 0 SHEET 2 AA 4 ILE A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA 4 THR A 299 PRO A 307 -1 O LEU A 300 N VAL A 266 SHEET 4 AA 4 GLN A 288 ASP A 295 -1 O GLN A 288 N ALA A 305 SHEET 1 AB 4 VAL A 282 VAL A 284 0 SHEET 2 AB 4 GLN A 274 VAL A 279 -1 O TRP A 277 N VAL A 284 SHEET 3 AB 4 PHE A 319 ASN A 324 -1 O LYS A 320 N PHE A 278 SHEET 4 AB 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AC 4 GLN A 347 LEU A 351 0 SHEET 2 AC 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AC 4 TYR A 404 GLU A 413 -1 O TYR A 404 N PHE A 372 SHEET 4 AC 4 VAL A 397 LEU A 398 1 O VAL A 397 N PHE A 405 SHEET 1 AD 4 GLN A 347 LEU A 351 0 SHEET 2 AD 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AD 4 TYR A 404 GLU A 413 -1 O TYR A 404 N PHE A 372 SHEET 4 AD 4 TYR A 391 ASN A 393 -1 O LYS A 392 N LYS A 409 SHEET 1 AE 2 VAL A 397 LEU A 398 0 SHEET 2 AE 2 TYR A 404 GLU A 413 1 O PHE A 405 N VAL A 397 SHEET 1 AF 4 LYS A 386 THR A 387 0 SHEET 2 AF 4 TYR A 378 ASN A 383 -1 O ASN A 383 N LYS A 386 SHEET 3 AF 4 TYR A 423 VAL A 428 -1 O SER A 424 N THR A 382 SHEET 4 AF 4 HIS A 436 PHE A 441 -1 O THR A 437 N VAL A 427 SHEET 1 BA 7 LEU B 22 ILE B 24 0 SHEET 2 BA 7 GLN B 30 MET B 33 -1 O ARG B 32 N ILE B 23 SHEET 3 BA 7 LEU B 181 LEU B 183 -1 O LEU B 181 N VAL B 31 SHEET 4 BA 7 LYS B 63 ASP B 69 -1 O ASP B 69 N LYS B 182 SHEET 5 BA 7 GLN B 127 ASP B 133 -1 O ILE B 128 N VAL B 68 SHEET 6 BA 7 VAL B 138 ASN B 143 -1 O VAL B 138 N ASP B 133 SHEET 7 BA 7 SER B 149 PHE B 154 -1 O SER B 149 N ASN B 143 SHEET 1 BB 6 MET B 52 LEU B 54 0 SHEET 2 BB 6 LEU B 163 ASN B 168 -1 O PHE B 167 N VAL B 53 SHEET 3 BB 6 TRP B 76 ARG B 82 -1 O ASP B 77 N ASN B 168 SHEET 4 BB 6 PHE B 99 TRP B 105 -1 O TRP B 100 N VAL B 80 SHEET 5 BB 6 SER B 108 ALA B 111 -1 O SER B 108 N TRP B 105 SHEET 6 BB 6 THR B 117 THR B 118 -1 O THR B 117 N ALA B 111 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.05 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.00 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.26 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.41 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.42 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.43 CISPEP 1 MET A 373 PRO A 374 0 -6.50 CISPEP 2 SER B 114 PRO B 115 0 -6.28 CRYST1 45.458 186.185 124.875 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008008 0.00000