HEADER DNA-BINDING PROTEIN 21-FEB-13 3ZOB TITLE SOLUTION STRUCTURE OF CHICKEN ENGRAILED 2 HOMEODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN ENGRAILED-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEODOMAIN, RESIDUES 200-259; COMPND 5 SYNONYM: GG-EN-2, HOMEOBOX PROTEIN EN-2, ENGRAILED 2 HOMEOPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS DNA-BINDING PROTEIN, CELL-PENETRATING PEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.CARLIER,S.BALAYSSAC,F.X.CANTRELLE,L.KHEMTEMOURIAN,G.CHASSAING, AUTHOR 2 A.JOLIOT,O.LEQUIN REVDAT 1 28-AUG-13 3ZOB 0 JRNL AUTH L.CARLIER,S.BALAYSSAC,F.CANTRELLE,L.KHEMTEMOURIAN, JRNL AUTH 2 G.CHASSAING,A.JOLIOT,O.LEQUIN JRNL TITL INVESTIGATION OF HOMEODOMAIN MEMBRANE TRANSLOCATION JRNL TITL 2 PROPERTIES: INSIGHTS FROM THE STRUCTURE DETERMINATION OF JRNL TITL 3 ENGRAILED-2 HOMEODOMAIN IN AQUEOUS AND MEMBRANE-MIMETIC JRNL TITL 4 ENVIRONMENTS. JRNL REF BIOPHYS.J. V. 105 667 2013 JRNL REFN ISSN 0006-3495 JRNL PMID 23931315 JRNL DOI 10.1016/J.BPJ.2013.06.024 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS,KUSZEWSKI,TJANDRA,CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMIZATION WITH CHARMM22 REMARK 3 FORCE FIELD REMARK 4 REMARK 4 3ZOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-13. REMARK 100 THE PDBE ID CODE IS EBI-55913. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 4.7 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 1 MM PROTEIN, 50 MM SODIUM REMARK 210 SUCCINATE, 0.02% (W/V) SODIUM REMARK 210 AZIDE, 0.1 MM TSP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D 15N NOESY- REMARK 210 HSQC, 3D 13C NOESY-HMQC, REMARK 210 3D HNHA, 3D HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 14 PHE A 13 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 17 PHE A 13 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 19 PHE A 13 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 19 PHE A 13 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 -150.48 -104.53 REMARK 500 1 ALA A 4 -98.89 -87.60 REMARK 500 1 ARG A 10 -91.90 -115.26 REMARK 500 1 THR A 27 -71.81 -80.33 REMARK 500 1 LEU A 45 -158.57 -100.12 REMARK 500 1 LYS A 63 -167.11 -110.14 REMARK 500 1 ALA A 64 -72.45 -81.40 REMARK 500 1 GLN A 66 -105.67 68.26 REMARK 500 2 LYS A 7 -151.59 -130.87 REMARK 500 2 THR A 27 -70.00 -76.61 REMARK 500 2 LEU A 45 -163.81 -104.24 REMARK 500 2 ALA A 64 82.60 -161.98 REMARK 500 3 MET A 3 -167.04 -112.28 REMARK 500 3 ARG A 10 -73.43 -121.76 REMARK 500 3 ALA A 12 -147.16 -94.26 REMARK 500 3 ARG A 29 -74.20 -82.43 REMARK 500 3 LYS A 63 -87.95 -102.04 REMARK 500 3 ALA A 64 -23.96 -143.81 REMARK 500 3 GLN A 66 -75.11 -84.97 REMARK 500 4 ALA A 4 -95.48 -96.98 REMARK 500 4 SER A 5 -145.57 -126.29 REMARK 500 4 LYS A 7 -169.73 -116.25 REMARK 500 4 ARG A 10 -177.36 72.37 REMARK 500 4 THR A 11 77.69 -100.48 REMARK 500 4 TYR A 30 97.56 -68.95 REMARK 500 4 LEU A 45 -169.01 -105.70 REMARK 500 5 ALA A 12 -125.36 -102.73 REMARK 500 5 LEU A 45 -158.16 -102.43 REMARK 500 5 ASN A 46 -167.82 -110.64 REMARK 500 5 LYS A 62 -76.06 -110.65 REMARK 500 5 LYS A 63 -84.73 -119.37 REMARK 500 6 ALA A 4 -146.77 -153.03 REMARK 500 6 ARG A 10 -79.96 -95.53 REMARK 500 6 THR A 27 -72.18 -81.39 REMARK 500 6 ARG A 29 -60.76 -95.58 REMARK 500 6 GLU A 42 -71.13 -68.27 REMARK 500 6 LYS A 63 -143.82 -98.21 REMARK 500 6 GLN A 66 -155.56 76.99 REMARK 500 7 ALA A 4 -110.59 -141.01 REMARK 500 7 ASP A 6 -153.98 -128.18 REMARK 500 7 PRO A 9 49.96 -87.23 REMARK 500 7 ARG A 10 -108.68 62.22 REMARK 500 7 LEU A 45 -162.11 -101.32 REMARK 500 7 LYS A 60 30.45 -91.70 REMARK 500 7 ILE A 61 -76.76 -88.57 REMARK 500 7 LYS A 62 -49.52 -160.86 REMARK 500 8 ARG A 10 149.20 71.53 REMARK 500 8 LYS A 63 -160.73 -103.62 REMARK 500 8 ALA A 64 -75.47 -77.83 REMARK 500 8 GLN A 66 -71.81 -84.45 REMARK 500 REMARK 500 THIS ENTRY HAS 116 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG A 35 0.09 SIDE CHAIN REMARK 500 9 ARG A 35 0.08 SIDE CHAIN REMARK 500 11 ARG A 35 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. DBREF 3ZOB A 6 65 UNP Q05917 HME2_CHICK 200 259 SEQADV 3ZOB GLY A 1 UNP Q05917 EXPRESSION TAG SEQADV 3ZOB PRO A 2 UNP Q05917 EXPRESSION TAG SEQADV 3ZOB MET A 3 UNP Q05917 EXPRESSION TAG SEQADV 3ZOB ALA A 4 UNP Q05917 EXPRESSION TAG SEQADV 3ZOB SER A 5 UNP Q05917 EXPRESSION TAG SEQADV 3ZOB GLN A 66 UNP Q05917 EXPRESSION TAG SEQADV 3ZOB ALA A 67 UNP Q05917 EXPRESSION TAG SEQRES 1 A 67 GLY PRO MET ALA SER ASP LYS ARG PRO ARG THR ALA PHE SEQRES 2 A 67 THR ALA GLU GLN LEU GLN ARG LEU LYS ALA GLU PHE GLN SEQRES 3 A 67 THR ASN ARG TYR LEU THR GLU GLN ARG ARG GLN SER LEU SEQRES 4 A 67 ALA GLN GLU LEU GLY LEU ASN GLU SER GLN ILE LYS ILE SEQRES 5 A 67 TRP PHE GLN ASN LYS ARG ALA LYS ILE LYS LYS ALA THR SEQRES 6 A 67 GLN ALA HELIX 1 1 ALA A 15 THR A 27 1 13 HELIX 2 2 GLU A 33 GLU A 42 1 10 HELIX 3 3 GLU A 47 LYS A 60 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1