data_3ZQ8 # _entry.id 3ZQ8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZQ8 pdb_00003zq8 10.2210/pdb3zq8/pdb PDBE EBI-48031 ? ? WWPDB D_1290048031 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-18 2 'Structure model' 1 1 2013-07-24 3 'Structure model' 1 2 2019-03-06 4 'Structure model' 1 3 2023-03-29 5 'Structure model' 2 0 2023-11-15 6 'Structure model' 2 1 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Experimental preparation' 5 3 'Structure model' Other 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Atomic model' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' struct_conn 5 4 'Structure model' audit_author 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' struct_site 9 5 'Structure model' atom_site 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond 12 5 'Structure model' struct_conn 13 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_audit_author.identifier_ORCID' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_sf' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 11 5 'Structure model' '_atom_site.auth_atom_id' 12 5 'Structure model' '_atom_site.label_atom_id' 13 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZQ8 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-06-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1NT6 unspecified 'F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1JO3 unspecified 'GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1ALZ unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)' PDB 1GRM unspecified 'GRAMICIDIN A (NMR, 5 STRUCTURES)' PDB 1JO4 unspecified 'GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1BDW unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)' PDB 1NRU unspecified 'GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THEPRESENCE OF EXCESS NA+ (NMR)' PDB 1W5U unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)' PDB 1TKQ unspecified 'SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN IN AMEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE IN THE PRESENCE OFCSCL' PDB 1MAG unspecified 'GRAMICIDIN A IN HYDRATED DMPC BILAYERS, SOLID STATE NMR' PDB 2IZQ unspecified 'GRAMICIDIN D COMPLEX WITH KI' PDB 1C4D unspecified 'GRAMICIDIN CSCL COMPLEX' PDB 1AV2 unspecified 'GRAMICIDIN A/CSCL COMPLEX, ACTIVE AS A DIMER' PDB 1KQE unspecified 'SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A INBENZENE/ACETONE 10:1' PDB 1MIC unspecified 'GRAMICIDIN A: LEFT-HANDED PARALLEL DOUBLE HELICAL FORM IN METHANOL IN THE PRESENCE OF CACL2, NMR, 20 STRUCTURES' PDB 1NT5 unspecified 'F1-GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1AL4 unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (N- PROPANOL SOLVATE)' PDB 1GMK unspecified 'GRAMICIDIN/KSCN COMPLEX' PDB 1NG8 unspecified 'G15-GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1NRM unspecified 'GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES (NMR)' PDB 1JNO unspecified 'GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES (NMR)' PDB 1ALX unspecified 'GRAMICIDIN D FROM BACILLUS BREVIS (METHANOL SOLVATE)' PDB 2XDC unspecified 'STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A LIPID CUBIC PHASE.' PDB 2Y6N unspecified 'STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A 8.8 MONOACYLGLYCEROL LIPID CUBIC PHASE.' PDB 2Y5M unspecified 'STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A 7.7 MONOACYLGLYCEROL LIPID CUBIC PHASE.' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hoefer, N.' 1 ? 'Aragao, D.' 2 0000-0002-6551-4657 'Caffrey, M.' 3 ? # _citation.id primary _citation.title 'Crystallization of Gramicidin from a Monovaccenin Lipidic Cubic Phase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoefer, N.' 1 ? primary 'Aragao, D.' 2 ? primary 'Caffrey, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'VAL-GRAMICIDIN A' 1882.294 4 ? ? ? ? 2 non-polymer syn MONOVACCENIN 356.540 3 ? ? ? ? 3 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GRAMICIDIN D' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)' _entity_poly.pdbx_seq_one_letter_code_can VGALAVVVWLWLWLWX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 MONOVACCENIN MVC 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FVA n 1 2 GLY n 1 3 ALA n 1 4 DLE n 1 5 ALA n 1 6 DVA n 1 7 VAL n 1 8 DVA n 1 9 TRP n 1 10 DLE n 1 11 TRP n 1 12 DLE n 1 13 TRP n 1 14 DLE n 1 15 TRP n 1 16 ETA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'BREVIBACILLUS BREVIS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1393 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc 8246 _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 ETA 'L-peptide COOH carboxy terminus' . ETHANOLAMINE ? 'C2 H7 N O' 61.083 FVA 'L-peptide linking' n N-formyl-L-valine ? 'C6 H11 N O3' 145.156 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 MVC non-polymer . MONOVACCENIN '11.7 MAG' 'C21 H40 O4' 356.540 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FVA 1 1 1 FVA FVA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DLE 4 4 4 DLE DLE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 DVA 6 6 6 DVA DVA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 DLE 10 10 10 DLE DLE A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 DLE 12 12 12 DLE DLE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 DLE 14 14 14 DLE DLE A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ETA 16 16 16 ETA ETA A . n B 1 1 FVA 1 1 1 FVA FVA B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 DLE 4 4 4 DLE DLE B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 DVA 6 6 6 DVA DVA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 TRP 9 9 9 TRP TRP B . n B 1 10 DLE 10 10 10 DLE DLE B . n B 1 11 TRP 11 11 11 TRP TRP B . n B 1 12 DLE 12 12 12 DLE DLE B . n B 1 13 TRP 13 13 13 TRP TRP B . n B 1 14 DLE 14 14 14 DLE DLE B . n B 1 15 TRP 15 15 15 TRP TRP B . n B 1 16 ETA 16 16 16 ETA ETA B . n C 1 1 FVA 1 1 1 FVA FVA C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 DLE 4 4 4 DLE DLE C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 DVA 6 6 6 DVA DVA C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 DVA 8 8 8 DVA DVA C . n C 1 9 TRP 9 9 9 TRP TRP C . n C 1 10 DLE 10 10 10 DLE DLE C . n C 1 11 TRP 11 11 11 TRP TRP C . n C 1 12 DLE 12 12 12 DLE DLE C . n C 1 13 TRP 13 13 13 TRP TRP C . n C 1 14 DLE 14 14 14 DLE DLE C . n C 1 15 TRP 15 15 15 TRP TRP C . n C 1 16 ETA 16 16 16 ETA ETA C . n D 1 1 FVA 1 1 1 FVA FVA D . n D 1 2 GLY 2 2 2 GLY GLY D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 DLE 4 4 4 DLE DLE D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 DVA 6 6 6 DVA DVA D . n D 1 7 VAL 7 7 7 VAL VAL D . n D 1 8 DVA 8 8 8 DVA DVA D . n D 1 9 TRP 9 9 9 TRP TRP D . n D 1 10 DLE 10 10 10 DLE DLE D . n D 1 11 TRP 11 11 11 TRP TRP D . n D 1 12 DLE 12 12 12 DLE DLE D . n D 1 13 TRP 13 13 13 TRP TRP D . n D 1 14 DLE 14 14 14 DLE DLE D . n D 1 15 TRP 15 15 15 TRP TRP D . n D 1 16 ETA 16 16 16 ETA ETA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MVC 1 1016 1016 MVC MVC C . F 2 MVC 1 1017 1017 MVC MVC C . G 2 MVC 1 1018 1018 MVC MVC C . H 3 HOH 1 2001 2001 HOH HOH C . H 3 HOH 2 2002 2002 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 C MVC 1016 ? C18 ? E MVC 1 C18 2 1 N 1 C MVC 1016 ? C19 ? E MVC 1 C19 3 1 N 1 C MVC 1017 ? C17 ? F MVC 1 C17 4 1 N 1 C MVC 1017 ? C9 ? F MVC 1 C9 5 1 N 1 C MVC 1017 ? C8 ? F MVC 1 C8 6 1 N 1 C MVC 1017 ? C16 ? F MVC 1 C16 7 1 N 1 C MVC 1017 ? C10 ? F MVC 1 C10 8 1 N 1 C MVC 1017 ? C7 ? F MVC 1 C7 9 1 N 1 C MVC 1017 ? C15 ? F MVC 1 C15 10 1 N 1 C MVC 1017 ? C11 ? F MVC 1 C11 11 1 N 1 C MVC 1017 ? C6 ? F MVC 1 C6 12 1 N 1 C MVC 1017 ? C14 ? F MVC 1 C14 13 1 N 1 C MVC 1017 ? C12 ? F MVC 1 C12 14 1 N 1 C MVC 1017 ? C13 ? F MVC 1 C13 15 1 N 1 C MVC 1017 ? C18 ? F MVC 1 C18 16 1 N 1 C MVC 1017 ? C19 ? F MVC 1 C19 17 1 N 1 C MVC 1018 ? C17 ? G MVC 1 C17 18 1 N 1 C MVC 1018 ? C9 ? G MVC 1 C9 19 1 N 1 C MVC 1018 ? C8 ? G MVC 1 C8 20 1 N 1 C MVC 1018 ? C16 ? G MVC 1 C16 21 1 N 1 C MVC 1018 ? C10 ? G MVC 1 C10 22 1 N 1 C MVC 1018 ? C7 ? G MVC 1 C7 23 1 N 1 C MVC 1018 ? C15 ? G MVC 1 C15 24 1 N 1 C MVC 1018 ? C11 ? G MVC 1 C11 25 1 N 1 C MVC 1018 ? C6 ? G MVC 1 C6 26 1 N 1 C MVC 1018 ? C14 ? G MVC 1 C14 27 1 N 1 C MVC 1018 ? C12 ? G MVC 1 C12 28 1 N 1 C MVC 1018 ? C5 ? G MVC 1 C5 29 1 N 1 C MVC 1018 ? C13 ? G MVC 1 C13 30 1 N 1 C MVC 1018 ? C18 ? G MVC 1 C18 31 1 N 1 C MVC 1018 ? C19 ? G MVC 1 C19 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 3ZQ8 _cell.length_a 23.960 _cell.length_b 41.981 _cell.length_c 32.429 _cell.angle_alpha 90.00 _cell.angle_beta 107.25 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZQ8 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 3ZQ8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 40.6 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1M LITHIUM SULFATE, 10 MM NICKEL CHLORIDE, 0.1 M TRIS HCL, PH 8.5, LIPIDIC CUBIC PHASE OF MONOVACCENIN (11.7 MAG)' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-10-04 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CHANNEL-CUT DOUBLE-CRYSTAL SILICON 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.93950 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZQ8 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 22.90 _reflns.d_resolution_high 1.70 _reflns.number_obs 6612 _reflns.number_all ? _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.00 _reflns.B_iso_Wilson_estimate 15.8 _reflns.pdbx_redundancy 4.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.75 _reflns_shell.percent_possible_all 78.9 _reflns_shell.Rmerge_I_obs 0.25 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.00 _reflns_shell.pdbx_redundancy 3.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZQ8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6306 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.88 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 96.89 _refine.ls_R_factor_obs 0.16823 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16622 _refine.ls_R_factor_R_free 0.21118 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 306 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 17.281 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.03 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2XDC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.119 _refine.pdbx_overall_ESU_R_Free 0.117 _refine.overall_SU_ML 0.066 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.994 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 544 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 590 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 22.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 664 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.828 1.904 ? 906 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.934 5.000 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.113 20.000 ? 18 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.357 15.000 ? 27 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.158 0.200 ? 101 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.017 0.020 ? 440 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.646 1.500 ? 337 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.600 2.000 ? 521 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.480 3.000 ? 327 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.062 4.500 ? 382 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.701 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.number_reflns_R_work 352 _refine_ls_shell.R_factor_R_work 0.200 _refine_ls_shell.percent_reflns_obs 78.91 _refine_ls_shell.R_factor_R_free 0.242 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.993820 _struct_ncs_oper.matrix[1][2] -0.080230 _struct_ncs_oper.matrix[1][3] -0.076770 _struct_ncs_oper.matrix[2][1] 0.049970 _struct_ncs_oper.matrix[2][2] -0.940510 _struct_ncs_oper.matrix[2][3] 0.336060 _struct_ncs_oper.matrix[3][1] -0.099160 _struct_ncs_oper.matrix[3][2] 0.330140 _struct_ncs_oper.matrix[3][3] 0.938710 _struct_ncs_oper.vector[1] -2.15780 _struct_ncs_oper.vector[2] -8.08284 _struct_ncs_oper.vector[3] 2.41558 # _database_PDB_matrix.entry_id 3ZQ8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3ZQ8 _struct.title 'STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A monovaccenin LIPID CUBIC PHASE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZQ8 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, ION CHANNEL, MESOPHASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00243 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00243 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ZQ8 A 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 2 1 3ZQ8 B 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 3 1 3ZQ8 C 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 4 1 3ZQ8 D 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7450 ? 1 MORE -55.2 ? 1 'SSA (A^2)' 4610 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FVA 1 C ? ? ? 1_555 A GLY 2 N ? ? A FVA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A ALA 3 C ? ? ? 1_555 A DLE 4 N ? ? A ALA 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A DLE 4 C ? ? ? 1_555 A ALA 5 N ? ? A DLE 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A ALA 5 C ? ? ? 1_555 A DVA 6 N ? ? A ALA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A DVA 6 C ? ? ? 1_555 A VAL 7 N ? ? A DVA 6 A VAL 7 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A VAL 7 C ? ? ? 1_555 A DVA 8 N ? ? A VAL 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? A DVA 8 C ? ? ? 1_555 A TRP 9 N ? ? A DVA 8 A TRP 9 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale8 covale both ? A TRP 9 C ? ? ? 1_555 A DLE 10 N ? ? A TRP 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? A DLE 10 C ? ? ? 1_555 A TRP 11 N ? ? A DLE 10 A TRP 11 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale10 covale both ? A TRP 11 C ? ? ? 1_555 A DLE 12 N ? ? A TRP 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale11 covale both ? A DLE 12 C ? ? ? 1_555 A TRP 13 N ? ? A DLE 12 A TRP 13 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? A TRP 13 C ? ? ? 1_555 A DLE 14 N ? ? A TRP 13 A DLE 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale13 covale both ? A DLE 14 C ? ? ? 1_555 A TRP 15 N ? ? A DLE 14 A TRP 15 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N ? ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale15 covale both ? B FVA 1 C ? ? ? 1_555 B GLY 2 N ? ? B FVA 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale16 covale both ? B ALA 3 C ? ? ? 1_555 B DLE 4 N ? ? B ALA 3 B DLE 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale17 covale both ? B DLE 4 C ? ? ? 1_555 B ALA 5 N ? ? B DLE 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale18 covale both ? B ALA 5 C ? ? ? 1_555 B DVA 6 N ? ? B ALA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale19 covale both ? B DVA 6 C ? ? ? 1_555 B VAL 7 N ? ? B DVA 6 B VAL 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale20 covale both ? B VAL 7 C ? ? ? 1_555 B DVA 8 N ? ? B VAL 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale21 covale both ? B DVA 8 C ? ? ? 1_555 B TRP 9 N ? ? B DVA 8 B TRP 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale22 covale both ? B TRP 9 C ? ? ? 1_555 B DLE 10 N ? ? B TRP 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale23 covale both ? B DLE 10 C ? ? ? 1_555 B TRP 11 N ? ? B DLE 10 B TRP 11 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale24 covale both ? B TRP 11 C ? ? ? 1_555 B DLE 12 N ? ? B TRP 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale25 covale both ? B DLE 12 C ? ? ? 1_555 B TRP 13 N ? ? B DLE 12 B TRP 13 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale26 covale both ? B TRP 13 C ? ? ? 1_555 B DLE 14 N ? ? B TRP 13 B DLE 14 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale27 covale both ? B DLE 14 C ? ? ? 1_555 B TRP 15 N ? ? B DLE 14 B TRP 15 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale28 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N ? ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale29 covale both ? C FVA 1 C ? ? ? 1_555 C GLY 2 N ? ? C FVA 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale30 covale both ? C ALA 3 C ? ? ? 1_555 C DLE 4 N ? ? C ALA 3 C DLE 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale31 covale both ? C DLE 4 C ? ? ? 1_555 C ALA 5 N ? ? C DLE 4 C ALA 5 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale32 covale both ? C ALA 5 C ? ? ? 1_555 C DVA 6 N ? ? C ALA 5 C DVA 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale33 covale both ? C DVA 6 C ? ? ? 1_555 C VAL 7 N ? ? C DVA 6 C VAL 7 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale34 covale both ? C VAL 7 C ? ? ? 1_555 C DVA 8 N ? ? C VAL 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale35 covale both ? C DVA 8 C ? ? ? 1_555 C TRP 9 N ? ? C DVA 8 C TRP 9 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale36 covale both ? C TRP 9 C ? ? ? 1_555 C DLE 10 N ? ? C TRP 9 C DLE 10 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale37 covale both ? C DLE 10 C ? ? ? 1_555 C TRP 11 N ? ? C DLE 10 C TRP 11 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale38 covale both ? C TRP 11 C ? ? ? 1_555 C DLE 12 N ? ? C TRP 11 C DLE 12 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale39 covale both ? C DLE 12 C ? ? ? 1_555 C TRP 13 N ? ? C DLE 12 C TRP 13 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale40 covale both ? C TRP 13 C ? ? ? 1_555 C DLE 14 N ? ? C TRP 13 C DLE 14 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale41 covale both ? C DLE 14 C ? ? ? 1_555 C TRP 15 N ? ? C DLE 14 C TRP 15 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale42 covale both ? C TRP 15 C ? ? ? 1_555 C ETA 16 N ? ? C TRP 15 C ETA 16 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale43 covale both ? D FVA 1 C ? ? ? 1_555 D GLY 2 N ? ? D FVA 1 D GLY 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale44 covale both ? D ALA 3 C ? ? ? 1_555 D DLE 4 N ? ? D ALA 3 D DLE 4 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale45 covale both ? D DLE 4 C ? ? ? 1_555 D ALA 5 N ? ? D DLE 4 D ALA 5 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale46 covale both ? D ALA 5 C ? ? ? 1_555 D DVA 6 N ? ? D ALA 5 D DVA 6 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale47 covale both ? D DVA 6 C ? ? ? 1_555 D VAL 7 N ? ? D DVA 6 D VAL 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale48 covale both ? D VAL 7 C ? ? ? 1_555 D DVA 8 N ? ? D VAL 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale49 covale both ? D DVA 8 C ? ? ? 1_555 D TRP 9 N ? ? D DVA 8 D TRP 9 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale50 covale both ? D TRP 9 C ? ? ? 1_555 D DLE 10 N ? ? D TRP 9 D DLE 10 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale51 covale both ? D DLE 10 C ? ? ? 1_555 D TRP 11 N ? ? D DLE 10 D TRP 11 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale52 covale both ? D TRP 11 C ? ? ? 1_555 D DLE 12 N ? ? D TRP 11 D DLE 12 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale53 covale both ? D DLE 12 C ? ? ? 1_555 D TRP 13 N B ? D DLE 12 D TRP 13 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale54 covale both ? D DLE 12 C ? ? ? 1_555 D TRP 13 N A ? D DLE 12 D TRP 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale55 covale both ? D TRP 13 C B ? ? 1_555 D DLE 14 N ? ? D TRP 13 D DLE 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale56 covale both ? D TRP 13 C A ? ? 1_555 D DLE 14 N ? ? D TRP 13 D DLE 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale57 covale both ? D DLE 14 C ? ? ? 1_555 D TRP 15 N ? ? D DLE 14 D TRP 15 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale58 covale both ? D TRP 15 C ? ? ? 1_555 D ETA 16 N B ? D TRP 15 D ETA 16 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale59 covale both ? D TRP 15 C ? ? ? 1_555 D ETA 16 N A ? D TRP 15 D ETA 16 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? CA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel CA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 3 ? DLE A 14 ? ALA A 3 DLE A 14 AA 2 ALA B 3 ? DLE B 14 ? ALA B 3 DLE B 14 CA 1 ALA C 3 ? DLE C 14 ? ALA C 3 DLE C 14 CA 2 ALA D 3 ? DLE D 14 ? ALA D 3 DLE D 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TRP A 13 ? N TRP A 13 O ALA B 3 ? O ALA B 3 CA 1 2 N TRP C 13 ? N TRP C 13 O ALA D 3 ? O ALA D 3 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C MVC 1016 ? 9 'BINDING SITE FOR RESIDUE MVC C 1016' AC2 Software C MVC 1017 ? 5 'BINDING SITE FOR RESIDUE MVC C 1017' AC3 Software C MVC 1018 ? 5 'BINDING SITE FOR RESIDUE MVC C 1018' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DVA A 6 ? DVA A 6 . ? 1_455 ? 2 AC1 9 TRP A 11 ? TRP A 11 . ? 1_455 ? 3 AC1 9 DLE A 12 ? DLE A 12 . ? 1_455 ? 4 AC1 9 DLE B 4 ? DLE B 4 . ? 1_455 ? 5 AC1 9 TRP B 9 ? TRP B 9 . ? 1_455 ? 6 AC1 9 FVA C 1 ? FVA C 1 . ? 1_556 ? 7 AC1 9 TRP C 13 ? TRP C 13 . ? 1_555 ? 8 AC1 9 HOH H . ? HOH C 2002 . ? 1_555 ? 9 AC1 9 TRP D 9 ? TRP D 9 . ? 1_555 ? 10 AC2 5 TRP A 13 ? TRP A 13 . ? 1_455 ? 11 AC2 5 TRP C 11 ? TRP C 11 . ? 1_555 ? 12 AC2 5 DLE C 12 ? DLE C 12 . ? 1_555 ? 13 AC2 5 DLE D 4 ? DLE D 4 . ? 1_555 ? 14 AC2 5 TRP D 9 ? TRP D 9 . ? 1_555 ? 15 AC3 5 TRP A 15 ? TRP A 15 . ? 1_454 ? 16 AC3 5 ETA A 16 ? ETA A 16 . ? 1_454 ? 17 AC3 5 FVA B 1 ? FVA B 1 . ? 1_454 ? 18 AC3 5 FVA C 1 ? FVA C 1 . ? 1_555 ? 19 AC3 5 TRP C 15 ? TRP C 15 . ? 1_454 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O B TRP 15 ? ? C B TRP 15 ? ? N B ETA 16 ? ? 132.75 122.70 10.05 1.60 Y 2 1 C B TRP 15 ? ? N B ETA 16 ? ? CA B ETA 16 ? ? 102.54 121.70 -19.16 2.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 5 ? ? -153.90 87.37 2 1 TRP A 11 ? ? -161.78 90.07 3 1 TRP A 13 ? ? -156.97 88.96 4 1 TRP A 15 ? ? -164.40 81.98 5 1 TRP B 13 ? ? -158.06 86.09 6 1 TRP C 11 ? ? -159.47 78.41 7 1 TRP C 13 ? ? -159.17 88.35 8 1 TRP C 15 ? ? -163.87 95.40 # _pdbx_molecule_features.prd_id PRD_000150 _pdbx_molecule_features.name 'GRAMICIDIN A' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN A IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 0). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000150 A 2 PRD_000150 B 3 PRD_000150 C 4 PRD_000150 D # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A FVA 1 A FVA 1 ? VAL N-FORMYL-L-VALINE 2 B FVA 1 B FVA 1 ? VAL N-FORMYL-L-VALINE 3 C FVA 1 C FVA 1 ? VAL N-FORMYL-L-VALINE 4 D FVA 1 D FVA 1 ? VAL N-FORMYL-L-VALINE # _pdbx_entry_details.entry_id 3ZQ8 _pdbx_entry_details.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND COLLECTIVELY CALLED GRAMICIDIN D HERE, GRAMICIDIN A IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: GRAMICIDIN A CHAIN: A, B, C, D, E, F COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 16 DESCRIPTION: GRAMICIDIN A IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 1) WITH ETHANOLAMINE AT THE C-TERM (RESIDUE 16) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DLE N N N N 14 DLE CA C N R 15 DLE CB C N N 16 DLE CG C N N 17 DLE CD1 C N N 18 DLE CD2 C N N 19 DLE C C N N 20 DLE O O N N 21 DLE OXT O N N 22 DLE H H N N 23 DLE H2 H N N 24 DLE HA H N N 25 DLE HB2 H N N 26 DLE HB3 H N N 27 DLE HG H N N 28 DLE HD11 H N N 29 DLE HD12 H N N 30 DLE HD13 H N N 31 DLE HD21 H N N 32 DLE HD22 H N N 33 DLE HD23 H N N 34 DLE HXT H N N 35 DVA N N N N 36 DVA CA C N R 37 DVA CB C N N 38 DVA CG1 C N N 39 DVA CG2 C N N 40 DVA C C N N 41 DVA O O N N 42 DVA OXT O N N 43 DVA H H N N 44 DVA H2 H N N 45 DVA HA H N N 46 DVA HB H N N 47 DVA HG11 H N N 48 DVA HG12 H N N 49 DVA HG13 H N N 50 DVA HG21 H N N 51 DVA HG22 H N N 52 DVA HG23 H N N 53 DVA HXT H N N 54 ETA CA C N N 55 ETA N N N N 56 ETA C C N N 57 ETA O O N N 58 ETA HA1 H N N 59 ETA HA2 H N N 60 ETA H H N N 61 ETA H2 H N N 62 ETA HB1 H N N 63 ETA HB2 H N N 64 ETA HO H N N 65 FVA C C N N 66 FVA N N N N 67 FVA O O N N 68 FVA CA C N S 69 FVA CB C N N 70 FVA CG1 C N N 71 FVA CG2 C N N 72 FVA H H N N 73 FVA HA H N N 74 FVA HB H N N 75 FVA HG11 H N N 76 FVA HG12 H N N 77 FVA HG13 H N N 78 FVA HG21 H N N 79 FVA HG22 H N N 80 FVA HG23 H N N 81 FVA O1 O N N 82 FVA CN C N N 83 FVA HN H N N 84 FVA OXT O N N 85 FVA HXT H N N 86 GLY N N N N 87 GLY CA C N N 88 GLY C C N N 89 GLY O O N N 90 GLY OXT O N N 91 GLY H H N N 92 GLY H2 H N N 93 GLY HA2 H N N 94 GLY HA3 H N N 95 GLY HXT H N N 96 HOH O O N N 97 HOH H1 H N N 98 HOH H2 H N N 99 MVC C17 C N N 100 MVC C9 C N N 101 MVC C8 C N N 102 MVC C16 C N N 103 MVC C10 C N N 104 MVC C7 C N N 105 MVC C24 C N N 106 MVC C15 C N N 107 MVC C11 C N N 108 MVC C6 C N N 109 MVC C14 C N N 110 MVC C12 C N N 111 MVC C5 C N N 112 MVC C13 C N N 113 MVC C4 C N N 114 MVC C3 C N N 115 MVC C21 C N N 116 MVC C22 C N R 117 MVC O19 O N N 118 MVC C1 C N N 119 MVC O25 O N N 120 MVC O23 O N N 121 MVC O20 O N N 122 MVC C18 C N N 123 MVC C19 C N N 124 MVC H101 H N N 125 MVC H102 H N N 126 MVC H91C H N N 127 MVC H92C H N N 128 MVC H111 H N N 129 MVC H112 H N N 130 MVC H81C H N N 131 MVC H82C H N N 132 MVC H171 H N N 133 MVC H172 H N N 134 MVC H161 H N N 135 MVC H162 H N N 136 MVC H12 H N N 137 MVC H71C H N N 138 MVC H72C H N N 139 MVC H241 H N N 140 MVC H242 H N N 141 MVC H22 H N N 142 MVC H151 H N N 143 MVC H152 H N N 144 MVC H13 H N N 145 MVC H61C H N N 146 MVC H62C H N N 147 MVC H141 H N N 148 MVC H142 H N N 149 MVC H51C H N N 150 MVC H52C H N N 151 MVC H41C H N N 152 MVC H42C H N N 153 MVC H31C H N N 154 MVC H32C H N N 155 MVC H211 H N N 156 MVC H212 H N N 157 MVC H20 H N N 158 MVC H23 H N N 159 MVC H181 H N N 160 MVC H182 H N N 161 MVC H191 H N N 162 MVC H192 H N N 163 MVC H193 H N N 164 TRP N N N N 165 TRP CA C N S 166 TRP C C N N 167 TRP O O N N 168 TRP CB C N N 169 TRP CG C Y N 170 TRP CD1 C Y N 171 TRP CD2 C Y N 172 TRP NE1 N Y N 173 TRP CE2 C Y N 174 TRP CE3 C Y N 175 TRP CZ2 C Y N 176 TRP CZ3 C Y N 177 TRP CH2 C Y N 178 TRP OXT O N N 179 TRP H H N N 180 TRP H2 H N N 181 TRP HA H N N 182 TRP HB2 H N N 183 TRP HB3 H N N 184 TRP HD1 H N N 185 TRP HE1 H N N 186 TRP HE3 H N N 187 TRP HZ2 H N N 188 TRP HZ3 H N N 189 TRP HH2 H N N 190 TRP HXT H N N 191 VAL N N N N 192 VAL CA C N S 193 VAL C C N N 194 VAL O O N N 195 VAL CB C N N 196 VAL CG1 C N N 197 VAL CG2 C N N 198 VAL OXT O N N 199 VAL H H N N 200 VAL H2 H N N 201 VAL HA H N N 202 VAL HB H N N 203 VAL HG11 H N N 204 VAL HG12 H N N 205 VAL HG13 H N N 206 VAL HG21 H N N 207 VAL HG22 H N N 208 VAL HG23 H N N 209 VAL HXT H N N 210 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DLE N CA sing N N 13 DLE N H sing N N 14 DLE N H2 sing N N 15 DLE CA CB sing N N 16 DLE CA C sing N N 17 DLE CA HA sing N N 18 DLE CB CG sing N N 19 DLE CB HB2 sing N N 20 DLE CB HB3 sing N N 21 DLE CG CD1 sing N N 22 DLE CG CD2 sing N N 23 DLE CG HG sing N N 24 DLE CD1 HD11 sing N N 25 DLE CD1 HD12 sing N N 26 DLE CD1 HD13 sing N N 27 DLE CD2 HD21 sing N N 28 DLE CD2 HD22 sing N N 29 DLE CD2 HD23 sing N N 30 DLE C O doub N N 31 DLE C OXT sing N N 32 DLE OXT HXT sing N N 33 DVA N CA sing N N 34 DVA N H sing N N 35 DVA N H2 sing N N 36 DVA CA CB sing N N 37 DVA CA C sing N N 38 DVA CA HA sing N N 39 DVA CB CG1 sing N N 40 DVA CB CG2 sing N N 41 DVA CB HB sing N N 42 DVA CG1 HG11 sing N N 43 DVA CG1 HG12 sing N N 44 DVA CG1 HG13 sing N N 45 DVA CG2 HG21 sing N N 46 DVA CG2 HG22 sing N N 47 DVA CG2 HG23 sing N N 48 DVA C O doub N N 49 DVA C OXT sing N N 50 DVA OXT HXT sing N N 51 ETA CA N sing N N 52 ETA CA C sing N N 53 ETA CA HA1 sing N N 54 ETA CA HA2 sing N N 55 ETA N H sing N N 56 ETA N H2 sing N N 57 ETA C O sing N N 58 ETA C HB1 sing N N 59 ETA C HB2 sing N N 60 ETA O HO sing N N 61 FVA O C doub N N 62 FVA C CA sing N N 63 FVA H N sing N N 64 FVA N CN sing N N 65 FVA N CA sing N N 66 FVA CB CA sing N N 67 FVA CA HA sing N N 68 FVA HB CB sing N N 69 FVA CB CG2 sing N N 70 FVA CB CG1 sing N N 71 FVA HG13 CG1 sing N N 72 FVA HG12 CG1 sing N N 73 FVA CG1 HG11 sing N N 74 FVA HG22 CG2 sing N N 75 FVA HG23 CG2 sing N N 76 FVA CG2 HG21 sing N N 77 FVA CN O1 doub N N 78 FVA HN CN sing N N 79 FVA C OXT sing N N 80 FVA OXT HXT sing N N 81 GLY N CA sing N N 82 GLY N H sing N N 83 GLY N H2 sing N N 84 GLY CA C sing N N 85 GLY CA HA2 sing N N 86 GLY CA HA3 sing N N 87 GLY C O doub N N 88 GLY C OXT sing N N 89 GLY OXT HXT sing N N 90 HOH O H1 sing N N 91 HOH O H2 sing N N 92 MVC C10 C9 sing N N 93 MVC C10 C11 sing N N 94 MVC C9 C8 sing N N 95 MVC C17 C16 sing N N 96 MVC C11 C12 sing N N 97 MVC C8 C7 sing N N 98 MVC C24 C22 sing N N 99 MVC C24 O25 sing N N 100 MVC C16 C15 sing N N 101 MVC C12 C13 doub N Z 102 MVC C7 C6 sing N N 103 MVC C15 C14 sing N N 104 MVC C13 C14 sing N N 105 MVC C6 C5 sing N N 106 MVC C5 C4 sing N N 107 MVC C4 C3 sing N N 108 MVC C3 C1 sing N N 109 MVC C21 C22 sing N N 110 MVC C21 O20 sing N N 111 MVC C22 O23 sing N N 112 MVC O19 C1 doub N N 113 MVC O25 C1 sing N N 114 MVC C17 C18 sing N N 115 MVC C18 C19 sing N N 116 MVC C10 H101 sing N N 117 MVC C10 H102 sing N N 118 MVC C9 H91C sing N N 119 MVC C9 H92C sing N N 120 MVC C11 H111 sing N N 121 MVC C11 H112 sing N N 122 MVC C8 H81C sing N N 123 MVC C8 H82C sing N N 124 MVC C17 H171 sing N N 125 MVC C17 H172 sing N N 126 MVC C16 H161 sing N N 127 MVC C16 H162 sing N N 128 MVC C12 H12 sing N N 129 MVC C7 H71C sing N N 130 MVC C7 H72C sing N N 131 MVC C24 H241 sing N N 132 MVC C24 H242 sing N N 133 MVC C22 H22 sing N N 134 MVC C15 H151 sing N N 135 MVC C15 H152 sing N N 136 MVC C13 H13 sing N N 137 MVC C6 H61C sing N N 138 MVC C6 H62C sing N N 139 MVC C14 H141 sing N N 140 MVC C14 H142 sing N N 141 MVC C5 H51C sing N N 142 MVC C5 H52C sing N N 143 MVC C4 H41C sing N N 144 MVC C4 H42C sing N N 145 MVC C3 H31C sing N N 146 MVC C3 H32C sing N N 147 MVC C21 H211 sing N N 148 MVC C21 H212 sing N N 149 MVC O20 H20 sing N N 150 MVC O23 H23 sing N N 151 MVC C18 H181 sing N N 152 MVC C18 H182 sing N N 153 MVC C19 H191 sing N N 154 MVC C19 H192 sing N N 155 MVC C19 H193 sing N N 156 TRP N CA sing N N 157 TRP N H sing N N 158 TRP N H2 sing N N 159 TRP CA C sing N N 160 TRP CA CB sing N N 161 TRP CA HA sing N N 162 TRP C O doub N N 163 TRP C OXT sing N N 164 TRP CB CG sing N N 165 TRP CB HB2 sing N N 166 TRP CB HB3 sing N N 167 TRP CG CD1 doub Y N 168 TRP CG CD2 sing Y N 169 TRP CD1 NE1 sing Y N 170 TRP CD1 HD1 sing N N 171 TRP CD2 CE2 doub Y N 172 TRP CD2 CE3 sing Y N 173 TRP NE1 CE2 sing Y N 174 TRP NE1 HE1 sing N N 175 TRP CE2 CZ2 sing Y N 176 TRP CE3 CZ3 doub Y N 177 TRP CE3 HE3 sing N N 178 TRP CZ2 CH2 doub Y N 179 TRP CZ2 HZ2 sing N N 180 TRP CZ3 CH2 sing Y N 181 TRP CZ3 HZ3 sing N N 182 TRP CH2 HH2 sing N N 183 TRP OXT HXT sing N N 184 VAL N CA sing N N 185 VAL N H sing N N 186 VAL N H2 sing N N 187 VAL CA C sing N N 188 VAL CA CB sing N N 189 VAL CA HA sing N N 190 VAL C O doub N N 191 VAL C OXT sing N N 192 VAL CB CG1 sing N N 193 VAL CB CG2 sing N N 194 VAL CB HB sing N N 195 VAL CG1 HG11 sing N N 196 VAL CG1 HG12 sing N N 197 VAL CG1 HG13 sing N N 198 VAL CG2 HG21 sing N N 199 VAL CG2 HG22 sing N N 200 VAL CG2 HG23 sing N N 201 VAL OXT HXT sing N N 202 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2XDC _pdbx_initial_refinement_model.details 'PDB ENTRY 2XDC' # _atom_sites.entry_id 3ZQ8 _atom_sites.fract_transf_matrix[1][1] 0.041736 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.012959 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023820 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032289 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_