HEADER TRANSCRIPTION/DNA 09-JUN-11 3ZQC TITLE STRUCTURE OF THE TRICHOMONAS VAGINALIS MYB3 DNA-BINDING DOMAIN BOUND TITLE 2 TO A PROMOTER SEQUENCE REVEALS A UNIQUE C-TERMINAL BETA-HAIRPIN TITLE 3 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYB3; COMPND 3 CHAIN: A, D, G, J; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 53-180; COMPND 5 SYNONYM: MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MRE-1; COMPND 9 CHAIN: B, E, H, K; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: MRE-1; COMPND 13 CHAIN: C, F, I, L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 12 ORGANISM_TAXID: 5722; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 16 ORGANISM_TAXID: 5722 KEYWDS TRANSCRIPTION-DNA COMPLEX, DNA-BINDING PROTEIN, NUCLEUS EXPDTA X-RAY DIFFRACTION AUTHOR S.-Y.WEI,Y.-C.LOU,J.-Y.TSAI,H.-M.HSU,J.-H.TAI,C.-D.HSIAO,C.CHEN REVDAT 2 20-DEC-23 3ZQC 1 REMARK REVDAT 1 18-APR-12 3ZQC 0 JRNL AUTH S.-Y.WEI,Y.-C.LOU,J.-Y.TSAI,M.R.HO,C.C.CHOU,M.RAJASEKARAN, JRNL AUTH 2 H.-M.HSU,J.-H.TAI,C.-D.HSIAO,C.CHEN JRNL TITL STRUCTURE OF THE TRICHOMONAS VAGINALIS MYB3 DNA-BINDING JRNL TITL 2 DOMAIN BOUND TO A PROMOTER SEQUENCE REVEALS A UNIQUE JRNL TITL 3 C-TERMINAL BETA-HAIRPIN CONFORMATION. JRNL REF NUCLEIC ACIDS RES. V. 40 449 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 21908401 JRNL DOI 10.1093/NAR/GKR707 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 258958.620 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.8 REMARK 3 NUMBER OF REFLECTIONS : 19482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2101 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE : 0.4860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 120 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.044 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3929 REMARK 3 NUCLEIC ACID ATOMS : 2600 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.58000 REMARK 3 B22 (A**2) : -7.02000 REMARK 3 B33 (A**2) : -20.56000 REMARK 3 B12 (A**2) : -4.40000 REMARK 3 B13 (A**2) : 40.62000 REMARK 3 B23 (A**2) : -3.64000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.75 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.54 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.78 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.340 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3ZQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H8A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 171 REMARK 465 ARG A 172 REMARK 465 LYS A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 ASP A 176 REMARK 465 VAL A 177 REMARK 465 PRO A 178 REMARK 465 LYS A 179 REMARK 465 LYS A 180 REMARK 465 LEU A 181 REMARK 465 GLU A 182 REMARK 465 LYS D 171 REMARK 465 ARG D 172 REMARK 465 LYS D 173 REMARK 465 ALA D 174 REMARK 465 ALA D 175 REMARK 465 ASP D 176 REMARK 465 VAL D 177 REMARK 465 PRO D 178 REMARK 465 LYS D 179 REMARK 465 LYS D 180 REMARK 465 LEU D 181 REMARK 465 GLU D 182 REMARK 465 LYS G 171 REMARK 465 ARG G 172 REMARK 465 LYS G 173 REMARK 465 ALA G 174 REMARK 465 ALA G 175 REMARK 465 ASP G 176 REMARK 465 VAL G 177 REMARK 465 PRO G 178 REMARK 465 LYS G 179 REMARK 465 LYS G 180 REMARK 465 LEU G 181 REMARK 465 GLU G 182 REMARK 465 ARG J 172 REMARK 465 LYS J 173 REMARK 465 ALA J 174 REMARK 465 ALA J 175 REMARK 465 ASP J 176 REMARK 465 VAL J 177 REMARK 465 PRO J 178 REMARK 465 LYS J 179 REMARK 465 LYS J 180 REMARK 465 LEU J 181 REMARK 465 GLU J 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 170 CA C O CB CG CD CE REMARK 470 LYS A 170 NZ REMARK 470 LYS D 170 CA C O CB CG CD CE REMARK 470 LYS D 170 NZ REMARK 470 LYS G 170 CA C O CB CG CD CE REMARK 470 LYS G 170 NZ REMARK 470 LYS J 171 CA C O CB CG CD CE REMARK 470 LYS J 171 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 DT C 32 OG SER D 158 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA F 18 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA I 18 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA L 18 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 73 39.41 -99.79 REMARK 500 ARG A 78 34.72 -79.72 REMARK 500 LEU A 83 72.49 41.38 REMARK 500 TRP A 95 -72.70 -66.21 REMARK 500 ALA A 107 176.54 -57.70 REMARK 500 SER A 125 51.14 -103.83 REMARK 500 THR A 138 -179.45 -66.74 REMARK 500 LYS A 152 56.78 -93.49 REMARK 500 ARG A 153 27.81 -166.47 REMARK 500 SER A 158 44.99 -97.03 REMARK 500 ASN A 159 18.87 -161.43 REMARK 500 GLN D 74 -51.92 -141.40 REMARK 500 TRP D 76 -13.28 -49.94 REMARK 500 LEU D 83 75.50 51.11 REMARK 500 ALA D 107 155.36 -34.48 REMARK 500 ASN D 159 81.14 49.93 REMARK 500 HIS D 160 106.99 -36.54 REMARK 500 GLN G 74 -68.68 -147.83 REMARK 500 HIS G 98 -48.68 -142.33 REMARK 500 VAL G 104 -178.26 -67.42 REMARK 500 LYS G 105 -33.95 -139.77 REMARK 500 HIS G 106 152.84 -42.69 REMARK 500 TRP G 108 105.70 -59.64 REMARK 500 SER G 125 65.15 -104.27 REMARK 500 LYS G 152 60.87 -118.89 REMARK 500 ARG G 153 13.47 -154.87 REMARK 500 PRO G 166 172.67 -55.88 REMARK 500 SER G 169 0.29 -51.30 REMARK 500 ASP J 62 -35.38 -39.24 REMARK 500 PRO J 73 70.19 -105.61 REMARK 500 GLN J 74 -52.91 -138.91 REMARK 500 LEU J 83 75.13 35.62 REMARK 500 ALA J 107 166.16 -47.69 REMARK 500 LYS J 122 -70.47 -53.68 REMARK 500 SER J 149 -65.55 -103.13 REMARK 500 SER J 151 -18.83 -47.11 REMARK 500 ARG J 153 27.85 -162.98 REMARK 500 PRO J 166 -171.61 -61.59 REMARK 500 LYS J 170 152.35 116.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH G2007 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH G2008 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH H2004 DISTANCE = 6.70 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. DBREF 3ZQC A 53 180 UNP A2D9X4 A2D9X4_TRIVA 53 180 DBREF 3ZQC B 1 16 PDB 3ZQC 3ZQC 1 16 DBREF 3ZQC C 17 32 PDB 3ZQC 3ZQC 17 32 DBREF 3ZQC D 53 180 UNP A2D9X4 A2D9X4_TRIVA 53 180 DBREF 3ZQC E 1 16 PDB 3ZQC 3ZQC 1 16 DBREF 3ZQC F 17 32 PDB 3ZQC 3ZQC 17 32 DBREF 3ZQC G 53 180 UNP A2D9X4 A2D9X4_TRIVA 53 180 DBREF 3ZQC H 1 16 PDB 3ZQC 3ZQC 1 16 DBREF 3ZQC I 17 32 PDB 3ZQC 3ZQC 17 32 DBREF 3ZQC J 53 180 UNP A2D9X4 A2D9X4_TRIVA 53 180 DBREF 3ZQC K 1 16 PDB 3ZQC 3ZQC 1 16 DBREF 3ZQC L 17 32 PDB 3ZQC 3ZQC 17 32 SEQADV 3ZQC MET A 52 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC LEU A 181 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC GLU A 182 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC MET D 52 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC LEU D 181 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC GLU D 182 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC MET G 52 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC LEU G 181 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC GLU G 182 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC MET J 52 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC LEU J 181 UNP A2D9X4 EXPRESSION TAG SEQADV 3ZQC GLU J 182 UNP A2D9X4 EXPRESSION TAG SEQRES 1 A 131 MET LYS GLY PRO PHE THR GLU ALA GLU ASP ASP LEU ILE SEQRES 2 A 131 ARG GLU TYR VAL LYS GLU ASN GLY PRO GLN ASN TRP PRO SEQRES 3 A 131 ARG ILE THR SER PHE LEU PRO ASN ARG SER PRO LYS GLN SEQRES 4 A 131 CYS ARG GLU ARG TRP PHE ASN HIS LEU ASP PRO ALA VAL SEQRES 5 A 131 VAL LYS HIS ALA TRP THR PRO GLU GLU ASP GLU THR ILE SEQRES 6 A 131 PHE ARG ASN TYR LEU LYS LEU GLY SER LYS TRP SER VAL SEQRES 7 A 131 ILE ALA LYS LEU ILE PRO GLY ARG THR ASP ASN ALA ILE SEQRES 8 A 131 LYS ASN ARG TRP ASN SER SER ILE SER LYS ARG ILE SER SEQRES 9 A 131 THR ASN SER ASN HIS LYS GLU ILE LEU LEU PRO ASP ARG SEQRES 10 A 131 SER LYS LYS ARG LYS ALA ALA ASP VAL PRO LYS LYS LEU SEQRES 11 A 131 GLU SEQRES 1 B 16 DA DA DG DA DT DA DA DC DG DA DT DA DT SEQRES 2 B 16 DT DT DA SEQRES 1 C 16 DT DA DA DA DT DA DT DC DG DT DT DA DT SEQRES 2 C 16 DC DT DT SEQRES 1 D 131 MET LYS GLY PRO PHE THR GLU ALA GLU ASP ASP LEU ILE SEQRES 2 D 131 ARG GLU TYR VAL LYS GLU ASN GLY PRO GLN ASN TRP PRO SEQRES 3 D 131 ARG ILE THR SER PHE LEU PRO ASN ARG SER PRO LYS GLN SEQRES 4 D 131 CYS ARG GLU ARG TRP PHE ASN HIS LEU ASP PRO ALA VAL SEQRES 5 D 131 VAL LYS HIS ALA TRP THR PRO GLU GLU ASP GLU THR ILE SEQRES 6 D 131 PHE ARG ASN TYR LEU LYS LEU GLY SER LYS TRP SER VAL SEQRES 7 D 131 ILE ALA LYS LEU ILE PRO GLY ARG THR ASP ASN ALA ILE SEQRES 8 D 131 LYS ASN ARG TRP ASN SER SER ILE SER LYS ARG ILE SER SEQRES 9 D 131 THR ASN SER ASN HIS LYS GLU ILE LEU LEU PRO ASP ARG SEQRES 10 D 131 SER LYS LYS ARG LYS ALA ALA ASP VAL PRO LYS LYS LEU SEQRES 11 D 131 GLU SEQRES 1 E 16 DA DA DG DA DT DA DA DC DG DA DT DA DT SEQRES 2 E 16 DT DT DA SEQRES 1 F 16 DT DA DA DA DT DA DT DC DG DT DT DA DT SEQRES 2 F 16 DC DT DT SEQRES 1 G 131 MET LYS GLY PRO PHE THR GLU ALA GLU ASP ASP LEU ILE SEQRES 2 G 131 ARG GLU TYR VAL LYS GLU ASN GLY PRO GLN ASN TRP PRO SEQRES 3 G 131 ARG ILE THR SER PHE LEU PRO ASN ARG SER PRO LYS GLN SEQRES 4 G 131 CYS ARG GLU ARG TRP PHE ASN HIS LEU ASP PRO ALA VAL SEQRES 5 G 131 VAL LYS HIS ALA TRP THR PRO GLU GLU ASP GLU THR ILE SEQRES 6 G 131 PHE ARG ASN TYR LEU LYS LEU GLY SER LYS TRP SER VAL SEQRES 7 G 131 ILE ALA LYS LEU ILE PRO GLY ARG THR ASP ASN ALA ILE SEQRES 8 G 131 LYS ASN ARG TRP ASN SER SER ILE SER LYS ARG ILE SER SEQRES 9 G 131 THR ASN SER ASN HIS LYS GLU ILE LEU LEU PRO ASP ARG SEQRES 10 G 131 SER LYS LYS ARG LYS ALA ALA ASP VAL PRO LYS LYS LEU SEQRES 11 G 131 GLU SEQRES 1 H 16 DA DA DG DA DT DA DA DC DG DA DT DA DT SEQRES 2 H 16 DT DT DA SEQRES 1 I 16 DT DA DA DA DT DA DT DC DG DT DT DA DT SEQRES 2 I 16 DC DT DT SEQRES 1 J 131 MET LYS GLY PRO PHE THR GLU ALA GLU ASP ASP LEU ILE SEQRES 2 J 131 ARG GLU TYR VAL LYS GLU ASN GLY PRO GLN ASN TRP PRO SEQRES 3 J 131 ARG ILE THR SER PHE LEU PRO ASN ARG SER PRO LYS GLN SEQRES 4 J 131 CYS ARG GLU ARG TRP PHE ASN HIS LEU ASP PRO ALA VAL SEQRES 5 J 131 VAL LYS HIS ALA TRP THR PRO GLU GLU ASP GLU THR ILE SEQRES 6 J 131 PHE ARG ASN TYR LEU LYS LEU GLY SER LYS TRP SER VAL SEQRES 7 J 131 ILE ALA LYS LEU ILE PRO GLY ARG THR ASP ASN ALA ILE SEQRES 8 J 131 LYS ASN ARG TRP ASN SER SER ILE SER LYS ARG ILE SER SEQRES 9 J 131 THR ASN SER ASN HIS LYS GLU ILE LEU LEU PRO ASP ARG SEQRES 10 J 131 SER LYS LYS ARG LYS ALA ALA ASP VAL PRO LYS LYS LEU SEQRES 11 J 131 GLU SEQRES 1 K 16 DA DA DG DA DT DA DA DC DG DA DT DA DT SEQRES 2 K 16 DT DT DA SEQRES 1 L 16 DT DA DA DA DT DA DT DC DG DT DT DA DT SEQRES 2 L 16 DC DT DT FORMUL 13 HOH *98(H2 O) HELIX 1 1 GLU A 58 ASN A 71 1 14 HELIX 2 2 TRP A 76 ILE A 79 1 4 HELIX 3 3 PRO A 88 HIS A 98 1 11 HELIX 4 4 PRO A 110 LYS A 122 1 13 HELIX 5 5 TRP A 127 ILE A 130 1 4 HELIX 6 6 ASP A 139 SER A 148 1 10 HELIX 7 7 SER A 151 ARG A 153 1 3 HELIX 8 8 GLU D 58 GLU D 70 1 13 HELIX 9 9 ARG D 78 SER D 81 1 4 HELIX 10 10 PRO D 88 ASN D 97 1 10 HELIX 11 11 PRO D 110 LYS D 122 1 13 HELIX 12 12 TRP D 127 LEU D 133 1 7 HELIX 13 13 ASP D 139 SER D 148 1 10 HELIX 14 14 GLU G 58 ASN G 71 1 14 HELIX 15 15 TRP G 76 THR G 80 1 5 HELIX 16 16 PRO G 88 ASN G 97 1 10 HELIX 17 17 PRO G 110 LYS G 122 1 13 HELIX 18 18 TRP G 127 ALA G 131 1 5 HELIX 19 19 ASP G 139 SER G 148 1 10 HELIX 20 20 ILE G 150 LYS G 152 1 3 HELIX 21 21 GLU J 58 ASN J 71 1 14 HELIX 22 22 TRP J 76 SER J 81 1 6 HELIX 23 23 PRO J 88 LEU J 99 1 12 HELIX 24 24 PRO J 110 LYS J 122 1 13 HELIX 25 25 TRP J 127 LEU J 133 1 7 HELIX 26 26 ASP J 139 SER J 151 1 13 SHEET 1 A 2 ILE D 154 THR D 156 0 SHEET 2 A 2 GLU D 162 LEU D 164 -1 O ILE D 163 N SER D 155 SHEET 1 B 2 ILE G 154 SER G 155 0 SHEET 2 B 2 ILE G 163 LEU G 164 -1 O ILE G 163 N SER G 155 SHEET 1 C 2 ILE J 154 THR J 156 0 SHEET 2 C 2 GLU J 162 LEU J 164 -1 O ILE J 163 N SER J 155 CRYST1 45.810 71.770 87.820 94.68 97.84 99.28 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021829 0.003567 0.003403 0.00000 SCALE2 0.000000 0.014118 0.001504 0.00000 SCALE3 0.000000 0.000000 0.011559 0.00000