HEADER TRANSCRIPTION 09-JUN-11 3ZQF TITLE STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH ANTIINDUCER TITLE 2 PEPTIDE-TAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON COMPND 3 TN10, TETRACYCLINE REPRESSOR PROTEIN CLASS D; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 1-187,188-208; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 1-187 ARE FROM VARIANT B, RESIDUES 188-208 COMPND 9 ARE FROM VARIANT D; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ANTI-INDUCER PEPTIDE TAP1; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562 KEYWDS TRANSCRIPTION, TETRACYCLINE REPRESSOR, TETR, INDUCERS, PEPTIDIC KEYWDS 2 EFFECTORS, ALLOSTERY EXPDTA X-RAY DIFFRACTION AUTHOR M.SEVVANA,D.GOEKE,C.STOECKLE,D.KASPAR,S.GRUBMUELLER,C.GOETZ,C.WIMMER, AUTHOR 2 C.BERENS,M.KLOTZSCHE,Y.A.MULLER,W.HILLEN REVDAT 4 20-DEC-23 3ZQF 1 REMARK REVDAT 3 15-MAR-17 3ZQF 1 SOURCE REVDAT 2 08-FEB-12 3ZQF 1 JRNL REVDAT 1 28-DEC-11 3ZQF 0 JRNL AUTH M.SEVVANA,C.GOETZ,D.GOEKE,C.WIMMER,C.BERENS,W.HILLEN, JRNL AUTH 2 Y.A.MULLER JRNL TITL AN EXCLUSIVE ALPHA/BETA CODE DIRECTS ALLOSTERY IN JRNL TITL 2 TETR-PEPTIDE COMPLEXES. JRNL REF J.MOL.BIOL. V. 416 46 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22178479 JRNL DOI 10.1016/J.JMB.2011.12.008 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.4520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1553 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.22000 REMARK 3 B22 (A**2) : 4.22000 REMARK 3 B33 (A**2) : -8.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.185 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1579 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2130 ; 2.366 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 7.522 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;38.233 ;23.718 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;22.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.725 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1181 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 969 ; 0.971 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1537 ; 1.871 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 610 ; 3.108 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 593 ; 4.921 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4050 24.3881 13.6423 REMARK 3 T TENSOR REMARK 3 T11: 0.6736 T22: 0.3941 REMARK 3 T33: 0.3570 T12: 0.1668 REMARK 3 T13: -0.2385 T23: -0.1011 REMARK 3 L TENSOR REMARK 3 L11: 4.7681 L22: 7.4594 REMARK 3 L33: 20.3016 L12: 2.2561 REMARK 3 L13: 8.7012 L23: -0.1348 REMARK 3 S TENSOR REMARK 3 S11: 1.1764 S12: 0.3503 S13: -0.7107 REMARK 3 S21: -0.0976 S22: -0.1891 S23: 0.3961 REMARK 3 S31: 1.5529 S32: 0.0501 S33: -0.9873 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7249 29.4533 15.3862 REMARK 3 T TENSOR REMARK 3 T11: 0.2986 T22: 0.2094 REMARK 3 T33: 0.2432 T12: -0.0540 REMARK 3 T13: -0.0838 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 4.9562 L22: 0.9596 REMARK 3 L33: 13.6885 L12: -1.1510 REMARK 3 L13: 3.3842 L23: -0.4831 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: -0.2355 S13: -0.3029 REMARK 3 S21: 0.0572 S22: -0.0341 S23: 0.0945 REMARK 3 S31: -0.2370 S32: -0.1540 S33: 0.0555 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6756 34.0153 36.6424 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.5872 REMARK 3 T33: 0.4274 T12: -0.0346 REMARK 3 T13: -0.0879 T23: 0.1191 REMARK 3 L TENSOR REMARK 3 L11: 0.8145 L22: 4.8482 REMARK 3 L33: 14.2759 L12: -0.9343 REMARK 3 L13: -0.7964 L23: 1.7866 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0262 S13: 0.0736 REMARK 3 S21: -0.3964 S22: 0.2767 S23: 0.8264 REMARK 3 S31: -0.2701 S32: -0.6658 S33: -0.3203 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9118 29.6082 41.7895 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: 0.3097 REMARK 3 T33: 0.1718 T12: 0.0824 REMARK 3 T13: -0.0393 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.3603 L22: 6.3898 REMARK 3 L33: 5.1757 L12: 0.2813 REMARK 3 L13: 0.2953 L23: -0.5009 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.1081 S13: -0.0135 REMARK 3 S21: 0.1768 S22: 0.1440 S23: -0.3660 REMARK 3 S31: 0.4923 S32: 0.3601 S33: -0.2174 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 16 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0562 43.5726 32.0505 REMARK 3 T TENSOR REMARK 3 T11: 0.5119 T22: 0.7627 REMARK 3 T33: 0.6107 T12: 0.1153 REMARK 3 T13: 0.0193 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 0.1778 L22: 29.4095 REMARK 3 L33: 15.7720 L12: 0.5106 REMARK 3 L13: 0.7316 L23: 3.0196 REMARK 3 S TENSOR REMARK 3 S11: -0.2716 S12: 0.3266 S13: -0.1452 REMARK 3 S21: -1.0998 S22: 0.8721 S23: 0.3955 REMARK 3 S31: -1.1352 S32: 0.9825 S33: -0.6005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ZQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.210 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.16 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NS8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 3 M NACL, 0.1 M BIS-TRIS, REMARK 280 PH 6. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 34.32500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.08000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.54000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.32500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.62000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.08000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 34.32500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 136.62000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 34.32500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.54000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 68.65000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 68 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 88 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 121 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 144 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 67 REMARK 465 SER A 68 REMARK 465 PRO A 69 REMARK 465 LEU A 70 REMARK 465 GLU A 71 REMARK 465 GLY A 72 REMARK 465 GLN A 152 REMARK 465 VAL A 153 REMARK 465 ALA A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 156 REMARK 465 GLU A 157 REMARK 465 ARG A 158 REMARK 465 GLU A 159 REMARK 465 THR A 160 REMARK 465 PRO A 161 REMARK 465 THR A 162 REMARK 465 THR A 163 REMARK 465 ASP A 164 REMARK 465 SER A 165 REMARK 465 GLN A 206 REMARK 465 ILE A 207 REMARK 465 VAL A 208 REMARK 465 LYS C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 166 CG SD CE REMARK 470 GLU C 4 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 117 OG1 THR A 121 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PRO A 167 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO A 167 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 PRO A 168 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 LEU C 6 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 -174.44 -171.71 REMARK 500 LEU A 79 -55.80 -27.49 REMARK 500 ASP A 95 19.50 57.69 REMARK 500 ALA A 203 -170.08 -56.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 166 PRO A 167 -146.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XGC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T -A(I)B OF REMARK 900 THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 2XPW RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH OXYTETRACYCLINE AND MAGNESIUM. REMARK 900 RELATED ID: 2X9D RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH ISO-7- CHLORTETRACYCLINE REMARK 900 RELATED ID: 1BJZ RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REMARK 900 REPRESSOR INDUCTION REMARK 900 RELATED ID: 3ZQG RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH ANTIINDUCER REMARK 900 PEPTIDE-TAP2 REMARK 900 RELATED ID: 3ZQH RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH INDUCER PEPTIDE- REMARK 900 TIP3 REMARK 900 RELATED ID: 2TRT RELATED DB: PDB REMARK 900 TETRACYCLINE REPRESSOR CLASS D REMARK 900 RELATED ID: 2XPV RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH MINOCYCLINE AND MG. REMARK 900 RELATED ID: 2VKV RELATED DB: PDB REMARK 900 TETR (BD) VARIANT L17G WITH REVERSE PHENOTYPE REMARK 900 RELATED ID: 1ORK RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D IN COMPLEX WITH 9-(N,N- DIMETHYLGLYCYLAMIDO)- REMARK 900 6-DEMETHYL-6-DEOXY-TETRACYCLINE REMARK 900 RELATED ID: 2XGE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T -A(A)B OF REMARK 900 THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 2X6O RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D IN COMPLEX WITH 7-CHLOR-2- CYANO-ISO- REMARK 900 TETRACYCLINE REMARK 900 RELATED ID: 1A6I RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D VARIANT REMARK 900 RELATED ID: 2VKE RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D COMPLEXED WITH COBALT AND TETRACYCLINE REMARK 900 RELATED ID: 1QPI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX REMARK 900 RELATED ID: 2XGD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HOMODIMERIC VARIANT T- A(L)A(L) OF REMARK 900 THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 1DU7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TET REPRESSOR CLASS D WITH 4- EPI- TETRACYCLINE REMARK 900 RELATED ID: 2XRL RELATED DB: PDB REMARK 900 TET-REPRESSOR CLASS D T103A WITH DOXYCYCLINE REMARK 900 RELATED ID: 2XPT RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM. REMARK 900 RELATED ID: 2XPU RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE. REMARK 900 RELATED ID: 2XB5 RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH 7- IODOTETRACYCLINE REMARK 900 RELATED ID: 2XPS RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM REMARK 900 RELATED ID: 3ZQI RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH INDUCER PEPTIDE- REMARK 900 TIP2 REMARK 900 RELATED ID: 1BJ0 RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REMARK 900 REPRESSOR INDUCTION REMARK 900 RELATED ID: 2TCT RELATED DB: PDB REMARK 900 THE COMPLEX FORMED BETWEEN TET REPRESSOR AND TETRACYCLINE-MG2+ REMARK 900 REVEALS MECHANISM OF ANTIBIOTIC RESISTANCE REMARK 900 RELATED ID: 1BJY RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REMARK 900 REPRESSOR INDUCTION DBREF 3ZQF A 1 187 UNP P04483 TETR2_ECOLI 1 187 DBREF 3ZQF A 188 208 UNP P0ACT4 TETR4_ECOLI 188 208 DBREF 3ZQF C 1 16 PDB 3ZQF 3ZQF 1 16 SEQADV 3ZQF SER A 68 UNP P04483 CYS 68 ENGINEERED MUTATION SEQADV 3ZQF ASN A 88 UNP P04483 CYS 88 ENGINEERED MUTATION SEQADV 3ZQF THR A 121 UNP P04483 CYS 121 ENGINEERED MUTATION SEQADV 3ZQF SER A 144 UNP P04483 CYS 144 ENGINEERED MUTATION SEQRES 1 A 208 MET SER ARG LEU ASP LYS SER LYS VAL ILE ASN SER ALA SEQRES 2 A 208 LEU GLU LEU LEU ASN GLU VAL GLY ILE GLU GLY LEU THR SEQRES 3 A 208 THR ARG LYS LEU ALA GLN LYS LEU GLY VAL GLU GLN PRO SEQRES 4 A 208 THR LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU SEQRES 5 A 208 ASP ALA LEU ALA ILE GLU MET LEU ASP ARG HIS HIS THR SEQRES 6 A 208 HIS PHE SER PRO LEU GLU GLY GLU SER TRP GLN ASP PHE SEQRES 7 A 208 LEU ARG ASN ASN ALA LYS SER PHE ARG ASN ALA LEU LEU SEQRES 8 A 208 SER HIS ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG SEQRES 9 A 208 PRO THR GLU LYS GLN TYR GLU THR LEU GLU ASN GLN LEU SEQRES 10 A 208 ALA PHE LEU THR GLN GLN GLY PHE SER LEU GLU ASN ALA SEQRES 11 A 208 LEU TYR ALA LEU SER ALA VAL GLY HIS PHE THR LEU GLY SEQRES 12 A 208 SER VAL LEU GLU ASP GLN GLU HIS GLN VAL ALA LYS GLU SEQRES 13 A 208 GLU ARG GLU THR PRO THR THR ASP SER MET PRO PRO LEU SEQRES 14 A 208 LEU ARG GLN ALA ILE GLU LEU PHE ASP HIS GLN GLY ALA SEQRES 15 A 208 GLU PRO ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG SEQRES 16 A 208 GLY PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL SEQRES 1 C 16 LYS ALA SER GLU GLY LEU ALA ARG VAL ALA ALA LEU ALA SEQRES 2 C 16 ARG SER ARG FORMUL 3 HOH *5(H2 O) HELIX 1 1 ASP A 5 LEU A 25 1 21 HELIX 2 2 THR A 26 GLY A 35 1 10 HELIX 3 3 GLU A 37 VAL A 45 1 9 HELIX 4 4 ASN A 47 HIS A 64 1 18 HELIX 5 5 SER A 74 LEU A 91 1 18 HELIX 6 6 ASP A 95 LEU A 101 1 7 HELIX 7 7 THR A 106 GLN A 122 1 17 HELIX 8 8 SER A 126 GLN A 149 1 24 HELIX 9 9 PRO A 167 GLY A 181 1 15 HELIX 10 10 GLY A 181 THR A 202 1 22 HELIX 11 11 GLY C 5 SER C 15 1 11 CISPEP 1 LEU A 204 LEU A 205 0 -10.33 CRYST1 68.650 68.650 182.160 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014567 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005490 0.00000