HEADER TRANSCRIPTION 09-JUN-11 3ZQG TITLE STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH ANTIINDUCER TITLE 2 PEPTIDE-TAP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON COMPND 3 TN10, TETRACYCLINE REPRESSOR PROTEIN CLASS D; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 1-187,188-208; COMPND 6 SYNONYM: TETRACYCLINE REPRESSOR; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: RESIDUES 1-187 ARE FROM VARIANT B, RESIDUES 188-208 COMPND 9 ARE FROM VARIANT D; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ANTI-INDUCER PEPTIDE TAP2; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562 KEYWDS TRANSCRIPTION, TETR, INDUCERS, PEPTIDIC EFFECTORS, ALLOSTERY EXPDTA X-RAY DIFFRACTION AUTHOR M.SEVVANA,D.GOEKE,C.STOECKLE,D.KASPAR,S.GRUBMUELLER,C.GOETZ,C.WIMMER, AUTHOR 2 C.BERENS,M.KLOTZSCHE,Y.A.MULLER,W.HILLEN REVDAT 4 20-DEC-23 3ZQG 1 REMARK REVDAT 3 15-MAR-17 3ZQG 1 SOURCE REVDAT 2 08-FEB-12 3ZQG 1 JRNL REVDAT 1 28-DEC-11 3ZQG 0 JRNL AUTH M.SEVVANA,C.GOETZ,D.GOEKE,C.WIMMER,C.BERENS,W.HILLEN, JRNL AUTH 2 Y.A.MULLER JRNL TITL AN EXCLUSIVE ALPHA/BETA CODE DIRECTS ALLOSTERY IN JRNL TITL 2 TETR-PEPTIDE COMPLEXES. JRNL REF J.MOL.BIOL. V. 416 46 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22178479 JRNL DOI 10.1016/J.JMB.2011.12.008 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 755 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.09000 REMARK 3 B22 (A**2) : 3.09000 REMARK 3 B33 (A**2) : -6.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1806 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2440 ; 1.972 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 219 ; 7.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;37.471 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;23.181 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;25.026 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1361 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1096 ; 0.969 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1753 ; 1.872 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 710 ; 2.755 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 687 ; 4.569 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9726 26.8379 17.4443 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.1335 REMARK 3 T33: 0.0703 T12: -0.0315 REMARK 3 T13: -0.0356 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 1.6424 L22: 1.1835 REMARK 3 L33: 7.8842 L12: -0.1786 REMARK 3 L13: 3.4913 L23: -0.3462 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: -0.0305 S13: -0.1182 REMARK 3 S21: -0.2130 S22: 0.0493 S23: 0.0475 REMARK 3 S31: 0.3454 S32: -0.2862 S33: -0.1808 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2916 34.5263 40.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.2644 REMARK 3 T33: 0.1171 T12: 0.0701 REMARK 3 T13: -0.0231 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 0.5307 L22: 2.5164 REMARK 3 L33: 5.3912 L12: -0.0565 REMARK 3 L13: 0.3240 L23: 1.9378 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.0909 S13: -0.0538 REMARK 3 S21: -0.0134 S22: 0.1757 S23: 0.3804 REMARK 3 S31: 0.0353 S32: -0.4271 S33: -0.1580 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 43.0472 18.8154 33.7862 REMARK 3 T TENSOR REMARK 3 T11: 0.5508 T22: 0.5894 REMARK 3 T33: 0.4842 T12: 0.1459 REMARK 3 T13: 0.0729 T23: -0.0985 REMARK 3 L TENSOR REMARK 3 L11: 5.2558 L22: 3.3618 REMARK 3 L33: 1.3057 L12: -2.1018 REMARK 3 L13: 1.6306 L23: -0.9266 REMARK 3 S TENSOR REMARK 3 S11: 0.0943 S12: 0.9728 S13: -0.5196 REMARK 3 S21: -0.5134 S22: -0.3234 S23: -0.2010 REMARK 3 S31: 0.5276 S32: 0.3537 S33: 0.2291 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4728 34.4720 53.3253 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.2171 REMARK 3 T33: 0.1398 T12: 0.0240 REMARK 3 T13: 0.0458 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 7.2036 L22: 8.1442 REMARK 3 L33: 3.5312 L12: 1.4049 REMARK 3 L13: -0.4548 L23: -0.1090 REMARK 3 S TENSOR REMARK 3 S11: 0.1871 S12: -0.4802 S13: 0.8225 REMARK 3 S21: 1.1044 S22: -0.0079 S23: 0.3463 REMARK 3 S31: -0.5130 S32: 0.1757 S33: -0.1793 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 16 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9205 44.5359 33.1153 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.3121 REMARK 3 T33: 0.0198 T12: 0.1132 REMARK 3 T13: 0.0242 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 11.3954 L22: 48.0812 REMARK 3 L33: 8.9270 L12: 5.0903 REMARK 3 L13: 1.6034 L23: 2.2907 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: -0.2300 S13: 0.0174 REMARK 3 S21: -1.2981 S22: 0.3401 S23: -0.4482 REMARK 3 S31: -0.6946 S32: 0.1743 S33: -0.2385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.950 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.82 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NS8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 3 M NACL, 0.1 M BIS-TRIS, REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 33.67500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.49500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.24750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.67500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.74250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.49500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 33.67500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 138.74250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 33.67500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.24750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.35000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 67.35000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 1 REMARK 465 GLY C 2 REMARK 465 GLU C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 19 CG GLU A 19 CD 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 103 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU A 205 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 66 55.78 -112.29 REMARK 500 GLU A 71 108.28 -47.25 REMARK 500 LEU A 204 -88.55 49.81 REMARK 500 GLN A 206 -156.61 -161.55 REMARK 500 ARG C 15 32.09 -87.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 SER A 2 129.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XGC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T -A(I)B OF REMARK 900 THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 2XPW RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH OXYTETRACYCLINE AND MAGNESIUM. REMARK 900 RELATED ID: 1BJZ RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REMARK 900 REPRESSOR INDUCTION REMARK 900 RELATED ID: 2X9D RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH ISO-7- CHLORTETRACYCLINE REMARK 900 RELATED ID: 2TRT RELATED DB: PDB REMARK 900 TETRACYCLINE REPRESSOR CLASS D REMARK 900 RELATED ID: 2XPV RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH MINOCYCLINE AND MG. REMARK 900 RELATED ID: 2VKV RELATED DB: PDB REMARK 900 TETR (BD) VARIANT L17G WITH REVERSE PHENOTYPE REMARK 900 RELATED ID: 1ORK RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D IN COMPLEX WITH 9-(N,N- DIMETHYLGLYCYLAMIDO)- REMARK 900 6-DEMETHYL-6-DEOXY-TETRACYCLINE REMARK 900 RELATED ID: 2XGE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T -A(A)B OF REMARK 900 THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 2X6O RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D IN COMPLEX WITH 7-CHLOR-2- CYANO-ISO- REMARK 900 TETRACYCLINE REMARK 900 RELATED ID: 1A6I RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D VARIANT REMARK 900 RELATED ID: 2VKE RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D COMPLEXED WITH COBALT AND TETRACYCLINE REMARK 900 RELATED ID: 1QPI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX REMARK 900 RELATED ID: 2XGD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HOMODIMERIC VARIANT T- A(L)A(L) OF REMARK 900 THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 1DU7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TET REPRESSOR CLASS D WITH 4- EPI- TETRACYCLINE REMARK 900 RELATED ID: 2XRL RELATED DB: PDB REMARK 900 TET-REPRESSOR CLASS D T103A WITH DOXYCYCLINE REMARK 900 RELATED ID: 2XPT RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM. REMARK 900 RELATED ID: 2XPU RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE. REMARK 900 RELATED ID: 2XB5 RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH 7- IODOTETRACYCLINE REMARK 900 RELATED ID: 1BJ0 RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REMARK 900 REPRESSOR INDUCTION REMARK 900 RELATED ID: 2XPS RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM REMARK 900 RELATED ID: 2TCT RELATED DB: PDB REMARK 900 THE COMPLEX FORMED BETWEEN TET REPRESSOR AND TETRACYCLINE- MG2+ REMARK 900 REVEALS MECHANISM OF ANTIBIOTIC RESISTANCE REMARK 900 RELATED ID: 1BJY RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REMARK 900 REPRESSOR INDUCTION REMARK 900 RELATED ID: 3ZQI RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH INDUCER PEPTIDE- REMARK 900 TIP2 REMARK 900 RELATED ID: 3ZQF RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH ANTIINDUCER REMARK 900 PEPTIDE-TAP1 REMARK 900 RELATED ID: 3ZQH RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH INDUCER PEPTIDE- REMARK 900 TIP3 DBREF 3ZQG A 1 187 UNP P04483 TETR2_ECOLX 1 187 DBREF 3ZQG A 188 208 UNP P0ACT4 TETR4_ECOLI 188 208 DBREF 3ZQG C 1 16 PDB 3ZQG 3ZQG 1 16 SEQADV 3ZQG SER A 68 UNP P04483 CYS 68 CONFLICT SEQADV 3ZQG ASN A 88 UNP P04483 CYS 88 CONFLICT SEQADV 3ZQG THR A 121 UNP P04483 CYS 121 CONFLICT SEQADV 3ZQG SER A 144 UNP P04483 CYS 144 CONFLICT SEQRES 1 A 208 MET SER ARG LEU ASP LYS SER LYS VAL ILE ASN SER ALA SEQRES 2 A 208 LEU GLU LEU LEU ASN GLU VAL GLY ILE GLU GLY LEU THR SEQRES 3 A 208 THR ARG LYS LEU ALA GLN LYS LEU GLY VAL GLU GLN PRO SEQRES 4 A 208 THR LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU SEQRES 5 A 208 ASP ALA LEU ALA ILE GLU MET LEU ASP ARG HIS HIS THR SEQRES 6 A 208 HIS PHE SER PRO LEU GLU GLY GLU SER TRP GLN ASP PHE SEQRES 7 A 208 LEU ARG ASN ASN ALA LYS SER PHE ARG ASN ALA LEU LEU SEQRES 8 A 208 SER HIS ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG SEQRES 9 A 208 PRO THR GLU LYS GLN TYR GLU THR LEU GLU ASN GLN LEU SEQRES 10 A 208 ALA PHE LEU THR GLN GLN GLY PHE SER LEU GLU ASN ALA SEQRES 11 A 208 LEU TYR ALA LEU SER ALA VAL GLY HIS PHE THR LEU GLY SEQRES 12 A 208 SER VAL LEU GLU ASP GLN GLU HIS GLN VAL ALA LYS GLU SEQRES 13 A 208 GLU ARG GLU THR PRO THR THR ASP SER MET PRO PRO LEU SEQRES 14 A 208 LEU ARG GLN ALA ILE GLU LEU PHE ASP HIS GLN GLY ALA SEQRES 15 A 208 GLU PRO ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG SEQRES 16 A 208 GLY PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL SEQRES 1 C 16 THR GLY GLU ARG GLY ARG TRP GLN VAL TRP GLY LEU ALA SEQRES 2 C 16 LYS ARG CYS FORMUL 3 HOH *28(H2 O) HELIX 1 1 ASP A 5 LEU A 25 1 21 HELIX 2 2 THR A 26 GLY A 35 1 10 HELIX 3 3 GLU A 37 VAL A 45 1 9 HELIX 4 4 ASN A 47 HIS A 64 1 18 HELIX 5 5 SER A 74 LEU A 91 1 18 HELIX 6 6 ASP A 95 LEU A 101 1 7 HELIX 7 7 THR A 106 GLN A 123 1 18 HELIX 8 8 SER A 126 LYS A 155 1 30 HELIX 9 9 PRO A 167 GLY A 181 1 15 HELIX 10 10 ALA A 182 LEU A 204 1 23 HELIX 11 11 ARG C 4 ARG C 15 1 12 CRYST1 67.350 67.350 184.990 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005406 0.00000