HEADER DNA BINDING PROTEIN 10-JUN-11 3ZQN TITLE CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION CORE DOMAIN TITLE 2 FROM A SPP1-LIKE BACTERIOPHAGE (CRYSTAL FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERMINASE SMALL SUBUNIT; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J; COMPND 4 FRAGMENT: OLIGOMERIZATION CORE DOMAIN, RESIDUES 53-120; COMPND 5 SYNONYM: G1P, SF6 SMALL TERMINASE G1P; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SF6; SOURCE 3 ORGANISM_TAXID: 10773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DNA-BINDING PROTEIN, MOLECULAR MOTOR, DNA PACKAGING, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.R.BUTTNER,M.CHECHIK,M.ORTIZ-LOMBARDIA,C.SMITS,V.CHECHIK,G.JESCHKE, AUTHOR 2 E.DYKEMAN,S.BENINI,J.C.ALONSO,A.A.ANTSON REVDAT 4 20-DEC-23 3ZQN 1 LINK REVDAT 3 15-FEB-12 3ZQN 1 JRNL REVDAT 2 18-JAN-12 3ZQN 1 JRNL REVDAT 1 28-DEC-11 3ZQN 0 JRNL AUTH C.R.BUTTNER,M.CHECHIK,M.ORTIZ-LOMBARDIA,C.SMITS,I.O.EBONG, JRNL AUTH 2 V.CHECHIK,G.JESCHKE,E.DYKEMAN,S.BENINI,C.V.ROBINSON, JRNL AUTH 3 J.C.ALONSO,A.A.ANTSON JRNL TITL STRUCTURAL BASIS FOR DNA RECOGNITION AND LOADING INTO A JRNL TITL 2 VIRAL PACKAGING MOTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 811 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22207627 JRNL DOI 10.1073/PNAS.1110270109 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2901 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5476 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5541 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3964 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7383 ; 1.093 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9775 ; 1.092 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 701 ; 5.248 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;39.776 ;24.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1246 ;12.824 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ; 9.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5957 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 936 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 3ZQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97160 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45661 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZQM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KCL, 0.05 M HEPES PH 7.5, 35 % REMARK 280 PENTAERYTHITOL PROPOXYLATE (5/4 PO/OH) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.82450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.82450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.43450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.82450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.82450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.43450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.82450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.82450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.43450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.82450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.82450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.43450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY C -4 REMARK 465 SER C -3 REMARK 465 GLY D -4 REMARK 465 SER D -3 REMARK 465 GLY E -4 REMARK 465 SER E -3 REMARK 465 GLY F -4 REMARK 465 SER F -3 REMARK 465 GLY G -4 REMARK 465 SER G -3 REMARK 465 GLY H -4 REMARK 465 SER H -3 REMARK 465 GLY I -4 REMARK 465 GLY J -4 REMARK 465 SER J -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 63 OE2 GLU J 75 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 64 NZ LYS F 100 5554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU E 61 CB GLU E 61 CG 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZQM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION CORE REMARK 900 DOMAIN FROM A SPP1-LIKE BACTERIOPHAGE (CRYSTAL FORM 1) REMARK 900 RELATED ID: 3ZQQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FULL-LENGTH SMALL TERMINASE FROM A SPP1- REMARK 900 LIKE BACTERIOPHAGE REMARK 900 RELATED ID: 3ZQO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION CORE REMARK 900 DOMAIN FROM A SPP1-LIKE BACTERIOPHAGE (CRYSTAL FORM 3) REMARK 900 RELATED ID: 3ZQP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION DOMAIN REMARK 900 FROM A SPP1-LIKE BACTERIOPHAGE DBREF 3ZQN A 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN B 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN C 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN D 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN E 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN F 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN G 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN H 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN I 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 DBREF 3ZQN J 53 120 UNP Q1EJR8 TERS_BPSF6 53 120 SEQADV 3ZQN GLY A -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER A -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS A -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE A -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY B -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER B -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS B -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE B -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY C -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER C -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS C -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE C -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY D -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER D -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS D -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE D -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY E -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER E -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS E -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE E -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY F -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER F -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS F -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE F -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY G -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER G -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS G -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE G -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY H -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER H -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS H -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE H -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY I -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER I -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS I -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE I -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN GLY J -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN SER J -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN HIS J -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQN MSE J -1 UNP Q1EJR8 EXPRESSION TAG SEQRES 1 A 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 A 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 A 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 A 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 A 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 A 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 B 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 B 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 B 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 B 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 B 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 B 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 C 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 C 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 C 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 C 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 C 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 C 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 D 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 D 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 D 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 D 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 D 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 D 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 E 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 E 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 E 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 E 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 E 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 E 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 F 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 F 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 F 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 F 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 F 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 F 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 G 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 G 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 G 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 G 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 G 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 G 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 H 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 H 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 H 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 H 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 H 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 H 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 I 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 I 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 I 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 I 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 I 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 I 72 LEU GLU LEU LEU GLY LYS ALA SEQRES 1 J 72 GLY SER HIS MSE ALA ARG ILE ASP ALA ARG LEU LYS GLU SEQRES 2 J 72 ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU VAL LEU SEQRES 3 J 72 GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU LYS GLU SEQRES 4 J 72 GLN VAL LEU MSE GLY ILE GLY LYS GLY ALA GLU THR LYS SEQRES 5 J 72 THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE LYS ALA SEQRES 6 J 72 LEU GLU LEU LEU GLY LYS ALA MODRES 3ZQN MSE A -1 MET SELENOMETHIONINE MODRES 3ZQN MSE A 91 MET SELENOMETHIONINE MODRES 3ZQN MSE B -1 MET SELENOMETHIONINE MODRES 3ZQN MSE B 91 MET SELENOMETHIONINE MODRES 3ZQN MSE C -1 MET SELENOMETHIONINE MODRES 3ZQN MSE C 91 MET SELENOMETHIONINE MODRES 3ZQN MSE D -1 MET SELENOMETHIONINE MODRES 3ZQN MSE D 91 MET SELENOMETHIONINE MODRES 3ZQN MSE E -1 MET SELENOMETHIONINE MODRES 3ZQN MSE E 91 MET SELENOMETHIONINE MODRES 3ZQN MSE F -1 MET SELENOMETHIONINE MODRES 3ZQN MSE F 91 MET SELENOMETHIONINE MODRES 3ZQN MSE G -1 MET SELENOMETHIONINE MODRES 3ZQN MSE G 91 MET SELENOMETHIONINE MODRES 3ZQN MSE H -1 MET SELENOMETHIONINE MODRES 3ZQN MSE H 91 MET SELENOMETHIONINE MODRES 3ZQN MSE I -1 MET SELENOMETHIONINE MODRES 3ZQN MSE I 91 MET SELENOMETHIONINE MODRES 3ZQN MSE J -1 MET SELENOMETHIONINE MODRES 3ZQN MSE J 91 MET SELENOMETHIONINE HET MSE A -1 8 HET MSE A 91 8 HET MSE B -1 8 HET MSE B 91 8 HET MSE C -1 8 HET MSE C 91 8 HET MSE D -1 8 HET MSE D 91 8 HET MSE E -1 8 HET MSE E 91 8 HET MSE F -1 8 HET MSE F 91 8 HET MSE G -1 8 HET MSE G 91 8 HET MSE H -1 8 HET MSE H 91 8 HET MSE I -1 8 HET MSE I 91 8 HET MSE J -1 8 HET MSE J 91 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 11 HOH *92(H2 O) HELIX 1 1 ASP A 56 ASN A 63 1 8 HELIX 2 2 GLN A 69 LEU A 82 1 14 HELIX 3 3 SER A 106 ALA A 120 1 15 HELIX 4 4 ASP B 56 ASN B 63 1 8 HELIX 5 5 GLN B 69 LEU B 82 1 14 HELIX 6 6 SER B 106 ALA B 120 1 15 HELIX 7 7 ASP C 56 ASN C 63 1 8 HELIX 8 8 GLN C 69 LEU C 82 1 14 HELIX 9 9 SER C 106 ALA C 120 1 15 HELIX 10 10 ASP D 56 ASN D 63 1 8 HELIX 11 11 GLN D 69 LEU D 82 1 14 HELIX 12 12 SER D 106 ALA D 120 1 15 HELIX 13 13 ASP E 56 ASN E 63 1 8 HELIX 14 14 GLN E 69 LEU E 82 1 14 HELIX 15 15 SER E 106 ALA E 120 1 15 HELIX 16 16 ASP F 56 ASN F 63 1 8 HELIX 17 17 GLN F 69 LEU F 82 1 14 HELIX 18 18 SER F 106 ALA F 120 1 15 HELIX 19 19 ASP G 56 ASN G 63 1 8 HELIX 20 20 GLN G 69 LEU G 82 1 14 HELIX 21 21 SER G 106 ALA G 120 1 15 HELIX 22 22 ASP H 56 ASN H 63 1 8 HELIX 23 23 GLN H 69 LEU H 82 1 14 HELIX 24 24 SER H 106 ALA H 120 1 15 HELIX 25 25 ASP I 56 ASN I 63 1 8 HELIX 26 26 GLN I 69 LEU I 82 1 14 HELIX 27 27 SER I 106 ALA I 120 1 15 HELIX 28 28 ASP J 56 ASN J 63 1 8 HELIX 29 29 GLN J 69 LEU J 82 1 14 HELIX 30 30 SER J 106 ALA J 120 1 15 SHEET 1 AA 2 LYS A 86 GLY A 94 0 SHEET 2 AA 2 ALA A 97 GLU A 104 -1 O ALA A 97 N ILE A 93 SHEET 1 BA 2 LYS B 86 GLY B 94 0 SHEET 2 BA 2 ALA B 97 GLU B 104 -1 O ALA B 97 N ILE B 93 SHEET 1 CA 2 LYS C 86 GLY C 94 0 SHEET 2 CA 2 ALA C 97 GLU C 104 -1 O ALA C 97 N ILE C 93 SHEET 1 DA 2 LYS D 86 GLY D 94 0 SHEET 2 DA 2 ALA D 97 GLU D 104 -1 O ALA D 97 N ILE D 93 SHEET 1 EA 2 LYS E 86 GLY E 94 0 SHEET 2 EA 2 ALA E 97 GLU E 104 -1 O ALA E 97 N ILE E 93 SHEET 1 FA 2 LYS F 86 GLY F 94 0 SHEET 2 FA 2 ALA F 97 GLU F 104 -1 O ALA F 97 N ILE F 93 SHEET 1 GA 2 LYS G 86 GLY G 94 0 SHEET 2 GA 2 ALA G 97 GLU G 104 -1 O ALA G 97 N ILE G 93 SHEET 1 HA 2 LYS H 86 GLY H 94 0 SHEET 2 HA 2 ALA H 97 GLU H 104 -1 O ALA H 97 N ILE H 93 SHEET 1 IA 2 LYS I 86 GLY I 94 0 SHEET 2 IA 2 ALA I 97 GLU I 104 -1 O ALA I 97 N ILE I 93 SHEET 1 JA 2 LYS J 86 GLY J 94 0 SHEET 2 JA 2 ALA J 97 GLU J 104 -1 O ALA J 97 N ILE J 93 LINK C HIS A -2 N MSE A -1 1555 1555 1.34 LINK C MSE A -1 N ALA A 53 1555 1555 1.34 LINK C LEU A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N GLY A 92 1555 1555 1.33 LINK C HIS B -2 N MSE B -1 1555 1555 1.34 LINK C MSE B -1 N ALA B 53 1555 1555 1.33 LINK C LEU B 90 N MSE B 91 1555 1555 1.33 LINK C MSE B 91 N GLY B 92 1555 1555 1.33 LINK C HIS C -2 N MSE C -1 1555 1555 1.33 LINK C MSE C -1 N ALA C 53 1555 1555 1.33 LINK C LEU C 90 N MSE C 91 1555 1555 1.33 LINK C MSE C 91 N GLY C 92 1555 1555 1.33 LINK C HIS D -2 N MSE D -1 1555 1555 1.33 LINK C MSE D -1 N ALA D 53 1555 1555 1.32 LINK C LEU D 90 N MSE D 91 1555 1555 1.32 LINK C MSE D 91 N GLY D 92 1555 1555 1.33 LINK C HIS E -2 N MSE E -1 1555 1555 1.34 LINK C MSE E -1 N ALA E 53 1555 1555 1.33 LINK C LEU E 90 N MSE E 91 1555 1555 1.33 LINK C MSE E 91 N GLY E 92 1555 1555 1.33 LINK C HIS F -2 N MSE F -1 1555 1555 1.33 LINK C MSE F -1 N ALA F 53 1555 1555 1.32 LINK C LEU F 90 N MSE F 91 1555 1555 1.32 LINK C MSE F 91 N GLY F 92 1555 1555 1.32 LINK C HIS G -2 N MSE G -1 1555 1555 1.33 LINK C MSE G -1 N ALA G 53 1555 1555 1.33 LINK C LEU G 90 N MSE G 91 1555 1555 1.34 LINK C MSE G 91 N GLY G 92 1555 1555 1.33 LINK C HIS H -2 N MSE H -1 1555 1555 1.33 LINK C MSE H -1 N ALA H 53 1555 1555 1.33 LINK C LEU H 90 N MSE H 91 1555 1555 1.32 LINK C MSE H 91 N GLY H 92 1555 1555 1.33 LINK C HIS I -2 N MSE I -1 1555 1555 1.34 LINK C MSE I -1 N ALA I 53 1555 1555 1.32 LINK C LEU I 90 N MSE I 91 1555 1555 1.32 LINK C MSE I 91 N GLY I 92 1555 1555 1.33 LINK C HIS J -2 N MSE J -1 1555 1555 1.34 LINK C MSE J -1 N ALA J 53 1555 1555 1.33 LINK C LEU J 90 N MSE J 91 1555 1555 1.32 LINK C MSE J 91 N GLY J 92 1555 1555 1.32 CRYST1 127.649 127.649 106.869 90.00 90.00 90.00 P 42 21 2 80 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009357 0.00000