HEADER DNA BINDING PROTEIN 10-JUN-11 3ZQQ TITLE CRYSTAL STRUCTURE OF THE FULL-LENGTH SMALL TERMINASE FROM A SPP1-LIKE TITLE 2 BACTERIOPHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERMINASE SMALL SUBUNIT; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SF6 SMALL TERMINASE G1P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SF6; SOURCE 3 ORGANISM_TAXID: 10773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DNA-BINDING PROTEIN, DNA PACKAGING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.R.BUTTNER,M.CHECHIK,M.ORTIZ-LOMBARDIA,C.SMITS,V.CHECHIK,G.JESCHKE, AUTHOR 2 E.DYKEMAN,S.BENINI,J.C.ALONSO,A.A.ANTSON REVDAT 4 20-DEC-23 3ZQQ 1 SHEET REVDAT 3 15-FEB-12 3ZQQ 1 JRNL REVDAT 2 18-JAN-12 3ZQQ 1 JRNL REVDAT 1 28-DEC-11 3ZQQ 0 JRNL AUTH C.R.BUTTNER,M.CHECHIK,M.ORTIZ-LOMBARDIA,C.SMITS,I.O.EBONG, JRNL AUTH 2 V.CHECHIK,G.JESCHKE,E.DYKEMAN,S.BENINI,C.V.ROBINSON, JRNL AUTH 3 J.C.ALONSO,A.A.ANTSON JRNL TITL STRUCTURAL BASIS FOR DNA RECOGNITION AND LOADING INTO A JRNL TITL 2 VIRAL PACKAGING MOTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 811 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22207627 JRNL DOI 10.1073/PNAS.1110270109 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 61.5 REMARK 3 NUMBER OF REFLECTIONS : 3308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 482 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2026 REMARK 3 BIN FREE R VALUE : 0.2011 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 220.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -86.76000 REMARK 3 B22 (A**2) : -86.76000 REMARK 3 B33 (A**2) : 173.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.002 REMARK 3 BOND ANGLES (DEGREES) : 0.660 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 207.1 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE THIRD DNA-BINDING DOMAIN (DBD OF REMARK 3 CHAIN B) IS NOT SUFFICIENTLY DEFINED IN THE ELECTRON DENSITY AND REMARK 3 WAS NOT MODELED. REMARK 4 REMARK 4 3ZQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3308 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.010 REMARK 200 RESOLUTION RANGE LOW (A) : 107.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 62.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 18.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2CMP AND 3ZQP REMARK 200 REMARK 200 REMARK: MR WAS PERFORMED USING THREE NEIGHBORING SUBUNITS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 8 % PEG 2000, 8 % PEG REMARK 280 550MME, 0.1 M TRIS PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 49.09200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.34328 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 107.93933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 49.09200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.34328 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 107.93933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 49.09200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.34328 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.93933 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 49.09200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.34328 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 107.93933 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 49.09200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.34328 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.93933 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 49.09200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.34328 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 107.93933 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.68656 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 215.87867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 56.68656 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 215.87867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 56.68656 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 215.87867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 56.68656 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 215.87867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 56.68656 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 215.87867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 56.68656 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 215.87867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 49.09200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -85.02984 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 98.18400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 61 REMARK 465 ILE A 62 REMARK 465 ASN A 63 REMARK 465 GLU A 64 REMARK 465 LYS A 65 REMARK 465 GLY A 142 REMARK 465 ASP A 143 REMARK 465 ALA A 144 REMARK 465 GLU A 145 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 PRO B 8 REMARK 465 LYS B 9 REMARK 465 GLN B 10 REMARK 465 GLU B 11 REMARK 465 ARG B 12 REMARK 465 PHE B 13 REMARK 465 ILE B 14 REMARK 465 GLU B 15 REMARK 465 GLU B 16 REMARK 465 TYR B 17 REMARK 465 PHE B 18 REMARK 465 ILE B 19 REMARK 465 ASN B 20 REMARK 465 ASP B 21 REMARK 465 MET B 22 REMARK 465 ASN B 23 REMARK 465 ALA B 24 REMARK 465 THR B 25 REMARK 465 LYS B 26 REMARK 465 ALA B 27 REMARK 465 ALA B 28 REMARK 465 ILE B 29 REMARK 465 ALA B 30 REMARK 465 ALA B 31 REMARK 465 GLY B 32 REMARK 465 TYR B 33 REMARK 465 SER B 34 REMARK 465 LYS B 35 REMARK 465 ASN B 36 REMARK 465 SER B 37 REMARK 465 ALA B 38 REMARK 465 SER B 39 REMARK 465 ALA B 40 REMARK 465 ILE B 41 REMARK 465 GLY B 42 REMARK 465 ALA B 43 REMARK 465 GLU B 44 REMARK 465 ASN B 45 REMARK 465 LEU B 46 REMARK 465 GLN B 47 REMARK 465 LYS B 48 REMARK 465 PRO B 49 REMARK 465 ALA B 50 REMARK 465 ILE B 51 REMARK 465 ARG B 52 REMARK 465 ALA B 53 REMARK 465 ARG B 54 REMARK 465 ILE B 55 REMARK 465 ASP B 56 REMARK 465 ALA B 57 REMARK 465 ARG B 58 REMARK 465 LEU B 59 REMARK 465 LYS B 60 REMARK 465 GLU B 61 REMARK 465 ILE B 62 REMARK 465 ASN B 63 REMARK 465 GLU B 64 REMARK 465 LYS B 65 REMARK 465 ASP B 143 REMARK 465 ALA B 144 REMARK 465 GLU B 145 REMARK 465 MET C -18 REMARK 465 GLY C -17 REMARK 465 SER C -16 REMARK 465 SER C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 SER C -8 REMARK 465 SER C -7 REMARK 465 GLY C -6 REMARK 465 LEU C -5 REMARK 465 VAL C -4 REMARK 465 PRO C -3 REMARK 465 ARG C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 GLU C 3 REMARK 465 PRO C 4 REMARK 465 GLU C 61 REMARK 465 ILE C 62 REMARK 465 ASN C 63 REMARK 465 GLU C 64 REMARK 465 ASP C 143 REMARK 465 ALA C 144 REMARK 465 GLU C 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 1.48 -67.79 REMARK 500 ASN A 20 23.70 -155.66 REMARK 500 ARG A 52 -79.06 -59.51 REMARK 500 LEU A 59 83.04 -66.64 REMARK 500 ALA A 70 -70.16 -51.69 REMARK 500 LYS A 95 -17.97 66.59 REMARK 500 THR A 99 -150.03 -106.07 REMARK 500 LYS A 100 42.49 -151.47 REMARK 500 ASN A 133 66.86 -178.77 REMARK 500 ASP A 140 -138.19 -174.45 REMARK 500 ILE B 67 135.25 65.92 REMARK 500 LYS B 95 -12.24 65.48 REMARK 500 GLU B 98 -167.70 -108.66 REMARK 500 THR B 132 -159.07 -138.32 REMARK 500 ASN B 133 82.09 -164.84 REMARK 500 VAL B 135 79.57 -108.84 REMARK 500 ILE B 137 83.50 -150.87 REMARK 500 VAL B 138 -177.61 -62.15 REMARK 500 ASP B 140 76.99 -102.89 REMARK 500 LEU C 6 96.58 49.41 REMARK 500 ASN C 20 33.92 -91.84 REMARK 500 ASP C 21 77.05 54.65 REMARK 500 MET C 22 11.30 51.81 REMARK 500 ALA C 30 31.45 -82.75 REMARK 500 ALA C 31 -33.50 -131.33 REMARK 500 ALA C 43 32.18 -71.45 REMARK 500 GLU C 44 -32.66 -133.61 REMARK 500 LYS C 66 -35.13 -151.59 REMARK 500 LEU C 68 97.89 -39.10 REMARK 500 GLN C 69 151.17 -47.99 REMARK 500 LYS C 95 -2.89 69.38 REMARK 500 SER C 106 160.52 -49.30 REMARK 500 ALA C 120 0.76 -67.45 REMARK 500 ASN C 133 66.42 -171.32 REMARK 500 SER C 141 -87.48 59.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZQN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION CORE REMARK 900 DOMAIN FROM A SPP1-LIKE BACTERIOPHAGE (CRYSTAL FORM 2) REMARK 900 RELATED ID: 3ZQP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION DOMAIN REMARK 900 FROM A SPP1-LIKE BACTERIOPHAGE REMARK 900 RELATED ID: 3ZQM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION CORE REMARK 900 DOMAIN FROM A SPP1-LIKE BACTERIOPHAGE (CRYSTAL FORM 1) REMARK 900 RELATED ID: 3ZQO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMALL TERMINASE OLIGOMERIZATION CORE REMARK 900 DOMAIN FROM A SPP1-LIKE BACTERIOPHAGE (CRYSTAL FORM 3) DBREF 3ZQQ A 1 145 UNP Q1EJR8 Q1EJR8_BPSF6 1 145 DBREF 3ZQQ B 1 145 UNP Q1EJR8 Q1EJR8_BPSF6 1 145 DBREF 3ZQQ C 1 145 UNP Q1EJR8 Q1EJR8_BPSF6 1 145 SEQADV 3ZQQ MET A -18 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY A -17 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER A -16 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER A -15 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS A -14 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS A -13 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS A -12 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS A -11 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS A -10 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS A -9 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER A -8 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER A -7 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY A -6 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ LEU A -5 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ VAL A -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ PRO A -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ ARG A -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY A -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER A 0 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ MET B -18 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY B -17 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER B -16 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER B -15 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS B -14 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS B -13 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS B -12 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS B -11 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS B -10 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS B -9 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER B -8 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER B -7 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY B -6 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ LEU B -5 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ VAL B -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ PRO B -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ ARG B -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY B -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER B 0 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ MET C -18 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY C -17 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER C -16 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER C -15 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS C -14 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS C -13 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS C -12 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS C -11 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS C -10 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ HIS C -9 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER C -8 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER C -7 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY C -6 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ LEU C -5 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ VAL C -4 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ PRO C -3 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ ARG C -2 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ GLY C -1 UNP Q1EJR8 EXPRESSION TAG SEQADV 3ZQQ SER C 0 UNP Q1EJR8 EXPRESSION TAG SEQRES 1 A 164 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 164 LEU VAL PRO ARG GLY SER MET LYS GLU PRO LYS LEU SER SEQRES 3 A 164 PRO LYS GLN GLU ARG PHE ILE GLU GLU TYR PHE ILE ASN SEQRES 4 A 164 ASP MET ASN ALA THR LYS ALA ALA ILE ALA ALA GLY TYR SEQRES 5 A 164 SER LYS ASN SER ALA SER ALA ILE GLY ALA GLU ASN LEU SEQRES 6 A 164 GLN LYS PRO ALA ILE ARG ALA ARG ILE ASP ALA ARG LEU SEQRES 7 A 164 LYS GLU ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU SEQRES 8 A 164 VAL LEU GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU SEQRES 9 A 164 LYS GLU GLN VAL LEU MET GLY ILE GLY LYS GLY ALA GLU SEQRES 10 A 164 THR LYS THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE SEQRES 11 A 164 LYS ALA LEU GLU LEU LEU GLY LYS ALA HIS ALA VAL PHE SEQRES 12 A 164 THR ASP LYS GLN LYS VAL GLU THR ASN GLN VAL ILE ILE SEQRES 13 A 164 VAL ASP ASP SER GLY ASP ALA GLU SEQRES 1 B 164 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 164 LEU VAL PRO ARG GLY SER MET LYS GLU PRO LYS LEU SER SEQRES 3 B 164 PRO LYS GLN GLU ARG PHE ILE GLU GLU TYR PHE ILE ASN SEQRES 4 B 164 ASP MET ASN ALA THR LYS ALA ALA ILE ALA ALA GLY TYR SEQRES 5 B 164 SER LYS ASN SER ALA SER ALA ILE GLY ALA GLU ASN LEU SEQRES 6 B 164 GLN LYS PRO ALA ILE ARG ALA ARG ILE ASP ALA ARG LEU SEQRES 7 B 164 LYS GLU ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU SEQRES 8 B 164 VAL LEU GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU SEQRES 9 B 164 LYS GLU GLN VAL LEU MET GLY ILE GLY LYS GLY ALA GLU SEQRES 10 B 164 THR LYS THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE SEQRES 11 B 164 LYS ALA LEU GLU LEU LEU GLY LYS ALA HIS ALA VAL PHE SEQRES 12 B 164 THR ASP LYS GLN LYS VAL GLU THR ASN GLN VAL ILE ILE SEQRES 13 B 164 VAL ASP ASP SER GLY ASP ALA GLU SEQRES 1 C 164 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 164 LEU VAL PRO ARG GLY SER MET LYS GLU PRO LYS LEU SER SEQRES 3 C 164 PRO LYS GLN GLU ARG PHE ILE GLU GLU TYR PHE ILE ASN SEQRES 4 C 164 ASP MET ASN ALA THR LYS ALA ALA ILE ALA ALA GLY TYR SEQRES 5 C 164 SER LYS ASN SER ALA SER ALA ILE GLY ALA GLU ASN LEU SEQRES 6 C 164 GLN LYS PRO ALA ILE ARG ALA ARG ILE ASP ALA ARG LEU SEQRES 7 C 164 LYS GLU ILE ASN GLU LYS LYS ILE LEU GLN ALA ASN GLU SEQRES 8 C 164 VAL LEU GLU HIS LEU THR ARG ILE ALA LEU GLY GLN GLU SEQRES 9 C 164 LYS GLU GLN VAL LEU MET GLY ILE GLY LYS GLY ALA GLU SEQRES 10 C 164 THR LYS THR HIS VAL GLU VAL SER ALA LYS ASP ARG ILE SEQRES 11 C 164 LYS ALA LEU GLU LEU LEU GLY LYS ALA HIS ALA VAL PHE SEQRES 12 C 164 THR ASP LYS GLN LYS VAL GLU THR ASN GLN VAL ILE ILE SEQRES 13 C 164 VAL ASP ASP SER GLY ASP ALA GLU HELIX 1 1 SER A 7 ILE A 19 1 13 HELIX 2 2 ASN A 23 ALA A 28 1 6 HELIX 3 3 SER A 37 LEU A 46 1 10 HELIX 4 4 LYS A 48 ASP A 56 1 9 HELIX 5 5 GLN A 69 GLY A 83 1 15 HELIX 6 6 SER A 106 ALA A 120 1 15 HELIX 7 7 GLN B 69 ALA B 81 1 13 HELIX 8 8 SER B 106 ALA B 120 1 15 HELIX 9 9 SER C 7 ASN C 20 1 14 HELIX 10 10 ALA C 24 ALA C 30 1 7 HELIX 11 11 SER C 37 ALA C 43 1 7 HELIX 12 12 LYS C 48 ALA C 53 1 6 HELIX 13 13 ARG C 54 LYS C 60 1 7 HELIX 14 14 GLN C 69 ILE C 80 1 12 HELIX 15 15 SER C 106 ALA C 120 1 15 SHEET 1 BA 4 LYS A 86 GLY A 94 0 SHEET 2 BA 4 ALA A 97 GLU A 104 -1 O ALA A 97 N ILE A 93 SHEET 3 BA 4 LYS B 86 GLY B 94 0 SHEET 4 BA 4 ALA B 97 GLU B 104 -1 O ALA B 97 N ILE B 93 SHEET 1 CA 2 LYS C 86 GLY C 94 0 SHEET 2 CA 2 ALA C 97 GLU C 104 -1 O ALA C 97 N ILE C 93 SHEET 1 AB 3 THR A 125 ASP A 139 0 SHEET 2 AB 3 THR B 125 ASP B 139 1 O LYS B 127 N ASP A 126 SHEET 3 AB 3 THR C 125 ASP C 139 1 O LYS C 127 N ASP B 126 CRYST1 98.184 98.184 323.818 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010185 0.005880 0.000000 0.00000 SCALE2 0.000000 0.011761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003088 0.00000