HEADER TRANSFERASE 17-JUN-11 3ZRP TITLE CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF A THERMOPHILIC ARCHAEAL TITLE 2 SERINE : PYRUVATE AMINOTRANSFERASE FROM SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-PYRUVATE AMINOTRANSFERASE (AGXT); COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.51; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SAYER,M.BOMMER,M.N.ISUPOV,J.WARD,J.LITTLECHILD REVDAT 3 20-DEC-23 3ZRP 1 REMARK LINK REVDAT 2 11-JUL-12 3ZRP 1 JRNL REVDAT 1 27-JUN-12 3ZRP 0 JRNL AUTH C.SAYER,M.BOMMER,M.N.ISUPOV,J.WARD,J.LITTLECHILD JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 THERMOPHILIC SERINE:PYRUVATE AMINOTRANSFERASE FROM JRNL TITL 3 SULFOLOBUS SOLFATARICUS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 763 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22751661 JRNL DOI 10.1107/S0907444912011274 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0062 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 76065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.4600 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.4680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 596 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.07000 REMARK 3 B22 (A**2) : 3.50000 REMARK 3 B33 (A**2) : -2.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6548 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9017 ; 1.291 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 922 ; 5.075 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;35.054 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1228 ;16.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;17.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1040 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4960 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76065 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2BKW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML PROTEIN, 50 MM TRIS HCL PH 8.5 REMARK 280 AND 15% POLYETHYLENE GLYCOL (PEG) 400., PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.21500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.21500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 383 REMARK 465 ARG A 384 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 383 REMARK 465 ARG B 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2285 O HOH A 2330 4445 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 127.89 -37.32 REMARK 500 ALA A 170 -39.48 -139.53 REMARK 500 LYS A 189 -111.64 -102.59 REMARK 500 TYR A 219 -66.02 -97.08 REMARK 500 TYR A 297 108.04 -57.49 REMARK 500 VAL A 308 -56.02 -125.34 REMARK 500 PHE A 325 -167.37 -101.92 REMARK 500 PRO B 10 127.73 -37.11 REMARK 500 LYS B 52 1.97 -68.78 REMARK 500 ALA B 170 -41.98 -136.83 REMARK 500 LYS B 189 -110.65 -102.62 REMARK 500 TYR B 219 -63.75 -99.00 REMARK 500 TYR B 297 108.63 -57.95 REMARK 500 VAL B 308 -56.31 -124.67 REMARK 500 PHE B 325 -167.98 -102.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2055 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2080 DISTANCE = 6.31 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 1189 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZRR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF A THERMOPHILIC REMARK 900 ARCHAEAL SERINE : PYRUVATE AMINOTRANSFERASE FROM SULFOLOBUS REMARK 900 SOLFATARICUS REMARK 900 RELATED ID: 3ZRQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF A THERMOPHILIC REMARK 900 ARCHAEAL SERINE : PYRUVATE AMINOTRANSFERASE FROM SULFOLOBUS REMARK 900 SOLFATARICUS DBREF 3ZRP A 1 384 UNP Q97VM5 Q97VM5_SULSO 1 384 DBREF 3ZRP B 1 384 UNP Q97VM5 Q97VM5_SULSO 1 384 SEQRES 1 A 384 MET ASP LYS LEU LEU LEU HIS VAL GLY PRO THR THR ILE SEQRES 2 A 384 LYS GLU ASP VAL LEU VAL ALA GLY LEU GLU ASN ASN VAL SEQRES 3 A 384 GLY PHE THR SER LYS GLU PHE VAL GLU ALA LEU ALA TYR SEQRES 4 A 384 SER LEU LYS GLY LEU ARG TYR VAL MET GLY ALA SER LYS SEQRES 5 A 384 ASN TYR GLN PRO LEU ILE ILE PRO GLY GLY GLY THR SER SEQRES 6 A 384 ALA MET GLU SER VAL THR SER LEU LEU LYS PRO ASN ASP SEQRES 7 A 384 LYS ILE LEU VAL VAL SER ASN GLY VAL PHE GLY ASP ARG SEQRES 8 A 384 TRP GLU GLN ILE PHE LYS ARG TYR PRO VAL ASN VAL LYS SEQRES 9 A 384 VAL LEU ARG PRO SER PRO GLY ASP TYR VAL LYS PRO GLY SEQRES 10 A 384 GLU VAL GLU GLU GLU VAL ARG LYS SER GLU TYR LYS LEU SEQRES 11 A 384 VAL ALA LEU THR HIS VAL GLU THR SER THR GLY VAL ARG SEQRES 12 A 384 GLU PRO VAL LYS ASP VAL ILE ASN LYS ILE ARG LYS TYR SEQRES 13 A 384 VAL GLU LEU ILE VAL VAL ASP GLY VAL SER SER VAL GLY SEQRES 14 A 384 ALA GLU GLU VAL LYS ALA GLU GLU TRP ASN VAL ASP VAL SEQRES 15 A 384 TYR LEU THR ALA SER GLN LYS ALA LEU GLY SER ALA ALA SEQRES 16 A 384 GLY LEU GLY LEU LEU LEU LEU SER PRO LYS ALA LEU SER SEQRES 17 A 384 ILE LEU ASP SER GLN ASN SER ILE ALA GLY TYR TYR LEU SEQRES 18 A 384 ASP LEU ARG ASN TRP LEU PRO VAL MET ARG GLY ALA GLU SEQRES 19 A 384 GLU GLY LYS ALA ALA TYR PHE ALA THR PRO PRO VAL HIS SEQRES 20 A 384 VAL ILE LEU GLN LEU ALA GLU ALA PHE ARG LEU ILE GLU SEQRES 21 A 384 LYS GLU GLY ILE GLU ASN ARG ILE LYS ARG HIS THR MET SEQRES 22 A 384 VAL ALA SER ALA ILE ARG ALA GLY LEU GLU ALA LEU GLY SEQRES 23 A 384 LEU GLU ILE VAL ALA ARG ARG PRO GLU SER TYR SER ASN SEQRES 24 A 384 THR VAL THR GLY VAL ILE LEU LYS VAL ALA ASP PRO GLN SEQRES 25 A 384 LYS VAL LEU ALA GLY THR VAL ASN GLU GLY VAL GLU PHE SEQRES 26 A 384 ALA PRO GLY VAL HIS PRO ALA PHE LYS TYR PHE ARG ILE SEQRES 27 A 384 GLY HIS MET GLY TRP VAL THR PRO ASN ASP ALA ILE ILE SEQRES 28 A 384 ALA ILE SER VAL ILE GLU ARG THR LEU ARG LYS LEU GLY SEQRES 29 A 384 GLU PRO ILE ARG PHE GLY GLU GLY VAL LYS ALA VAL GLU SEQRES 30 A 384 GLU VAL LEU PHE SER ALA ARG SEQRES 1 B 384 MET ASP LYS LEU LEU LEU HIS VAL GLY PRO THR THR ILE SEQRES 2 B 384 LYS GLU ASP VAL LEU VAL ALA GLY LEU GLU ASN ASN VAL SEQRES 3 B 384 GLY PHE THR SER LYS GLU PHE VAL GLU ALA LEU ALA TYR SEQRES 4 B 384 SER LEU LYS GLY LEU ARG TYR VAL MET GLY ALA SER LYS SEQRES 5 B 384 ASN TYR GLN PRO LEU ILE ILE PRO GLY GLY GLY THR SER SEQRES 6 B 384 ALA MET GLU SER VAL THR SER LEU LEU LYS PRO ASN ASP SEQRES 7 B 384 LYS ILE LEU VAL VAL SER ASN GLY VAL PHE GLY ASP ARG SEQRES 8 B 384 TRP GLU GLN ILE PHE LYS ARG TYR PRO VAL ASN VAL LYS SEQRES 9 B 384 VAL LEU ARG PRO SER PRO GLY ASP TYR VAL LYS PRO GLY SEQRES 10 B 384 GLU VAL GLU GLU GLU VAL ARG LYS SER GLU TYR LYS LEU SEQRES 11 B 384 VAL ALA LEU THR HIS VAL GLU THR SER THR GLY VAL ARG SEQRES 12 B 384 GLU PRO VAL LYS ASP VAL ILE ASN LYS ILE ARG LYS TYR SEQRES 13 B 384 VAL GLU LEU ILE VAL VAL ASP GLY VAL SER SER VAL GLY SEQRES 14 B 384 ALA GLU GLU VAL LYS ALA GLU GLU TRP ASN VAL ASP VAL SEQRES 15 B 384 TYR LEU THR ALA SER GLN LYS ALA LEU GLY SER ALA ALA SEQRES 16 B 384 GLY LEU GLY LEU LEU LEU LEU SER PRO LYS ALA LEU SER SEQRES 17 B 384 ILE LEU ASP SER GLN ASN SER ILE ALA GLY TYR TYR LEU SEQRES 18 B 384 ASP LEU ARG ASN TRP LEU PRO VAL MET ARG GLY ALA GLU SEQRES 19 B 384 GLU GLY LYS ALA ALA TYR PHE ALA THR PRO PRO VAL HIS SEQRES 20 B 384 VAL ILE LEU GLN LEU ALA GLU ALA PHE ARG LEU ILE GLU SEQRES 21 B 384 LYS GLU GLY ILE GLU ASN ARG ILE LYS ARG HIS THR MET SEQRES 22 B 384 VAL ALA SER ALA ILE ARG ALA GLY LEU GLU ALA LEU GLY SEQRES 23 B 384 LEU GLU ILE VAL ALA ARG ARG PRO GLU SER TYR SER ASN SEQRES 24 B 384 THR VAL THR GLY VAL ILE LEU LYS VAL ALA ASP PRO GLN SEQRES 25 B 384 LYS VAL LEU ALA GLY THR VAL ASN GLU GLY VAL GLU PHE SEQRES 26 B 384 ALA PRO GLY VAL HIS PRO ALA PHE LYS TYR PHE ARG ILE SEQRES 27 B 384 GLY HIS MET GLY TRP VAL THR PRO ASN ASP ALA ILE ILE SEQRES 28 B 384 ALA ILE SER VAL ILE GLU ARG THR LEU ARG LYS LEU GLY SEQRES 29 B 384 GLU PRO ILE ARG PHE GLY GLU GLY VAL LYS ALA VAL GLU SEQRES 30 B 384 GLU VAL LEU PHE SER ALA ARG HET PLP A1189 15 HET PLP B1189 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 5 HOH *596(H2 O) HELIX 1 1 LYS A 14 GLY A 21 1 8 HELIX 2 2 SER A 30 GLY A 49 1 20 HELIX 3 3 GLY A 62 VAL A 70 1 9 HELIX 4 4 THR A 71 LEU A 74 5 4 HELIX 5 5 GLY A 86 LYS A 97 1 12 HELIX 6 6 LYS A 115 SER A 126 1 12 HELIX 7 7 PRO A 145 ARG A 154 1 10 HELIX 8 8 SER A 203 GLN A 213 1 11 HELIX 9 9 ASP A 222 GLU A 235 1 14 HELIX 10 10 PRO A 245 GLY A 263 1 19 HELIX 11 11 GLY A 263 LEU A 285 1 23 HELIX 12 12 ARG A 293 SER A 296 5 4 HELIX 13 13 ASP A 310 ASN A 320 1 11 HELIX 14 14 THR A 345 GLY A 364 1 20 HELIX 15 15 GLU A 371 SER A 382 1 12 HELIX 16 16 LYS B 14 ALA B 20 1 7 HELIX 17 17 GLY B 21 GLU B 23 5 3 HELIX 18 18 SER B 30 GLY B 49 1 20 HELIX 19 19 GLY B 62 VAL B 70 1 9 HELIX 20 20 THR B 71 LEU B 74 5 4 HELIX 21 21 GLY B 86 LYS B 97 1 12 HELIX 22 22 LYS B 115 SER B 126 1 12 HELIX 23 23 PRO B 145 ARG B 154 1 10 HELIX 24 24 SER B 203 GLN B 213 1 11 HELIX 25 25 ASP B 222 GLU B 235 1 14 HELIX 26 26 PRO B 245 GLY B 263 1 19 HELIX 27 27 GLY B 263 LEU B 285 1 23 HELIX 28 28 ARG B 293 SER B 296 5 4 HELIX 29 29 ASP B 310 ASN B 320 1 11 HELIX 30 30 THR B 345 GLY B 364 1 20 HELIX 31 31 GLU B 371 SER B 382 1 12 SHEET 1 AA 7 GLN A 55 PRO A 60 0 SHEET 2 AA 7 LEU A 197 LEU A 202 -1 O GLY A 198 N ILE A 59 SHEET 3 AA 7 VAL A 182 ALA A 186 -1 O TYR A 183 N LEU A 201 SHEET 4 AA 7 VAL A 157 ASP A 163 1 O VAL A 162 N LEU A 184 SHEET 5 AA 7 TYR A 128 THR A 134 1 O TYR A 128 N GLU A 158 SHEET 6 AA 7 LYS A 79 VAL A 83 1 O LYS A 79 N LYS A 129 SHEET 7 AA 7 ASN A 102 LEU A 106 1 O ASN A 102 N ILE A 80 SHEET 1 AB 3 VAL A 301 ILE A 305 0 SHEET 2 AB 3 TYR A 335 GLY A 339 -1 O PHE A 336 N VAL A 304 SHEET 3 AB 3 ALA A 326 PRO A 327 -1 O ALA A 326 N ARG A 337 SHEET 1 BA 7 GLN B 55 PRO B 60 0 SHEET 2 BA 7 LEU B 197 LEU B 202 -1 O GLY B 198 N ILE B 59 SHEET 3 BA 7 VAL B 182 ALA B 186 -1 O TYR B 183 N LEU B 201 SHEET 4 BA 7 VAL B 157 ASP B 163 1 O VAL B 162 N LEU B 184 SHEET 5 BA 7 TYR B 128 THR B 134 1 O TYR B 128 N GLU B 158 SHEET 6 BA 7 LYS B 79 VAL B 83 1 O LYS B 79 N LYS B 129 SHEET 7 BA 7 ASN B 102 LEU B 106 1 O ASN B 102 N ILE B 80 SHEET 1 BB 4 GLU B 288 ILE B 289 0 SHEET 2 BB 4 VAL B 301 ILE B 305 -1 N ILE B 305 O GLU B 288 SHEET 3 BB 4 TYR B 335 GLY B 339 -1 O PHE B 336 N VAL B 304 SHEET 4 BB 4 ALA B 326 PRO B 327 -1 O ALA B 326 N ARG B 337 LINK NZ LYS A 189 C4A PLP A1189 1555 1555 1.37 LINK NZ LYS B 189 C4A PLP B1189 1555 1555 1.37 SITE 1 AC1 14 GLY A 62 GLY A 63 THR A 64 PHE A 88 SITE 2 AC1 14 VAL A 136 THR A 138 ASP A 163 VAL A 165 SITE 3 AC1 14 SER A 166 GLN A 188 LYS A 189 HOH A2070 SITE 4 AC1 14 TYR B 240 THR B 243 SITE 1 AC2 14 TYR A 240 THR A 243 HOH A2239 GLY B 62 SITE 2 AC2 14 GLY B 63 THR B 64 PHE B 88 VAL B 136 SITE 3 AC2 14 THR B 138 ASP B 163 VAL B 165 SER B 166 SITE 4 AC2 14 GLN B 188 LYS B 189 CRYST1 162.430 54.970 101.810 90.00 111.27 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006156 0.000000 0.002397 0.00000 SCALE2 0.000000 0.018192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010540 0.00000