HEADER HYDROLASE/TRANSPORT PROTEIN 24-JUN-11 3ZS9 TITLE S. CEREVISIAE GET3-ADP-ALF4- COMPLEX WITH A CYTOSOLIC GET2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATPASE GET3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ARSENICAL PUMP-DRIVING ATPASE, ARSENITE-STIMULATED ATPASE, COMPND 5 GOLGI TO ER TRAFFIC PROTEIN 3, GUIDED ENTRY OF TAIL-ANCHORED PROTEINS COMPND 6 3, GET3; COMPND 7 EC: 3.6.3.16; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GOLGI TO ER TRAFFIC PROTEIN 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: CYTOSOLIC-FACING N-TERMINAL FRAGMENT, RESIDUES 1-38; COMPND 13 SYNONYM: HYDROXYUREA RESISTANCE PROTEIN 2, REQUIRED FOR MEIOTIC COMPND 14 NUCLEAR DIVISION PROTEIN 7, GET2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET19; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: PRIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYDROLASE-TRANSPORT PROTEIN COMPLEX, MEMBRANE PROTEIN, TARGETING KEYWDS 2 FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.MARIAPPAN,A.MATEJA,M.DOBOSZ,E.BOVE,R.S.HEGDE,R.J.KEENAN REVDAT 3 20-DEC-23 3ZS9 1 REMARK LINK REVDAT 2 09-NOV-11 3ZS9 1 JRNL REVDAT 1 07-SEP-11 3ZS9 0 JRNL AUTH M.MARIAPPAN,A.MATEJA,M.DOBOSZ,E.BOVE,R.S.HEGDE,R.J.KEENAN JRNL TITL THE MECHANISM OF MEMBRANE-ASSOCIATED STEPS IN TAIL-ANCHORED JRNL TITL 2 PROTEIN INSERTION. JRNL REF NATURE V. 477 61 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21866104 JRNL DOI 10.1038/NATURE10362 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 39345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5422 - 5.0458 1.00 2957 153 0.2216 0.2664 REMARK 3 2 5.0458 - 4.0066 1.00 2820 140 0.1640 0.2099 REMARK 3 3 4.0066 - 3.5006 1.00 2782 132 0.1585 0.2089 REMARK 3 4 3.5006 - 3.1807 1.00 2757 161 0.1675 0.2331 REMARK 3 5 3.1807 - 2.9529 1.00 2731 156 0.1802 0.2320 REMARK 3 6 2.9529 - 2.7788 0.99 2665 176 0.1858 0.2301 REMARK 3 7 2.7788 - 2.6397 0.99 2695 145 0.1756 0.2649 REMARK 3 8 2.6397 - 2.5248 0.97 2674 132 0.1825 0.2414 REMARK 3 9 2.5248 - 2.4277 0.96 2610 149 0.1792 0.2623 REMARK 3 10 2.4277 - 2.3439 0.96 2591 141 0.1848 0.2413 REMARK 3 11 2.3439 - 2.2706 0.96 2610 138 0.1857 0.2688 REMARK 3 12 2.2706 - 2.2057 0.95 2586 140 0.1877 0.2375 REMARK 3 13 2.2057 - 2.1477 0.93 2532 130 0.2026 0.2415 REMARK 3 14 2.1477 - 2.0953 0.86 2313 130 0.2281 0.2813 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 44.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.620 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06200 REMARK 3 B22 (A**2) : -3.10430 REMARK 3 B33 (A**2) : 4.16630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5385 REMARK 3 ANGLE : 1.024 7243 REMARK 3 CHIRALITY : 0.063 817 REMARK 3 PLANARITY : 0.004 914 REMARK 3 DIHEDRAL : 14.124 2062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -20.4452 9.3588 -19.0523 REMARK 3 T TENSOR REMARK 3 T11: 0.0676 T22: 0.0531 REMARK 3 T33: 0.0702 T12: -0.0033 REMARK 3 T13: -0.0470 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.9775 L22: 1.9788 REMARK 3 L33: 0.8844 L12: -0.1716 REMARK 3 L13: -0.1004 L23: 0.0143 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: 0.1519 S13: 0.1435 REMARK 3 S21: -0.0826 S22: 0.0310 S23: 0.0426 REMARK 3 S31: -0.0966 S32: -0.0687 S33: -0.0010 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -5.0369 -11.0223 -23.3535 REMARK 3 T TENSOR REMARK 3 T11: -0.0781 T22: -0.0348 REMARK 3 T33: -0.1075 T12: -0.0193 REMARK 3 T13: -0.0914 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.9290 L22: 0.8780 REMARK 3 L33: 0.4323 L12: 0.0311 REMARK 3 L13: 0.0325 L23: 0.2597 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.1450 S13: -0.0289 REMARK 3 S21: -0.0317 S22: 0.0380 S23: -0.0799 REMARK 3 S31: 0.0116 S32: 0.0406 S33: 0.0166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -17.1746 -27.9283 -17.7287 REMARK 3 T TENSOR REMARK 3 T11: 0.4017 T22: 0.2759 REMARK 3 T33: 0.4477 T12: -0.0274 REMARK 3 T13: 0.0226 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.0134 L22: 0.0751 REMARK 3 L33: 0.0978 L12: 0.0069 REMARK 3 L13: 0.0301 L23: 0.0066 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: 0.1250 S13: -0.2039 REMARK 3 S21: -0.0267 S22: -0.1166 S23: -0.0187 REMARK 3 S31: 0.0461 S32: -0.0360 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -5.1819 25.0478 -19.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.4078 T22: 0.1930 REMARK 3 T33: 0.4286 T12: -0.0417 REMARK 3 T13: -0.0453 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.0710 L22: 0.0610 REMARK 3 L33: 0.1713 L12: 0.0435 REMARK 3 L13: -0.0315 L23: 0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.1475 S13: 0.0747 REMARK 3 S21: 0.1766 S22: 0.0352 S23: 0.0008 REMARK 3 S31: -0.3161 S32: 0.2183 S33: -0.0073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED SIDECHAINS WERE MODELED REMARK 3 STEREOCHEMICALLY REMARK 4 REMARK 4 3ZS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WOJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.3 AMMONIUM ACETATE, REMARK 280 0.1 M BIS-TRIS, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.27900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.91550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.65850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.91550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.27900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.65850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 SER A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 465 ASN A 106 REMARK 465 ASN A 107 REMARK 465 ASN A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 ASP A 111 REMARK 465 GLY A 112 REMARK 465 GLN A 113 REMARK 465 GLY A 114 REMARK 465 ASP A 115 REMARK 465 ASP A 116 REMARK 465 LEU A 117 REMARK 465 GLY A 118 REMARK 465 SER A 119 REMARK 465 LEU A 120 REMARK 465 LEU A 121 REMARK 465 GLN A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 ALA A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 188 REMARK 465 LYS A 189 REMARK 465 PHE A 190 REMARK 465 GLY A 191 REMARK 465 GLU A 192 REMARK 465 ILE A 193 REMARK 465 THR A 194 REMARK 465 ASN A 195 REMARK 465 LYS A 196 REMARK 465 LEU A 197 REMARK 465 GLY A 198 REMARK 465 PRO A 199 REMARK 465 MET A 200 REMARK 465 LEU A 201 REMARK 465 ASN A 202 REMARK 465 SER A 203 REMARK 465 PHE A 204 REMARK 465 MET A 205 REMARK 465 GLY A 206 REMARK 465 ALA A 207 REMARK 465 GLY A 208 REMARK 465 ASN A 209 REMARK 465 VAL A 210 REMARK 465 ASP A 211 REMARK 465 ASP A 280 REMARK 465 GLN A 281 REMARK 465 GLU A 282 REMARK 465 HIS A 283 REMARK 465 ASN A 284 REMARK 465 LYS A 353 REMARK 465 GLU A 354 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 102 REMARK 465 SER B 103 REMARK 465 ARG B 104 REMARK 465 ALA B 105 REMARK 465 ASN B 106 REMARK 465 ASN B 107 REMARK 465 ASN B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 ASP B 111 REMARK 465 GLY B 112 REMARK 465 GLN B 113 REMARK 465 GLY B 114 REMARK 465 ASP B 115 REMARK 465 ASP B 116 REMARK 465 LEU B 117 REMARK 465 GLY B 118 REMARK 465 SER B 119 REMARK 465 LEU B 120 REMARK 465 LEU B 121 REMARK 465 GLN B 122 REMARK 465 GLY B 123 REMARK 465 GLY B 124 REMARK 465 ALA B 125 REMARK 465 GLN B 154 REMARK 465 GLY B 155 REMARK 465 GLU B 156 REMARK 465 GLY B 157 REMARK 465 GLU B 158 REMARK 465 PRO B 199 REMARK 465 MET B 200 REMARK 465 LEU B 201 REMARK 465 ASN B 202 REMARK 465 SER B 203 REMARK 465 PHE B 204 REMARK 465 MET B 205 REMARK 465 GLY B 206 REMARK 465 ALA B 207 REMARK 465 GLY B 208 REMARK 465 ASN B 209 REMARK 465 VAL B 210 REMARK 465 ASP B 211 REMARK 465 ASP B 280 REMARK 465 GLN B 281 REMARK 465 GLU B 282 REMARK 465 GLU B 351 REMARK 465 ASP B 352 REMARK 465 LYS B 353 REMARK 465 GLU B 354 REMARK 465 MET C 501 REMARK 465 SER C 502 REMARK 465 GLU C 503 REMARK 465 GLY C 535 REMARK 465 GLN C 536 REMARK 465 ALA C 537 REMARK 465 SER C 538 REMARK 465 MET D 501 REMARK 465 SER D 502 REMARK 465 GLU D 503 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 68 NH1 ARG B 75 2.09 REMARK 500 AL ALF A 402 O HOH A 2035 2.17 REMARK 500 N CYS A 285 O HOH A 2095 2.17 REMARK 500 O HOH B 2027 O HOH B 2048 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 158 75.06 -115.64 REMARK 500 THR A 170 -63.12 -29.37 REMARK 500 GLU A 351 -159.49 -95.03 REMARK 500 THR B 170 -63.82 -27.02 REMARK 500 ASN C 523 -122.88 48.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 32 OG1 REMARK 620 2 ADP A 401 O3B 96.4 REMARK 620 3 ALF A 402 F2 162.3 82.0 REMARK 620 4 HOH A1401 O 85.6 96.5 77.1 REMARK 620 5 HOH A1402 O 92.2 169.3 91.7 90.5 REMARK 620 6 HOH A1403 O 85.4 83.1 111.7 170.9 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1351 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 285 SG REMARK 620 2 CYS A 288 SG 111.4 REMARK 620 3 CYS B 285 SG 120.2 105.0 REMARK 620 4 CYS B 288 SG 109.2 99.3 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ALF A 402 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O2B REMARK 620 2 ALF A 402 F1 92.2 REMARK 620 3 ALF A 402 F2 87.9 177.4 REMARK 620 4 ALF A 402 F3 80.6 88.9 93.7 REMARK 620 5 ALF A 402 F4 95.5 89.5 87.9 175.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 32 OG1 REMARK 620 2 ADP B 401 O3B 93.2 REMARK 620 3 ALF B 402 F2 160.5 82.5 REMARK 620 4 HOH B1401 O 86.0 97.8 75.8 REMARK 620 5 HOH B1402 O 91.0 171.5 95.8 89.8 REMARK 620 6 HOH B1403 O 87.4 81.6 110.7 173.3 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ALF B 402 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 401 O2B REMARK 620 2 ALF B 402 F1 90.8 REMARK 620 3 ALF B 402 F2 90.4 175.6 REMARK 620 4 ALF B 402 F3 87.1 91.1 93.1 REMARK 620 5 ALF B 402 F4 92.6 88.1 87.7 179.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1351 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WOJ RELATED DB: PDB REMARK 900 ADP-ALF4 COMPLEX OF S. CEREVISIAE GET3 REMARK 900 RELATED ID: 3ZS8 RELATED DB: PDB REMARK 900 S. CEREVISIAE GET3 COMPLEXED WITH A CYTOSOLIC GET1 FRAGMENT DBREF 3ZS9 A 1 354 UNP Q12154 GET3_YEAST 1 354 DBREF 3ZS9 B 1 354 UNP Q12154 GET3_YEAST 1 354 DBREF 3ZS9 C 501 538 UNP P40056 GET2_YEAST 1 38 DBREF 3ZS9 D 501 538 UNP P40056 GET2_YEAST 1 38 SEQRES 1 A 354 MET ASP LEU THR VAL GLU PRO ASN LEU HIS SER LEU ILE SEQRES 2 A 354 THR SER THR THR HIS LYS TRP ILE PHE VAL GLY GLY LYS SEQRES 3 A 354 GLY GLY VAL GLY LYS THR THR SER SER CYS SER ILE ALA SEQRES 4 A 354 ILE GLN MET ALA LEU SER GLN PRO ASN LYS GLN PHE LEU SEQRES 5 A 354 LEU ILE SER THR ASP PRO ALA HIS ASN LEU SER ASP ALA SEQRES 6 A 354 PHE GLY GLU LYS PHE GLY LYS ASP ALA ARG LYS VAL THR SEQRES 7 A 354 GLY MET ASN ASN LEU SER CYS MET GLU ILE ASP PRO SER SEQRES 8 A 354 ALA ALA LEU LYS ASP MET ASN ASP MET ALA VAL SER ARG SEQRES 9 A 354 ALA ASN ASN ASN GLY SER ASP GLY GLN GLY ASP ASP LEU SEQRES 10 A 354 GLY SER LEU LEU GLN GLY GLY ALA LEU ALA ASP LEU THR SEQRES 11 A 354 GLY SER ILE PRO GLY ILE ASP GLU ALA LEU SER PHE MET SEQRES 12 A 354 GLU VAL MET LYS HIS ILE LYS ARG GLN GLU GLN GLY GLU SEQRES 13 A 354 GLY GLU THR PHE ASP THR VAL ILE PHE ASP THR ALA PRO SEQRES 14 A 354 THR GLY HIS THR LEU ARG PHE LEU GLN LEU PRO ASN THR SEQRES 15 A 354 LEU SER LYS LEU LEU GLU LYS PHE GLY GLU ILE THR ASN SEQRES 16 A 354 LYS LEU GLY PRO MET LEU ASN SER PHE MET GLY ALA GLY SEQRES 17 A 354 ASN VAL ASP ILE SER GLY LYS LEU ASN GLU LEU LYS ALA SEQRES 18 A 354 ASN VAL GLU THR ILE ARG GLN GLN PHE THR ASP PRO ASP SEQRES 19 A 354 LEU THR THR PHE VAL CYS VAL CYS ILE SER GLU PHE LEU SEQRES 20 A 354 SER LEU TYR GLU THR GLU ARG LEU ILE GLN GLU LEU ILE SEQRES 21 A 354 SER TYR ASP MET ASP VAL ASN SER ILE ILE VAL ASN GLN SEQRES 22 A 354 LEU LEU PHE ALA GLU ASN ASP GLN GLU HIS ASN CYS LYS SEQRES 23 A 354 ARG CYS GLN ALA ARG TRP LYS MET GLN LYS LYS TYR LEU SEQRES 24 A 354 ASP GLN ILE ASP GLU LEU TYR GLU ASP PHE HIS VAL VAL SEQRES 25 A 354 LYS MET PRO LEU CYS ALA GLY GLU ILE ARG GLY LEU ASN SEQRES 26 A 354 ASN LEU THR LYS PHE SER GLN PHE LEU ASN LYS GLU TYR SEQRES 27 A 354 ASN PRO ILE THR ASP GLY LYS VAL ILE TYR GLU LEU GLU SEQRES 28 A 354 ASP LYS GLU SEQRES 1 B 354 MET ASP LEU THR VAL GLU PRO ASN LEU HIS SER LEU ILE SEQRES 2 B 354 THR SER THR THR HIS LYS TRP ILE PHE VAL GLY GLY LYS SEQRES 3 B 354 GLY GLY VAL GLY LYS THR THR SER SER CYS SER ILE ALA SEQRES 4 B 354 ILE GLN MET ALA LEU SER GLN PRO ASN LYS GLN PHE LEU SEQRES 5 B 354 LEU ILE SER THR ASP PRO ALA HIS ASN LEU SER ASP ALA SEQRES 6 B 354 PHE GLY GLU LYS PHE GLY LYS ASP ALA ARG LYS VAL THR SEQRES 7 B 354 GLY MET ASN ASN LEU SER CYS MET GLU ILE ASP PRO SER SEQRES 8 B 354 ALA ALA LEU LYS ASP MET ASN ASP MET ALA VAL SER ARG SEQRES 9 B 354 ALA ASN ASN ASN GLY SER ASP GLY GLN GLY ASP ASP LEU SEQRES 10 B 354 GLY SER LEU LEU GLN GLY GLY ALA LEU ALA ASP LEU THR SEQRES 11 B 354 GLY SER ILE PRO GLY ILE ASP GLU ALA LEU SER PHE MET SEQRES 12 B 354 GLU VAL MET LYS HIS ILE LYS ARG GLN GLU GLN GLY GLU SEQRES 13 B 354 GLY GLU THR PHE ASP THR VAL ILE PHE ASP THR ALA PRO SEQRES 14 B 354 THR GLY HIS THR LEU ARG PHE LEU GLN LEU PRO ASN THR SEQRES 15 B 354 LEU SER LYS LEU LEU GLU LYS PHE GLY GLU ILE THR ASN SEQRES 16 B 354 LYS LEU GLY PRO MET LEU ASN SER PHE MET GLY ALA GLY SEQRES 17 B 354 ASN VAL ASP ILE SER GLY LYS LEU ASN GLU LEU LYS ALA SEQRES 18 B 354 ASN VAL GLU THR ILE ARG GLN GLN PHE THR ASP PRO ASP SEQRES 19 B 354 LEU THR THR PHE VAL CYS VAL CYS ILE SER GLU PHE LEU SEQRES 20 B 354 SER LEU TYR GLU THR GLU ARG LEU ILE GLN GLU LEU ILE SEQRES 21 B 354 SER TYR ASP MET ASP VAL ASN SER ILE ILE VAL ASN GLN SEQRES 22 B 354 LEU LEU PHE ALA GLU ASN ASP GLN GLU HIS ASN CYS LYS SEQRES 23 B 354 ARG CYS GLN ALA ARG TRP LYS MET GLN LYS LYS TYR LEU SEQRES 24 B 354 ASP GLN ILE ASP GLU LEU TYR GLU ASP PHE HIS VAL VAL SEQRES 25 B 354 LYS MET PRO LEU CYS ALA GLY GLU ILE ARG GLY LEU ASN SEQRES 26 B 354 ASN LEU THR LYS PHE SER GLN PHE LEU ASN LYS GLU TYR SEQRES 27 B 354 ASN PRO ILE THR ASP GLY LYS VAL ILE TYR GLU LEU GLU SEQRES 28 B 354 ASP LYS GLU SEQRES 1 C 38 MET SER GLU LEU THR GLU ALA GLU LYS ARG ARG LEU LEU SEQRES 2 C 38 ARG GLU ARG ARG GLN LYS LYS PHE SER ASN GLY GLY ALA SEQRES 3 C 38 SER SER ARG LEU ASN LYS ILE THR GLY GLN ALA SER SEQRES 1 D 38 MET SER GLU LEU THR GLU ALA GLU LYS ARG ARG LEU LEU SEQRES 2 D 38 ARG GLU ARG ARG GLN LYS LYS PHE SER ASN GLY GLY ALA SEQRES 3 D 38 SER SER ARG LEU ASN LYS ILE THR GLY GLN ALA SER HET ADP A 401 27 HET ALF A 402 5 HET MG A 403 1 HET ADP B 401 27 HET ALF B 402 5 HET MG B 403 1 HET ZN B1351 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 6 ALF 2(AL F4 1-) FORMUL 7 MG 2(MG 2+) FORMUL 11 ZN ZN 2+ FORMUL 12 HOH *237(H2 O) HELIX 1 1 LEU A 9 THR A 14 1 6 HELIX 2 2 GLY A 30 GLN A 46 1 17 HELIX 3 3 ASN A 61 GLY A 67 1 7 HELIX 4 4 ASP A 89 MET A 100 1 12 HELIX 5 5 LEU A 129 ILE A 133 5 5 HELIX 6 6 GLY A 135 GLN A 154 1 20 HELIX 7 7 PRO A 169 LEU A 187 1 19 HELIX 8 8 SER A 213 THR A 231 1 19 HELIX 9 9 GLU A 245 TYR A 262 1 18 HELIX 10 10 CYS A 285 TYR A 306 1 22 HELIX 11 11 GLY A 323 LYS A 336 1 14 HELIX 12 12 ASN A 339 GLY A 344 1 6 HELIX 13 13 LYS A 345 GLU A 349 5 5 HELIX 14 14 LEU B 9 THR B 14 1 6 HELIX 15 15 GLY B 30 GLN B 46 1 17 HELIX 16 16 ASN B 61 GLY B 67 1 7 HELIX 17 17 ASP B 89 MET B 100 1 12 HELIX 18 18 LEU B 129 ILE B 133 5 5 HELIX 19 19 GLY B 135 GLU B 153 1 19 HELIX 20 20 PRO B 169 LEU B 197 1 29 HELIX 21 21 ILE B 212 THR B 231 1 20 HELIX 22 22 GLU B 245 TYR B 262 1 18 HELIX 23 23 CYS B 285 TYR B 306 1 22 HELIX 24 24 GLY B 323 LYS B 336 1 14 HELIX 25 25 ASN B 339 GLY B 344 1 6 HELIX 26 26 LYS B 345 GLU B 349 5 5 HELIX 27 27 THR C 505 SER C 522 1 18 HELIX 28 28 GLY C 524 THR C 534 1 11 HELIX 29 29 THR D 505 PHE D 521 1 17 HELIX 30 30 GLY D 524 ALA D 537 1 14 SHEET 1 AA 8 ARG A 75 LYS A 76 0 SHEET 2 AA 8 LEU A 83 GLU A 87 -1 O CYS A 85 N ARG A 75 SHEET 3 AA 8 PHE A 51 SER A 55 1 O PHE A 51 N SER A 84 SHEET 4 AA 8 THR A 162 ASP A 166 1 O THR A 162 N LEU A 52 SHEET 5 AA 8 TRP A 20 GLY A 24 1 O ILE A 21 N PHE A 165 SHEET 6 AA 8 THR A 236 ILE A 243 1 O THR A 237 N PHE A 22 SHEET 7 AA 8 SER A 268 LEU A 274 1 O SER A 268 N CYS A 240 SHEET 8 AA 8 HIS A 310 PRO A 315 1 O HIS A 310 N ILE A 269 SHEET 1 BA 8 ARG B 75 LYS B 76 0 SHEET 2 BA 8 LEU B 83 GLU B 87 -1 O CYS B 85 N ARG B 75 SHEET 3 BA 8 PHE B 51 SER B 55 1 O PHE B 51 N SER B 84 SHEET 4 BA 8 THR B 162 ASP B 166 1 O THR B 162 N LEU B 52 SHEET 5 BA 8 TRP B 20 GLY B 25 1 O ILE B 21 N PHE B 165 SHEET 6 BA 8 THR B 236 ILE B 243 1 O THR B 237 N PHE B 22 SHEET 7 BA 8 SER B 268 LEU B 274 1 O SER B 268 N CYS B 240 SHEET 8 BA 8 HIS B 310 PRO B 315 1 O HIS B 310 N ILE B 269 LINK OG1 THR A 32 MG MG A 403 1555 1555 2.08 LINK SG CYS A 285 ZN ZN B1351 1555 1555 2.35 LINK SG CYS A 288 ZN ZN B1351 1555 1555 2.34 LINK O2B ADP A 401 AL ALF A 402 1555 1555 1.90 LINK O3B ADP A 401 MG MG A 403 1555 1555 2.07 LINK F2 ALF A 402 MG MG A 403 1555 1555 1.99 LINK MG MG A 403 O HOH A1401 1555 1555 2.12 LINK MG MG A 403 O HOH A1402 1555 1555 2.10 LINK MG MG A 403 O HOH A1403 1555 1555 2.11 LINK OG1 THR B 32 MG MG B 403 1555 1555 2.09 LINK SG CYS B 285 ZN ZN B1351 1555 1555 2.34 LINK SG CYS B 288 ZN ZN B1351 1555 1555 2.34 LINK O2B ADP B 401 AL ALF B 402 1555 1555 1.90 LINK O3B ADP B 401 MG MG B 403 1555 1555 2.06 LINK F2 ALF B 402 MG MG B 403 1555 1555 1.99 LINK MG MG B 403 O HOH B1401 1555 1555 2.10 LINK MG MG B 403 O HOH B1402 1555 1555 2.09 LINK MG MG B 403 O HOH B1403 1555 1555 2.11 SITE 1 AC1 23 GLY A 28 VAL A 29 GLY A 30 LYS A 31 SITE 2 AC1 23 THR A 32 THR A 33 ASN A 272 PRO A 315 SITE 3 AC1 23 LEU A 316 CYS A 317 GLY A 319 GLU A 320 SITE 4 AC1 23 ILE A 321 PHE A 330 ALF A 402 MG A 403 SITE 5 AC1 23 HOH A1403 HOH A2021 HOH A2112 HOH A2114 SITE 6 AC1 23 LYS B 26 GLU B 245 LEU B 247 SITE 1 AC2 15 GLY A 27 GLY A 28 LYS A 31 ASP A 57 SITE 2 AC2 15 ASN A 61 PRO A 169 ADP A 401 MG A 403 SITE 3 AC2 15 HOH A1401 HOH A1402 HOH A1403 HOH A2035 SITE 4 AC2 15 HOH A2036 LYS B 26 GLY B 27 SITE 1 AC3 6 THR A 32 ADP A 401 ALF A 402 HOH A1401 SITE 2 AC3 6 HOH A1402 HOH A1403 SITE 1 AC4 23 LYS A 26 GLU A 245 LEU A 247 HOH A2080 SITE 2 AC4 23 HOH A2083 GLY B 28 VAL B 29 GLY B 30 SITE 3 AC4 23 LYS B 31 THR B 32 THR B 33 ASN B 272 SITE 4 AC4 23 PRO B 315 LEU B 316 CYS B 317 GLY B 319 SITE 5 AC4 23 GLU B 320 ILE B 321 PHE B 330 ALF B 402 SITE 6 AC4 23 MG B 403 HOH B1403 HOH B2019 SITE 1 AC5 15 LYS A 26 GLY A 27 HOH A2085 GLY B 27 SITE 2 AC5 15 GLY B 28 LYS B 31 ASP B 57 ASN B 61 SITE 3 AC5 15 PRO B 169 ADP B 401 MG B 403 HOH B1401 SITE 4 AC5 15 HOH B1402 HOH B1403 HOH B2029 SITE 1 AC6 6 THR B 32 ADP B 401 ALF B 402 HOH B1401 SITE 2 AC6 6 HOH B1402 HOH B1403 SITE 1 AC7 4 CYS A 285 CYS A 288 CYS B 285 CYS B 288 CRYST1 52.558 77.317 165.831 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006030 0.00000