HEADER HYDROLASE 12-JUL-11 3ZTW TITLE THE 3-DIMENSIONAL STRUCTURE OF APO-MPGP, THE MANNOSYL-3- TITLE 2 PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS HB27 IN ITS TITLE 3 APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PKK223-3 KEYWDS HYDROLASE, HALOALKANOID ACID DEHALOGENASE-LIKE PHOSPHATASE, HAD-LIKE KEYWDS 2 PHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GONCALVES,N.BORGES,A.M.ESTEVES,H.SANTOS,P.M.MATIAS REVDAT 4 09-OCT-24 3ZTW 1 REMARK REVDAT 3 20-DEC-23 3ZTW 1 REMARK REVDAT 2 09-NOV-11 3ZTW 1 JRNL REVDAT 1 19-OCT-11 3ZTW 0 JRNL AUTH S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF JRNL TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB27: A NEW MEMBER OF THE HALOALKANOIC ACID JRNL TITL 4 DEHALOGENASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 50 9551 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21961705 JRNL DOI 10.1021/BI201171H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GONCALVES,A.M.ESTEVES,N.BORGES,H.SANTOS,P.M.MATIAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB27. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 390 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21393850 REMARK 1 DOI 10.1107/S1744309111002843 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 40720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5183 - 4.0883 0.99 4009 213 0.1526 0.2080 REMARK 3 2 4.0883 - 3.2455 1.00 3945 217 0.1577 0.1829 REMARK 3 3 3.2455 - 2.8354 1.00 3958 194 0.1697 0.2434 REMARK 3 4 2.8354 - 2.5762 1.00 3937 220 0.1722 0.2334 REMARK 3 5 2.5762 - 2.3916 1.00 3917 219 0.1699 0.2128 REMARK 3 6 2.3916 - 2.2506 1.00 3928 194 0.1655 0.2496 REMARK 3 7 2.2506 - 2.1379 1.00 3951 209 0.1729 0.2399 REMARK 3 8 2.1379 - 2.0448 1.00 3902 215 0.1920 0.2623 REMARK 3 9 2.0448 - 1.9661 0.98 3802 217 0.2045 0.2646 REMARK 3 10 1.9661 - 1.8982 0.84 3298 175 0.2416 0.3031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 53.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82300 REMARK 3 B22 (A**2) : -0.53780 REMARK 3 B33 (A**2) : -1.28520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.15580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3974 REMARK 3 ANGLE : 0.965 5405 REMARK 3 CHIRALITY : 0.060 586 REMARK 3 PLANARITY : 0.005 718 REMARK 3 DIHEDRAL : 12.384 1508 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:32) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8938 49.5074 -18.2462 REMARK 3 T TENSOR REMARK 3 T11: 0.5394 T22: 0.3197 REMARK 3 T33: 0.5416 T12: 0.0232 REMARK 3 T13: -0.0407 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.2498 L22: 0.0547 REMARK 3 L33: 2.9288 L12: 0.2068 REMARK 3 L13: -0.3934 L23: 0.2178 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.3979 S13: -1.1982 REMARK 3 S21: 0.4213 S22: 0.1246 S23: -0.2673 REMARK 3 S31: 1.5491 S32: 0.0796 S33: 0.0068 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 33:141) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8427 61.0708 -0.0224 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.1971 REMARK 3 T33: 0.2059 T12: 0.0185 REMARK 3 T13: -0.0292 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.3654 L22: 1.4308 REMARK 3 L33: 2.2113 L12: 0.6224 REMARK 3 L13: -0.9104 L23: -1.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0863 S13: 0.0306 REMARK 3 S21: 0.0554 S22: -0.0594 S23: -0.0941 REMARK 3 S31: 0.0091 S32: 0.1780 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 142:175) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9797 62.6112 2.1102 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.3924 REMARK 3 T33: 0.3027 T12: 0.0236 REMARK 3 T13: 0.0045 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 0.8911 L22: 0.1538 REMARK 3 L33: 1.1400 L12: -0.0257 REMARK 3 L13: 0.4766 L23: -0.1381 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.2423 S13: 0.0153 REMARK 3 S21: -0.0150 S22: 0.1636 S23: 0.3005 REMARK 3 S31: 0.0473 S32: -0.7341 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 176:252) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9371 58.3379 -22.2433 REMARK 3 T TENSOR REMARK 3 T11: 0.2491 T22: 0.2574 REMARK 3 T33: 0.2617 T12: -0.0233 REMARK 3 T13: -0.0121 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.2638 L22: 1.7290 REMARK 3 L33: 2.5516 L12: -0.2690 REMARK 3 L13: 1.3332 L23: 0.1309 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: 0.3458 S13: -0.4069 REMARK 3 S21: -0.3292 S22: 0.1677 S23: 0.1725 REMARK 3 S31: 0.3270 S32: 0.1009 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:34) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9326 57.0670 50.1608 REMARK 3 T TENSOR REMARK 3 T11: 0.7152 T22: 0.2884 REMARK 3 T33: 0.3222 T12: -0.0283 REMARK 3 T13: 0.0369 T23: -0.0850 REMARK 3 L TENSOR REMARK 3 L11: 0.5009 L22: 0.3381 REMARK 3 L33: 0.2004 L12: -0.4266 REMARK 3 L13: -0.1016 L23: 0.1339 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: -0.0502 S13: 0.6767 REMARK 3 S21: 0.4321 S22: -0.2493 S23: -0.0310 REMARK 3 S31: -0.8136 S32: -0.1776 S33: -0.0022 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 35:125) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3509 46.5233 31.0955 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1931 REMARK 3 T33: 0.1882 T12: -0.0087 REMARK 3 T13: -0.0346 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4869 L22: 2.0415 REMARK 3 L33: 2.6063 L12: 0.1749 REMARK 3 L13: -0.3883 L23: -0.2170 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0328 S13: -0.0597 REMARK 3 S21: 0.2544 S22: -0.1023 S23: -0.1923 REMARK 3 S31: -0.0224 S32: 0.2997 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 126:187) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0253 46.9141 26.8643 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.1949 REMARK 3 T33: 0.2285 T12: -0.0025 REMARK 3 T13: 0.0308 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.8078 L22: 2.0382 REMARK 3 L33: 2.8443 L12: 0.4653 REMARK 3 L13: -0.0724 L23: -0.1305 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: 0.1705 S13: 0.1282 REMARK 3 S21: 0.2058 S22: -0.0756 S23: 0.3447 REMARK 3 S31: -0.1333 S32: -0.2092 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 188:253) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3899 52.5964 49.3607 REMARK 3 T TENSOR REMARK 3 T11: 0.5073 T22: 0.2406 REMARK 3 T33: 0.3878 T12: -0.0785 REMARK 3 T13: 0.1811 T23: -0.1416 REMARK 3 L TENSOR REMARK 3 L11: 1.7560 L22: 2.0987 REMARK 3 L33: 1.1355 L12: -0.2018 REMARK 3 L13: -0.6146 L23: 0.6012 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: 0.0081 S13: -0.0564 REMARK 3 S21: 0.8731 S22: -0.3765 S23: 0.9947 REMARK 3 S31: 0.0186 S32: -0.3573 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95350 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZTY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REMARK 1 REFERENCE, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.34300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 ASP B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 LEU B 18 REMARK 465 ARG B 254 REMARK 465 GLY B 255 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 PRO B 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 223 CG OD1 OD2 REMARK 470 GLU A 226 CD OE1 OE2 REMARK 470 ARG A 253 CA C O CB CG CD NE REMARK 470 ARG A 253 CZ NH1 NH2 REMARK 470 GLU B 147 CD OE1 OE2 REMARK 470 ASP B 223 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -98.80 -79.44 REMARK 500 THR A 10 -86.42 -103.13 REMARK 500 ASP A 13 -158.99 -86.83 REMARK 500 GLU A 17 -152.77 -134.31 REMARK 500 PRO A 20 6.15 -64.59 REMARK 500 TYR A 137 -45.49 -139.62 REMARK 500 ASP B 6 75.32 -108.95 REMARK 500 LEU B 11 40.70 -94.00 REMARK 500 TYR B 137 -45.70 -136.85 REMARK 500 LEU B 247 -63.45 -91.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2004 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B2005 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B2013 DISTANCE = 6.78 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZTY RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF THE GADOLINIUM DERIVATIVE OF MPGP, REMARK 900 THE MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 900 THERMOPHILUS HB27 REMARK 900 RELATED ID: 3ZU6 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. DBREF 3ZTW A 1 259 UNP Q72K29 Q72K29_THET2 1 259 DBREF 3ZTW B 1 259 UNP Q72K29 Q72K29_THET2 1 259 SEQRES 1 A 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 A 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 A 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 A 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 A 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 A 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 A 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 A 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 A 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 A 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 A 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 A 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 A 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 A 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 A 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 A 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 A 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 A 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 A 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 A 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO SEQRES 1 B 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 B 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 B 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 B 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 B 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 B 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 B 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 B 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 B 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 B 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 B 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 B 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 B 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 B 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 B 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 B 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 B 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 B 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 B 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 B 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO HET PO4 A1254 5 HET PO4 B1254 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *439(H2 O) HELIX 1 1 ASP A 8 LEU A 12 1 5 HELIX 2 2 PRO A 20 LEU A 31 1 12 HELIX 3 3 THR A 42 LEU A 49 1 8 HELIX 4 4 GLU A 58 GLY A 60 5 3 HELIX 5 5 PRO A 88 GLY A 104 1 17 HELIX 6 6 TYR A 110 ASP A 112 5 3 HELIX 7 7 THR A 114 GLY A 123 1 10 HELIX 8 8 SER A 125 LYS A 133 1 9 HELIX 9 9 CYS A 144 GLU A 146 5 3 HELIX 10 10 GLU A 147 VAL A 158 1 12 HELIX 11 11 ASP A 176 LEU A 187 1 12 HELIX 12 12 ASP A 190 ARG A 195 1 6 HELIX 13 13 SER A 203 ASN A 205 5 3 HELIX 14 14 ASP A 206 VAL A 213 1 8 HELIX 15 15 PRO A 234 LEU A 247 1 14 HELIX 16 16 LEU A 248 LEU A 251 5 4 HELIX 17 17 GLY B 19 LEU B 31 1 13 HELIX 18 18 THR B 42 LEU B 49 1 8 HELIX 19 19 PRO B 88 GLY B 104 1 17 HELIX 20 20 TYR B 110 ASP B 112 5 3 HELIX 21 21 THR B 114 GLY B 123 1 10 HELIX 22 22 SER B 125 ALA B 134 1 10 HELIX 23 23 CYS B 144 GLU B 146 5 3 HELIX 24 24 GLU B 147 VAL B 158 1 12 HELIX 25 25 ASP B 176 ALA B 186 1 11 HELIX 26 26 ASP B 190 ARG B 195 1 6 HELIX 27 27 SER B 203 ASN B 205 5 3 HELIX 28 28 ASP B 206 ARG B 211 1 6 HELIX 29 29 GLY B 235 TYR B 246 1 12 HELIX 30 30 LEU B 247 ARG B 253 5 7 SHEET 1 AA 4 VAL A 35 VAL A 38 0 SHEET 2 AA 4 ILE A 2 ASP A 6 1 O VAL A 3 N VAL A 36 SHEET 3 AA 4 ALA A 197 GLY A 201 1 O VAL A 198 N PHE A 4 SHEET 4 AA 4 LEU A 215 TYR A 218 1 O LEU A 215 N GLY A 199 SHEET 1 AB 4 PHE A 55 VAL A 57 0 SHEET 2 AB 4 GLY A 62 PRO A 66 -1 O GLY A 62 N VAL A 57 SHEET 3 AB 4 TYR A 80 SER A 84 -1 O ARG A 81 N LEU A 65 SHEET 4 AB 4 ARG A 75 LYS A 77 -1 O ARG A 75 N VAL A 82 SHEET 1 AC 3 GLU A 139 THR A 140 0 SHEET 2 AC 3 TYR A 169 ALA A 172 -1 O ALA A 171 N GLU A 139 SHEET 3 AC 3 GLU A 161 HIS A 164 -1 O GLU A 161 N ALA A 172 SHEET 1 BA 5 VAL B 35 PRO B 37 0 SHEET 2 BA 5 ILE B 2 ASP B 6 1 O VAL B 3 N VAL B 36 SHEET 3 BA 5 ALA B 197 GLY B 201 1 O VAL B 198 N PHE B 4 SHEET 4 BA 5 LEU B 215 TYR B 218 1 O LEU B 215 N GLY B 199 SHEET 5 BA 5 LEU B 229 ALA B 230 1 O LEU B 229 N TYR B 218 SHEET 1 BB 4 PHE B 55 VAL B 57 0 SHEET 2 BB 4 GLY B 62 PRO B 66 -1 O GLY B 62 N VAL B 57 SHEET 3 BB 4 TYR B 80 SER B 84 -1 O ARG B 81 N LEU B 65 SHEET 4 BB 4 ARG B 75 LYS B 77 -1 O ARG B 75 N VAL B 82 SHEET 1 BC 3 GLU B 139 THR B 140 0 SHEET 2 BC 3 TYR B 169 ALA B 172 -1 O ALA B 171 N GLU B 139 SHEET 3 BC 3 GLU B 161 HIS B 164 -1 O GLU B 161 N ALA B 172 SSBOND 1 CYS A 144 CYS B 144 1555 1555 2.04 CISPEP 1 PRO A 53 PRO A 54 0 5.34 CISPEP 2 PRO B 53 PRO B 54 0 2.74 SITE 1 AC1 8 GLY A 165 GLY A 166 ARG A 167 PHE A 168 SITE 2 AC1 8 HIS A 170 HOH A2159 HOH A2186 HOH A2190 SITE 1 AC2 7 GLY B 165 GLY B 166 ARG B 167 PHE B 168 SITE 2 AC2 7 HIS B 170 HOH B2192 HOH B2210 CRYST1 39.520 70.686 95.422 90.00 92.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025304 0.000000 0.001304 0.00000 SCALE2 0.000000 0.014147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010494 0.00000