HEADER OXIDOREDUCTASE 13-JUL-11 3ZU2 TITLE STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH TITLE 2 THE COFACTOR NADH (SIRAS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REDUCTASE YPO4104/Y4119/YP_4011; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENOYL-ACP REDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS OXIDOREDUCTASE, FATTY ACID BIOSYNTHESIS II, SHORT-CHAIN KEYWDS 2 DEHYDROGENASE REDUCTASE SUPERFAMILY EXPDTA X-RAY DIFFRACTION AUTHOR M.W.HIRSCHBECK,J.KUPER,C.KISKER REVDAT 2 28-MAR-12 3ZU2 1 JRNL REVDAT 1 18-JAN-12 3ZU2 0 JRNL AUTH M.W.HIRSCHBECK,J.KUPER,H.LU,N.LIU,C.NECKLES,S.SHAH,S.WAGNER, JRNL AUTH 2 C.A.SOTRIFFER,P.J.TONGE,C.KISKER JRNL TITL STRUCTURE OF THE YERSINIA PESTIS FABV ENOYL-ACP REDUCTASE JRNL TITL 2 AND ITS INTERACTION WITH TWO 2-PYRIDONE INHIBITORS JRNL REF STRUCTURE V. 20 89 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22244758 JRNL DOI 10.1016/J.STR.2011.07.019 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.100 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.821 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.00 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.84 REMARK 3 NUMBER OF REFLECTIONS : 40073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2009 REMARK 3 R VALUE (WORKING SET) : 0.1994 REMARK 3 FREE R VALUE : 0.2279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8253 - 4.5214 0.98 4194 219 0.1605 0.1779 REMARK 3 2 4.5214 - 3.5899 1.00 4020 229 0.1548 0.1835 REMARK 3 3 3.5899 - 3.1365 0.99 3986 202 0.2034 0.2370 REMARK 3 4 3.1365 - 2.8498 0.99 3900 221 0.2343 0.2752 REMARK 3 5 2.8498 - 2.6456 0.97 3863 168 0.2628 0.2781 REMARK 3 6 2.6456 - 2.4897 0.96 3744 193 0.2612 0.3226 REMARK 3 7 2.4897 - 2.3651 0.94 3663 206 0.2709 0.3079 REMARK 3 8 2.3651 - 2.2621 0.93 3609 198 0.2873 0.3404 REMARK 3 9 2.2621 - 2.1751 0.91 3547 190 0.2965 0.3325 REMARK 3 10 2.1751 - 2.1000 0.91 3529 192 0.3071 0.3392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.351 REMARK 3 B_SOL : 60.595 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.31 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.2821 REMARK 3 B22 (A**2) : -0.2821 REMARK 3 B33 (A**2) : 0.5641 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3310 REMARK 3 ANGLE : 1.136 4497 REMARK 3 CHIRALITY : 0.073 497 REMARK 3 PLANARITY : 0.004 584 REMARK 3 DIHEDRAL : 16.326 1264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:13) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2836 92.9212 -35.0184 REMARK 3 T TENSOR REMARK 3 T11: 1.0940 T22: 1.3154 REMARK 3 T33: 1.0085 T12: 0.2418 REMARK 3 T13: -0.0203 T23: -0.3864 REMARK 3 L TENSOR REMARK 3 L11: 4.4442 L22: 3.2957 REMARK 3 L33: 4.8114 L12: 0.2742 REMARK 3 L13: -3.8616 L23: 1.9510 REMARK 3 S TENSOR REMARK 3 S11: 0.2058 S12: 1.7978 S13: 0.2545 REMARK 3 S21: 0.4139 S22: -2.0029 S23: -0.1595 REMARK 3 S31: -1.6121 S32: -2.8779 S33: 1.5169 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 14:37) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6824 77.5379 -15.4223 REMARK 3 T TENSOR REMARK 3 T11: 0.8197 T22: 0.1996 REMARK 3 T33: 0.3214 T12: 0.1132 REMARK 3 T13: 0.3465 T23: 0.1568 REMARK 3 L TENSOR REMARK 3 L11: 0.8865 L22: 0.5872 REMARK 3 L33: 2.6055 L12: 0.0701 REMARK 3 L13: -0.8068 L23: -0.9728 REMARK 3 S TENSOR REMARK 3 S11: -0.2645 S12: 0.0148 S13: -0.2274 REMARK 3 S21: -0.7404 S22: -0.4171 S23: -0.4084 REMARK 3 S31: 1.3678 S32: 0.2937 S33: 0.5680 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 38:62) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9094 74.6817 8.1886 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.4287 REMARK 3 T33: 0.2688 T12: -0.1080 REMARK 3 T13: 0.0468 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 2.2985 L22: 4.0127 REMARK 3 L33: 3.9346 L12: 0.0410 REMARK 3 L13: -0.8462 L23: -2.6517 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: -0.2034 S13: 0.0290 REMARK 3 S21: 0.2436 S22: -0.1136 S23: 0.0138 REMARK 3 S31: 0.0788 S32: -0.7753 S33: 0.1463 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 63:122) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0341 78.0207 8.4406 REMARK 3 T TENSOR REMARK 3 T11: 0.3344 T22: 0.3305 REMARK 3 T33: 0.4778 T12: -0.0456 REMARK 3 T13: 0.0475 T23: 0.1816 REMARK 3 L TENSOR REMARK 3 L11: 0.1590 L22: 4.3679 REMARK 3 L33: 2.8249 L12: 0.0017 REMARK 3 L13: 0.1187 L23: -1.4556 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: 0.0155 S13: -0.0107 REMARK 3 S21: 0.0019 S22: -0.5312 S23: -0.7894 REMARK 3 S31: 0.1859 S32: -0.1089 S33: 0.4604 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 123:176) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1047 76.9704 14.6129 REMARK 3 T TENSOR REMARK 3 T11: 0.3259 T22: 0.3736 REMARK 3 T33: 0.9731 T12: -0.0549 REMARK 3 T13: -0.0829 T23: 0.4045 REMARK 3 L TENSOR REMARK 3 L11: 0.2267 L22: 5.3128 REMARK 3 L33: 1.9018 L12: 0.7709 REMARK 3 L13: 0.0121 L23: -0.7007 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.0685 S13: 0.1372 REMARK 3 S21: 0.3560 S22: -0.6594 S23: -2.0515 REMARK 3 S31: -0.1236 S32: 0.4239 S33: 0.6679 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 177:205) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7004 48.0889 -2.6041 REMARK 3 T TENSOR REMARK 3 T11: 1.4137 T22: 0.3047 REMARK 3 T33: 0.9247 T12: 0.1673 REMARK 3 T13: 0.6623 T23: 0.1062 REMARK 3 L TENSOR REMARK 3 L11: 0.0882 L22: 6.0679 REMARK 3 L33: 0.2197 L12: 0.4889 REMARK 3 L13: 0.0531 L23: 0.5005 REMARK 3 S TENSOR REMARK 3 S11: -0.1606 S12: 0.8421 S13: -0.3313 REMARK 3 S21: -0.6754 S22: 0.0634 S23: -1.7186 REMARK 3 S31: 0.2427 S32: 0.8061 S33: 0.1889 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 206:245) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9292 66.4198 19.0129 REMARK 3 T TENSOR REMARK 3 T11: 0.5096 T22: 0.4273 REMARK 3 T33: 1.1605 T12: -0.0405 REMARK 3 T13: -0.1040 T23: 0.5080 REMARK 3 L TENSOR REMARK 3 L11: 0.5537 L22: 2.1741 REMARK 3 L33: 2.0242 L12: -0.0070 REMARK 3 L13: -0.3446 L23: -1.1846 REMARK 3 S TENSOR REMARK 3 S11: -0.1789 S12: -0.2036 S13: -0.2884 REMARK 3 S21: 0.5840 S22: -0.7255 S23: -1.6895 REMARK 3 S31: 0.4755 S32: 0.4736 S33: 0.8813 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 246:263) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8262 50.8006 11.9343 REMARK 3 T TENSOR REMARK 3 T11: 1.2375 T22: 0.2559 REMARK 3 T33: 0.8451 T12: -0.0745 REMARK 3 T13: 0.2781 T23: 0.2645 REMARK 3 L TENSOR REMARK 3 L11: 2.1460 L22: 0.8352 REMARK 3 L33: 4.8350 L12: -0.8106 REMARK 3 L13: 1.0969 L23: -1.9062 REMARK 3 S TENSOR REMARK 3 S11: 0.1160 S12: -0.1381 S13: -0.7711 REMARK 3 S21: -1.6143 S22: -0.3237 S23: -0.8939 REMARK 3 S31: 1.7755 S32: 0.2259 S33: 0.2884 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 264:285) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8124 62.5204 25.8525 REMARK 3 T TENSOR REMARK 3 T11: 0.6420 T22: 0.2931 REMARK 3 T33: 0.9709 T12: -0.1250 REMARK 3 T13: -0.2419 T23: 0.4434 REMARK 3 L TENSOR REMARK 3 L11: 2.7652 L22: 0.9374 REMARK 3 L33: 5.5824 L12: -0.2123 REMARK 3 L13: -1.0996 L23: -2.0986 REMARK 3 S TENSOR REMARK 3 S11: 0.2064 S12: -0.2468 S13: -0.8762 REMARK 3 S21: 0.6485 S22: -0.9479 S23: -1.2339 REMARK 3 S31: 1.0467 S32: 0.3446 S33: 0.6494 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 286:320) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9575 56.8583 8.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.8868 T22: 0.3213 REMARK 3 T33: 0.4661 T12: -0.1559 REMARK 3 T13: 0.2014 T23: 0.1636 REMARK 3 L TENSOR REMARK 3 L11: 0.0722 L22: 2.3374 REMARK 3 L33: 2.0839 L12: -0.0526 REMARK 3 L13: 0.2208 L23: -2.1458 REMARK 3 S TENSOR REMARK 3 S11: -0.1958 S12: 0.0079 S13: 0.0281 REMARK 3 S21: -0.4624 S22: -0.3882 S23: -0.6228 REMARK 3 S31: 0.8842 S32: 0.1306 S33: 0.5404 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 321:345) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9174 63.1913 17.4506 REMARK 3 T TENSOR REMARK 3 T11: 0.6791 T22: 0.4842 REMARK 3 T33: 0.3735 T12: -0.2127 REMARK 3 T13: 0.1208 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 0.7360 L22: 2.2595 REMARK 3 L33: 0.1154 L12: 0.6371 REMARK 3 L13: 0.1047 L23: -0.4306 REMARK 3 S TENSOR REMARK 3 S11: -0.1567 S12: -0.0959 S13: -0.1218 REMARK 3 S21: 0.2033 S22: -0.0787 S23: 0.3208 REMARK 3 S31: 0.3075 S32: -0.7396 S33: 0.0887 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 346:357) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1157 55.5892 23.6533 REMARK 3 T TENSOR REMARK 3 T11: 0.8573 T22: 0.4800 REMARK 3 T33: 0.5284 T12: -0.2264 REMARK 3 T13: 0.0421 T23: 0.2430 REMARK 3 L TENSOR REMARK 3 L11: 4.5843 L22: 0.7518 REMARK 3 L33: 3.1575 L12: 1.5834 REMARK 3 L13: 0.4709 L23: 0.8907 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: 0.0196 S13: -0.8805 REMARK 3 S21: 0.5535 S22: -0.5529 S23: -0.4931 REMARK 3 S31: 0.8587 S32: 0.0999 S33: 0.5154 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 358:375) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2024 44.7360 7.1285 REMARK 3 T TENSOR REMARK 3 T11: 1.6296 T22: 0.2581 REMARK 3 T33: 0.4933 T12: -0.4007 REMARK 3 T13: 0.3267 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 5.2234 L22: 8.9111 REMARK 3 L33: 8.8132 L12: 6.3001 REMARK 3 L13: -5.6764 L23: -8.6021 REMARK 3 S TENSOR REMARK 3 S11: -1.1318 S12: -0.2341 S13: -1.5355 REMARK 3 S21: -2.5876 S22: 0.3629 S23: -0.5844 REMARK 3 S31: 1.8180 S32: -0.4180 S33: 0.9719 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 376:399) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7231 56.3727 -5.5581 REMARK 3 T TENSOR REMARK 3 T11: 1.4754 T22: 0.3994 REMARK 3 T33: 0.3993 T12: -0.2030 REMARK 3 T13: 0.2102 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 4.2146 L22: 9.5564 REMARK 3 L33: 3.0652 L12: 6.4093 REMARK 3 L13: 0.9956 L23: 0.9781 REMARK 3 S TENSOR REMARK 3 S11: 0.2917 S12: -0.0682 S13: -0.5183 REMARK 3 S21: -0.4313 S22: -0.2397 S23: -0.8110 REMARK 3 S31: 1.8299 S32: -0.7462 S33: 0.0182 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 400:422) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1088 81.3129 -4.0098 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.2927 REMARK 3 T33: 0.4208 T12: 0.0281 REMARK 3 T13: 0.1646 T23: 0.1127 REMARK 3 L TENSOR REMARK 3 L11: 1.1223 L22: 3.9386 REMARK 3 L33: 5.7743 L12: 0.8757 REMARK 3 L13: 1.2330 L23: -1.2472 REMARK 3 S TENSOR REMARK 3 S11: -0.4706 S12: 0.1077 S13: 0.4089 REMARK 3 S21: -0.6840 S22: -0.3612 S23: -0.3444 REMARK 3 S31: -0.3629 S32: -0.2181 S33: 0.5921 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZU2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-11. REMARK 100 THE PDBE ID CODE IS EBI-48762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; ESRF REMARK 200 BEAMLINE : 14.1; ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918; 1.25 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48035 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 39.40 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.5 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.2 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.3 REMARK 200 R MERGE FOR SHELL (I) : 0.62 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTO-SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.25M SODIUM MALONATE, 100MM REMARK 280 IMIDAZOLE PH 8.25. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.09333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.04667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.57000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.52333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 182.61667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 146.09333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 73.04667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.52333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.57000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 182.61667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -52.08000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 90.20521 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.52333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2092 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 200 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 375 N ASN A 377 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 161 49.29 -148.37 REMARK 500 LEU A 180 76.34 -102.45 REMARK 500 PRO A 182 -173.42 -64.80 REMARK 500 PRO A 206 -173.41 -66.28 REMARK 500 TYR A 258 -81.47 -101.47 REMARK 500 MET A 307 -26.89 88.65 REMARK 500 TRP A 372 -75.08 -53.72 REMARK 500 THR A 376 71.82 -32.04 REMARK 500 ASP A 378 11.24 51.17 REMARK 500 ASP A 385 49.72 -99.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE (NAI): NADH REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1424 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 74 O REMARK 620 2 SER A 161 OG 140.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A1423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZU3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM REMARK 900 YERSINIA PESTIS WITH THE COFACTOR NADH (MR, CLEAVED REMARK 900 HISTAG) REMARK 900 RELATED ID: 3ZU4 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM REMARK 900 YERSINIA PESTIS WITH THE COFACTOR NADH AND THE 2- REMARK 900 PYRIDONE INHIBITOR PT172 REMARK 900 RELATED ID: 3ZU5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM REMARK 900 YERSINIA PESTIS WITH THE COFACTOR NADH AND THE 2- REMARK 900 PYRIDONE INHIBITOR PT173 DBREF 3ZU2 A 24 422 UNP Q8Z9U1 Y4104_YERPE 1 399 SEQADV 3ZU2 MET A 1 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 GLY A 2 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 SER A 3 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 SER A 4 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 HIS A 5 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 HIS A 6 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 HIS A 7 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 HIS A 8 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 HIS A 9 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 HIS A 10 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 SER A 11 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 SER A 12 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 GLY A 13 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 LEU A 14 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 VAL A 15 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 PRO A 16 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 ARG A 17 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 GLY A 18 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 SER A 19 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 HIS A 20 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 MET A 21 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 LEU A 22 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 GLU A 23 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU2 SER A 299 UNP Q8Z9U1 THR 276 VARIANT SEQRES 1 A 422 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 422 LEU VAL PRO ARG GLY SER HIS MET LEU GLU MET ILE ILE SEQRES 3 A 422 LYS PRO ARG VAL ARG GLY PHE ILE CYS VAL THR ALA HIS SEQRES 4 A 422 PRO THR GLY CYS GLU ALA ASN VAL LYS LYS GLN ILE ASP SEQRES 5 A 422 TYR VAL THR THR GLU GLY PRO ILE ALA ASN GLY PRO LYS SEQRES 6 A 422 ARG VAL LEU VAL ILE GLY ALA SER THR GLY TYR GLY LEU SEQRES 7 A 422 ALA ALA ARG ILE THR ALA ALA PHE GLY CYS GLY ALA ASP SEQRES 8 A 422 THR LEU GLY VAL PHE PHE GLU ARG PRO GLY GLU GLU GLY SEQRES 9 A 422 LYS PRO GLY THR SER GLY TRP TYR ASN SER ALA ALA PHE SEQRES 10 A 422 HIS LYS PHE ALA ALA GLN LYS GLY LEU TYR ALA LYS SER SEQRES 11 A 422 ILE ASN GLY ASP ALA PHE SER ASP GLU ILE LYS GLN LEU SEQRES 12 A 422 THR ILE ASP ALA ILE LYS GLN ASP LEU GLY GLN VAL ASP SEQRES 13 A 422 GLN VAL ILE TYR SER LEU ALA SER PRO ARG ARG THR HIS SEQRES 14 A 422 PRO LYS THR GLY GLU VAL PHE ASN SER ALA LEU LYS PRO SEQRES 15 A 422 ILE GLY ASN ALA VAL ASN LEU ARG GLY LEU ASP THR ASP SEQRES 16 A 422 LYS GLU VAL ILE LYS GLU SER VAL LEU GLN PRO ALA THR SEQRES 17 A 422 GLN SER GLU ILE ASP SER THR VAL ALA VAL MET GLY GLY SEQRES 18 A 422 GLU ASP TRP GLN MET TRP ILE ASP ALA LEU LEU ASP ALA SEQRES 19 A 422 GLY VAL LEU ALA GLU GLY ALA GLN THR THR ALA PHE THR SEQRES 20 A 422 TYR LEU GLY GLU LYS ILE THR HIS ASP ILE TYR TRP ASN SEQRES 21 A 422 GLY SER ILE GLY ALA ALA LYS LYS ASP LEU ASP GLN LYS SEQRES 22 A 422 VAL LEU ALA ILE ARG GLU SER LEU ALA ALA HIS GLY GLY SEQRES 23 A 422 GLY ASP ALA ARG VAL SER VAL LEU LYS ALA VAL VAL SER SEQRES 24 A 422 GLN ALA SER SER ALA ILE PRO MET MET PRO LEU TYR LEU SEQRES 25 A 422 SER LEU LEU PHE LYS VAL MET LYS GLU LYS GLY THR HIS SEQRES 26 A 422 GLU GLY CYS ILE GLU GLN VAL TYR SER LEU TYR LYS ASP SEQRES 27 A 422 SER LEU CYS GLY ASP SER PRO HIS MET ASP GLN GLU GLY SEQRES 28 A 422 ARG LEU ARG ALA ASP TYR LYS GLU LEU ASP PRO GLU VAL SEQRES 29 A 422 GLN ASN GLN VAL GLN GLN LEU TRP ASP GLN VAL THR ASN SEQRES 30 A 422 ASP ASN ILE TYR GLN LEU THR ASP PHE VAL GLY TYR LYS SEQRES 31 A 422 SER GLU PHE LEU ASN LEU PHE GLY PHE GLY ILE ASP GLY SEQRES 32 A 422 VAL ASP TYR ASP ALA ASP VAL ASN PRO ASP VAL LYS ILE SEQRES 33 A 422 PRO ASN LEU ILE GLN GLY HET NAI A1423 44 HET NA A1424 1 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION HETSYN NAI NADH FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 NA NA 1+ FORMUL 4 HOH *160(H2 O) HELIX 1 1 GLY A 18 LEU A 22 5 5 HELIX 2 2 HIS A 39 GLY A 58 1 20 HELIX 3 3 THR A 74 GLY A 89 1 16 HELIX 4 4 THR A 108 LYS A 124 1 17 HELIX 5 5 SER A 137 LEU A 152 1 16 HELIX 6 6 THR A 208 GLY A 220 1 13 HELIX 7 7 GLY A 221 ALA A 234 1 14 HELIX 8 8 GLU A 251 ASP A 256 1 6 HELIX 9 9 GLY A 261 HIS A 284 1 24 HELIX 10 10 ALA A 301 ILE A 305 5 5 HELIX 11 11 MET A 307 GLY A 323 1 17 HELIX 12 12 GLY A 327 SER A 339 1 13 HELIX 13 13 ASP A 356 ASP A 361 1 6 HELIX 14 14 ASP A 361 GLN A 374 1 14 HELIX 15 15 ASN A 379 THR A 384 1 6 HELIX 16 16 ASP A 385 PHE A 397 1 13 SHEET 1 AA 2 VAL A 30 ARG A 31 0 SHEET 2 AA 2 ILE A 34 CYS A 35 -1 O ILE A 34 N ARG A 31 SHEET 1 AB 8 LEU A 353 ARG A 354 0 SHEET 2 AB 8 ASP A 288 VAL A 293 1 O VAL A 291 N LEU A 353 SHEET 3 AB 8 LEU A 237 THR A 247 1 O ALA A 241 N ASP A 288 SHEET 4 AB 8 VAL A 155 TYR A 160 1 O VAL A 155 N ALA A 238 SHEET 5 AB 8 ARG A 66 ILE A 70 1 O ARG A 66 N ASP A 156 SHEET 6 AB 8 ASP A 91 PHE A 96 1 O ASP A 91 N VAL A 67 SHEET 7 AB 8 ALA A 128 ASN A 132 1 O LYS A 129 N GLY A 94 SHEET 8 AB 8 LEU A 419 GLN A 421 1 O ILE A 420 N ASN A 132 SHEET 1 AC 2 ARG A 166 THR A 168 0 SHEET 2 AC 2 VAL A 175 ASN A 177 -1 O PHE A 176 N ARG A 167 SHEET 1 AD 2 VAL A 187 LEU A 189 0 SHEET 2 AD 2 SER A 202 LEU A 204 -1 O SER A 202 N LEU A 189 SHEET 1 AE 2 LEU A 192 ASP A 193 0 SHEET 2 AE 2 VAL A 198 ILE A 199 -1 O VAL A 198 N ASP A 193 LINK NA NA A1424 O THR A 74 1555 1555 2.93 LINK NA NA A1424 OG SER A 161 1555 1555 3.05 SITE 1 AC1 33 HIS A 10 GLY A 71 ALA A 72 SER A 73 SITE 2 AC1 33 THR A 74 GLY A 75 TYR A 76 PHE A 96 SITE 3 AC1 33 PHE A 97 GLU A 98 GLY A 133 ASP A 134 SITE 4 AC1 33 ALA A 135 SER A 161 LEU A 162 ALA A 163 SITE 5 AC1 33 SER A 164 PHE A 246 THR A 247 TYR A 248 SITE 6 AC1 33 LYS A 267 LEU A 294 LYS A 295 ALA A 296 SITE 7 AC1 33 VAL A 297 SER A 299 ALA A 301 SER A 302 SITE 8 AC1 33 NA A1424 HOH A2057 HOH A2096 HOH A2097 SITE 9 AC1 33 HOH A2121 SITE 1 AC2 6 GLY A 71 THR A 74 TYR A 76 GLY A 77 SITE 2 AC2 6 SER A 161 NAI A1423 CRYST1 104.160 104.160 219.140 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009601 0.005543 0.000000 0.00000 SCALE2 0.000000 0.011086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004563 0.00000