HEADER OXIDOREDUCTASE 13-JUL-11 3ZU3 TITLE STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH TITLE 2 THE COFACTOR NADH (MR, CLEAVED HISTAG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REDUCTASE YPO4104/Y4119/YP_4011; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENOYL-ACP REDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS OXIDOREDUCTASE, FATTY ACID BIOSYNTHESIS II, SHORT-CHAIN DEHYDROGENASE KEYWDS 2 REDUCTASE SUPERFAMILY EXPDTA X-RAY DIFFRACTION AUTHOR M.W.HIRSCHBECK,J.KUPER,C.KISKER REVDAT 3 20-DEC-23 3ZU3 1 REMARK LINK REVDAT 2 28-MAR-12 3ZU3 1 JRNL HETSYN REVDAT 1 18-JAN-12 3ZU3 0 JRNL AUTH M.W.HIRSCHBECK,J.KUPER,H.LU,N.LIU,C.NECKLES,S.SHAH,S.WAGNER, JRNL AUTH 2 C.A.SOTRIFFER,P.J.TONGE,C.KISKER JRNL TITL STRUCTURE OF THE YERSINIA PESTIS FABV ENOYL-ACP REDUCTASE JRNL TITL 2 AND ITS INTERACTION WITH TWO 2-PYRIDONE INHIBITORS JRNL REF STRUCTURE V. 20 89 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22244758 JRNL DOI 10.1016/J.STR.2011.07.019 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 46573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6213 - 3.8804 1.00 4717 226 0.1534 0.1864 REMARK 3 2 3.8804 - 3.0807 1.00 4563 244 0.1418 0.1775 REMARK 3 3 3.0807 - 2.6915 1.00 4511 235 0.1607 0.2189 REMARK 3 4 2.6915 - 2.4455 1.00 4491 257 0.1631 0.1983 REMARK 3 5 2.4455 - 2.2703 0.99 4432 235 0.1672 0.2292 REMARK 3 6 2.2703 - 2.1365 0.99 4401 245 0.1757 0.2161 REMARK 3 7 2.1365 - 2.0295 0.98 4399 244 0.1874 0.2666 REMARK 3 8 2.0295 - 1.9411 0.97 4333 213 0.2070 0.2415 REMARK 3 9 1.9411 - 1.8664 0.95 4251 212 0.2231 0.2688 REMARK 3 10 1.8664 - 1.8020 0.93 4143 221 0.2444 0.3003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 54.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91860 REMARK 3 B22 (A**2) : 1.91860 REMARK 3 B33 (A**2) : -3.83730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3424 REMARK 3 ANGLE : 1.074 4657 REMARK 3 CHIRALITY : 0.067 520 REMARK 3 PLANARITY : 0.005 603 REMARK 3 DIHEDRAL : 14.278 1308 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -5:11) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1044 -44.7776 16.0342 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.3098 REMARK 3 T33: 0.0938 T12: -0.1327 REMARK 3 T13: -0.0077 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.1126 L22: 0.2559 REMARK 3 L33: 0.0448 L12: 0.0499 REMARK 3 L13: -0.2195 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.4133 S12: -0.5409 S13: 0.0589 REMARK 3 S21: 0.0701 S22: -0.1994 S23: 0.0731 REMARK 3 S31: -0.0500 S32: -0.3038 S33: -0.2529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 12:168) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9111 -34.5668 -2.8121 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0882 REMARK 3 T33: 0.0354 T12: -0.0624 REMARK 3 T13: -0.0213 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 2.2314 L22: 0.6976 REMARK 3 L33: 1.2882 L12: 0.7906 REMARK 3 L13: 1.0407 L23: 0.2951 REMARK 3 S TENSOR REMARK 3 S11: -0.1712 S12: 0.0877 S13: 0.2341 REMARK 3 S21: -0.0079 S22: 0.0128 S23: 0.0809 REMARK 3 S31: -0.1732 S32: 0.1909 S33: 0.1291 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 169:240) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6723 -32.3722 -13.2411 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.0857 REMARK 3 T33: 0.1728 T12: -0.0810 REMARK 3 T13: -0.1087 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 1.9796 L22: 0.2088 REMARK 3 L33: 1.4853 L12: 0.2808 REMARK 3 L13: 1.5385 L23: 0.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.5126 S12: 0.4825 S13: 0.4864 REMARK 3 S21: -0.0713 S22: 0.1361 S23: 0.1494 REMARK 3 S31: -0.3227 S32: 0.1715 S33: 0.2741 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 270:301) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8254 -49.3048 -11.2559 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.1186 REMARK 3 T33: 0.0745 T12: -0.0182 REMARK 3 T13: 0.0052 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.3460 L22: 0.3201 REMARK 3 L33: 0.7203 L12: 0.1061 REMARK 3 L13: 0.0717 L23: 0.3356 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: 0.0088 S13: 0.0594 REMARK 3 S21: 0.0866 S22: 0.0157 S23: 0.0077 REMARK 3 S31: 0.0390 S32: 0.0945 S33: 0.0358 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 302:322) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2354 -44.9264 -16.5364 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.3808 REMARK 3 T33: 0.0679 T12: -0.0457 REMARK 3 T13: 0.0024 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 2.3769 L22: 1.1393 REMARK 3 L33: 0.5828 L12: 0.0407 REMARK 3 L13: 1.1515 L23: 0.1049 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.8158 S13: -0.1224 REMARK 3 S21: -0.1881 S22: 0.0202 S23: -0.0543 REMARK 3 S31: -0.0378 S32: 0.5582 S33: -0.0289 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 323:327) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6541 -38.0327 -28.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.3865 T22: 0.7378 REMARK 3 T33: 0.1364 T12: -0.4791 REMARK 3 T13: -0.1304 T23: 0.1733 REMARK 3 L TENSOR REMARK 3 L11: 0.9913 L22: 0.8987 REMARK 3 L33: 3.1834 L12: 0.2325 REMARK 3 L13: -1.0477 L23: 0.2793 REMARK 3 S TENSOR REMARK 3 S11: -0.5584 S12: 0.5372 S13: 0.2440 REMARK 3 S21: -0.3638 S22: 0.4211 S23: 0.2339 REMARK 3 S31: -0.0062 S32: 0.4169 S33: 0.0748 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 328:357) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2136 -52.2234 -18.3962 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.1503 REMARK 3 T33: 0.0913 T12: -0.0301 REMARK 3 T13: 0.0104 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.8987 L22: 1.0550 REMARK 3 L33: 0.9352 L12: 0.2132 REMARK 3 L13: 0.8636 L23: 0.3399 REMARK 3 S TENSOR REMARK 3 S11: -0.1371 S12: 0.3950 S13: -0.0596 REMARK 3 S21: -0.1303 S22: 0.1098 S23: 0.1155 REMARK 3 S31: 0.2004 S32: 0.1949 S33: 0.0089 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 358:399) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4557 -47.8682 5.3006 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: 0.1145 REMARK 3 T33: 0.0493 T12: -0.0374 REMARK 3 T13: -0.0100 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.4993 L22: 0.6959 REMARK 3 L33: 0.4504 L12: 0.3529 REMARK 3 L13: -0.2270 L23: 0.1376 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.1046 S13: -0.0512 REMARK 3 S21: 0.1267 S22: -0.0652 S23: -0.0369 REMARK 3 S31: 0.1188 S32: 0.1977 S33: 0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 33.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZU2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000, 150 MM AMMONIUM SULFATE REMARK 280 100 MM, MES PH 5.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.25367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.50733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.50733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.25367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2287 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2411 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 177 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 248 O HOH A 2277 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 235 -87.49 -103.62 REMARK 500 HIS A 261 70.67 -102.13 REMARK 500 MET A 284 -18.27 84.21 REMARK 500 PRO A 322 -17.64 -41.03 REMARK 500 HIS A 323 49.63 39.70 REMARK 500 ASP A 362 47.46 -105.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 51 O REMARK 620 2 SER A 138 O 150.6 REMARK 620 3 SER A 138 OG 137.0 52.3 REMARK 620 4 NAI A1400 O5B 81.9 95.4 141.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZU4 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH REMARK 900 THE COFACTOR NADH AND THE 2- PYRIDONE INHIBITOR PT172 REMARK 900 RELATED ID: 3ZU2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH REMARK 900 THE COFACTOR NADH (SIRAS) REMARK 900 RELATED ID: 3ZU5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH REMARK 900 THE COFACTOR NADH AND THE 2- PYRIDONE INHIBITOR PT173 DBREF 3ZU3 A 1 399 UNP Q8Z9U1 Y4104_YERPE 1 399 SEQADV 3ZU3 GLY A -5 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU3 SER A -4 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU3 HIS A -3 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU3 MET A -2 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU3 LEU A -1 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU3 GLU A 0 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU3 SER A 276 UNP Q8Z9U1 THR 276 VARIANT SEQRES 1 A 405 GLY SER HIS MET LEU GLU MET ILE ILE LYS PRO ARG VAL SEQRES 2 A 405 ARG GLY PHE ILE CYS VAL THR ALA HIS PRO THR GLY CYS SEQRES 3 A 405 GLU ALA ASN VAL LYS LYS GLN ILE ASP TYR VAL THR THR SEQRES 4 A 405 GLU GLY PRO ILE ALA ASN GLY PRO LYS ARG VAL LEU VAL SEQRES 5 A 405 ILE GLY ALA SER THR GLY TYR GLY LEU ALA ALA ARG ILE SEQRES 6 A 405 THR ALA ALA PHE GLY CYS GLY ALA ASP THR LEU GLY VAL SEQRES 7 A 405 PHE PHE GLU ARG PRO GLY GLU GLU GLY LYS PRO GLY THR SEQRES 8 A 405 SER GLY TRP TYR ASN SER ALA ALA PHE HIS LYS PHE ALA SEQRES 9 A 405 ALA GLN LYS GLY LEU TYR ALA LYS SER ILE ASN GLY ASP SEQRES 10 A 405 ALA PHE SER ASP GLU ILE LYS GLN LEU THR ILE ASP ALA SEQRES 11 A 405 ILE LYS GLN ASP LEU GLY GLN VAL ASP GLN VAL ILE TYR SEQRES 12 A 405 SER LEU ALA SER PRO ARG ARG THR HIS PRO LYS THR GLY SEQRES 13 A 405 GLU VAL PHE ASN SER ALA LEU LYS PRO ILE GLY ASN ALA SEQRES 14 A 405 VAL ASN LEU ARG GLY LEU ASP THR ASP LYS GLU VAL ILE SEQRES 15 A 405 LYS GLU SER VAL LEU GLN PRO ALA THR GLN SER GLU ILE SEQRES 16 A 405 ASP SER THR VAL ALA VAL MET GLY GLY GLU ASP TRP GLN SEQRES 17 A 405 MET TRP ILE ASP ALA LEU LEU ASP ALA GLY VAL LEU ALA SEQRES 18 A 405 GLU GLY ALA GLN THR THR ALA PHE THR TYR LEU GLY GLU SEQRES 19 A 405 LYS ILE THR HIS ASP ILE TYR TRP ASN GLY SER ILE GLY SEQRES 20 A 405 ALA ALA LYS LYS ASP LEU ASP GLN LYS VAL LEU ALA ILE SEQRES 21 A 405 ARG GLU SER LEU ALA ALA HIS GLY GLY GLY ASP ALA ARG SEQRES 22 A 405 VAL SER VAL LEU LYS ALA VAL VAL SER GLN ALA SER SER SEQRES 23 A 405 ALA ILE PRO MET MET PRO LEU TYR LEU SER LEU LEU PHE SEQRES 24 A 405 LYS VAL MET LYS GLU LYS GLY THR HIS GLU GLY CYS ILE SEQRES 25 A 405 GLU GLN VAL TYR SER LEU TYR LYS ASP SER LEU CYS GLY SEQRES 26 A 405 ASP SER PRO HIS MET ASP GLN GLU GLY ARG LEU ARG ALA SEQRES 27 A 405 ASP TYR LYS GLU LEU ASP PRO GLU VAL GLN ASN GLN VAL SEQRES 28 A 405 GLN GLN LEU TRP ASP GLN VAL THR ASN ASP ASN ILE TYR SEQRES 29 A 405 GLN LEU THR ASP PHE VAL GLY TYR LYS SER GLU PHE LEU SEQRES 30 A 405 ASN LEU PHE GLY PHE GLY ILE ASP GLY VAL ASP TYR ASP SEQRES 31 A 405 ALA ASP VAL ASN PRO ASP VAL LYS ILE PRO ASN LEU ILE SEQRES 32 A 405 GLN GLY HET NAI A1400 44 HET GOL A1401 6 HET GOL A1402 6 HET GOL A1403 6 HET GOL A1404 6 HET NA A1405 1 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN NAI NADH HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 NA NA 1+ FORMUL 8 HOH *422(H2 O) HELIX 1 1 GLY A -5 GLU A 0 5 6 HELIX 2 2 HIS A 16 GLY A 35 1 20 HELIX 3 3 THR A 51 GLY A 66 1 16 HELIX 4 4 THR A 85 LYS A 101 1 17 HELIX 5 5 SER A 114 LEU A 129 1 16 HELIX 6 6 THR A 185 GLY A 197 1 13 HELIX 7 7 GLY A 198 GLY A 212 1 15 HELIX 8 8 GLU A 228 HIS A 232 5 5 HELIX 9 9 GLY A 238 ALA A 260 1 23 HELIX 10 10 SER A 276 ALA A 281 1 6 HELIX 11 11 MET A 284 GLY A 300 1 17 HELIX 12 12 GLY A 304 SER A 316 1 13 HELIX 13 13 ASP A 333 ASP A 338 1 6 HELIX 14 14 ASP A 338 VAL A 352 1 15 HELIX 15 15 ASN A 356 THR A 361 1 6 HELIX 16 16 ASP A 362 PHE A 374 1 13 SHEET 1 AA 2 VAL A 7 ARG A 8 0 SHEET 2 AA 2 ILE A 11 CYS A 12 -1 O ILE A 11 N ARG A 8 SHEET 1 AB 8 LEU A 330 ARG A 331 0 SHEET 2 AB 8 ASP A 265 VAL A 270 1 O VAL A 268 N LEU A 330 SHEET 3 AB 8 LEU A 214 THR A 224 1 O ALA A 218 N ASP A 265 SHEET 4 AB 8 VAL A 132 TYR A 137 1 O VAL A 132 N ALA A 215 SHEET 5 AB 8 ARG A 43 ILE A 47 1 O ARG A 43 N ASP A 133 SHEET 6 AB 8 ASP A 68 PHE A 73 1 O ASP A 68 N VAL A 44 SHEET 7 AB 8 ALA A 105 ASN A 109 1 O LYS A 106 N GLY A 71 SHEET 8 AB 8 LEU A 396 GLN A 398 1 O ILE A 397 N ASN A 109 SHEET 1 AC 2 ARG A 143 THR A 145 0 SHEET 2 AC 2 VAL A 152 ASN A 154 -1 O PHE A 153 N ARG A 144 SHEET 1 AD 2 VAL A 164 ASP A 170 0 SHEET 2 AD 2 VAL A 175 LEU A 181 -1 O VAL A 175 N ASP A 170 LINK O THR A 51 NA NA A1405 1555 1555 2.97 LINK O SER A 138 NA NA A1405 1555 1555 3.15 LINK OG ASER A 138 NA NA A1405 1555 1555 2.92 LINK O5B NAI A1400 NA NA A1405 1555 1555 3.17 SITE 1 AC1 37 GLY A 48 ALA A 49 SER A 50 THR A 51 SITE 2 AC1 37 GLY A 52 TYR A 53 PHE A 73 PHE A 74 SITE 3 AC1 37 GLU A 75 GLY A 110 ASP A 111 ALA A 112 SITE 4 AC1 37 PHE A 113 SER A 138 LEU A 139 ALA A 140 SITE 5 AC1 37 SER A 141 PHE A 223 THR A 224 TYR A 225 SITE 6 AC1 37 LYS A 244 LYS A 272 ALA A 273 VAL A 274 SITE 7 AC1 37 SER A 276 ALA A 278 SER A 279 NA A1405 SITE 8 AC1 37 HOH A2105 HOH A2108 HOH A2192 HOH A2197 SITE 9 AC1 37 HOH A2199 HOH A2269 HOH A2304 HOH A2308 SITE 10 AC1 37 HOH A2419 SITE 1 AC2 8 ASP A 172 GLU A 303 SER A 311 TYR A 334 SITE 2 AC2 8 LYS A 335 HOH A2298 HOH A2420 HOH A2421 SITE 1 AC3 7 ASP A 111 PHE A 113 ARG A 143 ARG A 144 SITE 2 AC3 7 THR A 145 HOH A2201 HOH A2422 SITE 1 AC4 6 GLU A 79 GLU A 80 LYS A 106 ASP A 390 SITE 2 AC4 6 ASN A 395 ILE A 397 SITE 1 AC5 7 PRO A 77 TRP A 88 ASP A 390 LYS A 392 SITE 2 AC5 7 HOH A2412 HOH A2416 HOH A2423 SITE 1 AC6 5 GLY A 48 THR A 51 GLY A 54 SER A 138 SITE 2 AC6 5 NAI A1400 CRYST1 102.160 102.160 84.761 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.005651 0.000000 0.00000 SCALE2 0.000000 0.011303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011798 0.00000