HEADER OXIDOREDUCTASE 13-JUL-11 3ZU5 TITLE STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH TITLE 2 THE COFACTOR NADH AND THE 2-PYRIDONE INHIBITOR PT173 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REDUCTASE YPO4104/Y4119/YP_4011; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENOYL-ACP REDUCTASE; COMPND 5 EC: 1.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS OXIDOREDUCTASE, FATTY ACID BIOSYNTHESIS II, SHORT-CHAIN DEHYDROGENASE KEYWDS 2 REDUCTASE SUPERFAMILY, STRUCTURE-BASED DRUG DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.HIRSCHBECK,J.KUPER,P.J.TONGE,C.KISKER REVDAT 4 08-MAY-24 3ZU5 1 REMARK LINK REVDAT 3 05-JUL-17 3ZU5 1 REMARK REVDAT 2 28-MAR-12 3ZU5 1 JRNL REVDAT 1 18-JAN-12 3ZU5 0 JRNL AUTH M.W.HIRSCHBECK,J.KUPER,H.LU,N.LIU,C.NECKLES,S.SHAH,S.WAGNER, JRNL AUTH 2 C.A.SOTRIFFER,P.J.TONGE,C.KISKER JRNL TITL STRUCTURE OF THE YERSINIA PESTIS FABV ENOYL-ACP REDUCTASE JRNL TITL 2 AND ITS INTERACTION WITH TWO 2-PYRIDONE INHIBITORS JRNL REF STRUCTURE V. 20 89 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22244758 JRNL DOI 10.1016/J.STR.2011.07.019 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1739 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.41000 REMARK 3 B22 (A**2) : 1.41000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.71000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3430 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4668 ; 1.510 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 5.982 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;38.272 ;25.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 569 ;14.355 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 521 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2598 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2135 ; 0.822 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3428 ; 1.511 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 2.439 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1233 ; 3.890 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2645 -39.0237 -6.8921 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0535 REMARK 3 T33: 0.0630 T12: -0.0302 REMARK 3 T13: -0.0099 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.9938 L22: 0.7394 REMARK 3 L33: 1.7324 L12: 0.8836 REMARK 3 L13: 0.6913 L23: 0.1925 REMARK 3 S TENSOR REMARK 3 S11: -0.1319 S12: 0.1785 S13: 0.1316 REMARK 3 S21: -0.0005 S22: 0.0530 S23: 0.0701 REMARK 3 S31: -0.0867 S32: 0.1799 S33: 0.0789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37% PEG 4000, 150 MM AMMONIUM SULFATE, REMARK 280 100 MM MES PH 5.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.18333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.36667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.36667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 216 O HOH A 2126 1.80 REMARK 500 O SER A 257 O HOH A 2143 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 10 -8.15 70.96 REMARK 500 SER A 138 44.51 -140.87 REMARK 500 SER A 138 44.10 -140.51 REMARK 500 LEU A 157 78.96 -116.94 REMARK 500 TYR A 235 -84.06 -98.04 REMARK 500 HIS A 261 65.83 -108.41 REMARK 500 HIS A 261 73.16 -101.88 REMARK 500 SER A 280 43.22 -89.00 REMARK 500 SER A 321 78.97 -119.90 REMARK 500 ASP A 362 52.81 -97.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 1-(3-AMINO-2-METHYLBENZYL)-4-HEXYLPYRIDIN-2(1H)-ONE (AEW): REMARK 600 INHIBITOR PT173 (PETER TONGE) REMARK 600 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE (NAI): NADH REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 51 O REMARK 620 2 SER A 138 OG 144.8 REMARK 620 3 NAI A1400 O5B 80.1 134.5 REMARK 620 4 NAI A1400 O2N 90.8 101.0 78.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AEW A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZU3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH REMARK 900 THE COFACTOR NADH (MR, CLEAVED HISTAG) REMARK 900 RELATED ID: 3ZU2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH REMARK 900 THE COFACTOR NADH (SIRAS) REMARK 900 RELATED ID: 3ZU4 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENOYL-ACP REDUCTASE FABV FROM YERSINIA PESTIS WITH REMARK 900 THE COFACTOR NADH AND THE 2- PYRIDONE INHIBITOR PT172 REMARK 999 REMARK 999 SEQUENCE REMARK 999 T276S VARIANT YP_002348955.1 DBREF 3ZU5 A 1 399 UNP Q8Z9U1 Y4104_YERPE 1 399 SEQADV 3ZU5 GLY A -5 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU5 SER A -4 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU5 HIS A -3 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU5 MET A -2 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU5 LEU A -1 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU5 GLU A 0 UNP Q8Z9U1 EXPRESSION TAG SEQADV 3ZU5 SER A 276 UNP Q8Z9U1 THR 276 VARIANT SEQRES 1 A 405 GLY SER HIS MET LEU GLU MET ILE ILE LYS PRO ARG VAL SEQRES 2 A 405 ARG GLY PHE ILE CYS VAL THR ALA HIS PRO THR GLY CYS SEQRES 3 A 405 GLU ALA ASN VAL LYS LYS GLN ILE ASP TYR VAL THR THR SEQRES 4 A 405 GLU GLY PRO ILE ALA ASN GLY PRO LYS ARG VAL LEU VAL SEQRES 5 A 405 ILE GLY ALA SER THR GLY TYR GLY LEU ALA ALA ARG ILE SEQRES 6 A 405 THR ALA ALA PHE GLY CYS GLY ALA ASP THR LEU GLY VAL SEQRES 7 A 405 PHE PHE GLU ARG PRO GLY GLU GLU GLY LYS PRO GLY THR SEQRES 8 A 405 SER GLY TRP TYR ASN SER ALA ALA PHE HIS LYS PHE ALA SEQRES 9 A 405 ALA GLN LYS GLY LEU TYR ALA LYS SER ILE ASN GLY ASP SEQRES 10 A 405 ALA PHE SER ASP GLU ILE LYS GLN LEU THR ILE ASP ALA SEQRES 11 A 405 ILE LYS GLN ASP LEU GLY GLN VAL ASP GLN VAL ILE TYR SEQRES 12 A 405 SER LEU ALA SER PRO ARG ARG THR HIS PRO LYS THR GLY SEQRES 13 A 405 GLU VAL PHE ASN SER ALA LEU LYS PRO ILE GLY ASN ALA SEQRES 14 A 405 VAL ASN LEU ARG GLY LEU ASP THR ASP LYS GLU VAL ILE SEQRES 15 A 405 LYS GLU SER VAL LEU GLN PRO ALA THR GLN SER GLU ILE SEQRES 16 A 405 ASP SER THR VAL ALA VAL MET GLY GLY GLU ASP TRP GLN SEQRES 17 A 405 MET TRP ILE ASP ALA LEU LEU ASP ALA GLY VAL LEU ALA SEQRES 18 A 405 GLU GLY ALA GLN THR THR ALA PHE THR TYR LEU GLY GLU SEQRES 19 A 405 LYS ILE THR HIS ASP ILE TYR TRP ASN GLY SER ILE GLY SEQRES 20 A 405 ALA ALA LYS LYS ASP LEU ASP GLN LYS VAL LEU ALA ILE SEQRES 21 A 405 ARG GLU SER LEU ALA ALA HIS GLY GLY GLY ASP ALA ARG SEQRES 22 A 405 VAL SER VAL LEU LYS ALA VAL VAL SER GLN ALA SER SER SEQRES 23 A 405 ALA ILE PRO MET MET PRO LEU TYR LEU SER LEU LEU PHE SEQRES 24 A 405 LYS VAL MET LYS GLU LYS GLY THR HIS GLU GLY CYS ILE SEQRES 25 A 405 GLU GLN VAL TYR SER LEU TYR LYS ASP SER LEU CYS GLY SEQRES 26 A 405 ASP SER PRO HIS MET ASP GLN GLU GLY ARG LEU ARG ALA SEQRES 27 A 405 ASP TYR LYS GLU LEU ASP PRO GLU VAL GLN ASN GLN VAL SEQRES 28 A 405 GLN GLN LEU TRP ASP GLN VAL THR ASN ASP ASN ILE TYR SEQRES 29 A 405 GLN LEU THR ASP PHE VAL GLY TYR LYS SER GLU PHE LEU SEQRES 30 A 405 ASN LEU PHE GLY PHE GLY ILE ASP GLY VAL ASP TYR ASP SEQRES 31 A 405 ALA ASP VAL ASN PRO ASP VAL LYS ILE PRO ASN LEU ILE SEQRES 32 A 405 GLN GLY HET NAI A1400 44 HET AEW A1401 22 HET NA A1402 1 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM AEW 1-(3-AMINO-2-METHYLBENZYL)-4-HEXYLPYRIDIN-2(1H)-ONE HETNAM NA SODIUM ION HETSYN NAI NADH FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 AEW C19 H26 N2 O FORMUL 4 NA NA 1+ FORMUL 5 HOH *214(H2 O) HELIX 1 1 HIS A 16 GLY A 35 1 20 HELIX 2 2 THR A 51 GLY A 64 1 14 HELIX 3 3 THR A 85 LYS A 101 1 17 HELIX 4 4 SER A 114 LEU A 129 1 16 HELIX 5 5 THR A 185 GLY A 197 1 13 HELIX 6 6 GLY A 198 GLY A 212 1 15 HELIX 7 7 GLU A 228 HIS A 232 5 5 HELIX 8 8 GLY A 238 ALA A 260 1 23 HELIX 9 9 ALA A 278 ILE A 282 5 5 HELIX 10 10 PRO A 283 GLY A 300 1 18 HELIX 11 11 GLY A 304 SER A 316 1 13 HELIX 12 12 ASP A 333 ASP A 338 1 6 HELIX 13 13 ASP A 338 ASP A 350 1 13 HELIX 14 14 ASN A 356 THR A 361 1 6 HELIX 15 15 ASP A 362 PHE A 374 1 13 SHEET 1 AA 2 VAL A 7 ARG A 8 0 SHEET 2 AA 2 ILE A 11 CYS A 12 -1 O ILE A 11 N ARG A 8 SHEET 1 AB 8 LEU A 330 ARG A 331 0 SHEET 2 AB 8 ASP A 265 VAL A 270 1 O VAL A 268 N LEU A 330 SHEET 3 AB 8 LEU A 214 THR A 224 1 O ALA A 218 N ASP A 265 SHEET 4 AB 8 VAL A 132 TYR A 137 1 O VAL A 132 N ALA A 215 SHEET 5 AB 8 ARG A 43 ILE A 47 1 O ARG A 43 N ASP A 133 SHEET 6 AB 8 ASP A 68 PHE A 73 1 O ASP A 68 N VAL A 44 SHEET 7 AB 8 ALA A 105 ASN A 109 1 O LYS A 106 N GLY A 71 SHEET 8 AB 8 LEU A 396 GLN A 398 1 O ILE A 397 N ASN A 109 SHEET 1 AC 2 ARG A 143 THR A 145 0 SHEET 2 AC 2 VAL A 152 ASN A 154 -1 O PHE A 153 N ARG A 144 SHEET 1 AD 2 VAL A 164 ASP A 170 0 SHEET 2 AD 2 VAL A 175 LEU A 181 -1 O VAL A 175 N ASP A 170 LINK O THR A 51 NA NA A1402 1555 1555 2.88 LINK OG ASER A 138 NA NA A1402 1555 1555 2.88 LINK O5B NAI A1400 NA NA A1402 1555 1555 3.15 LINK O2N NAI A1400 NA NA A1402 1555 1555 3.16 SITE 1 AC1 33 GLY A 48 ALA A 49 SER A 50 THR A 51 SITE 2 AC1 33 GLY A 52 TYR A 53 PHE A 73 PHE A 74 SITE 3 AC1 33 GLU A 75 GLY A 110 ASP A 111 ALA A 112 SITE 4 AC1 33 PHE A 113 SER A 138 LEU A 139 ALA A 140 SITE 5 AC1 33 PHE A 223 THR A 224 TYR A 225 LYS A 244 SITE 6 AC1 33 LEU A 271 LYS A 272 ALA A 273 VAL A 274 SITE 7 AC1 33 GLN A 277 AEW A1401 NA A1402 HOH A2052 SITE 8 AC1 33 HOH A2090 HOH A2095 HOH A2151 HOH A2152 SITE 9 AC1 33 HOH A2214 SITE 1 AC2 6 ALA A 140 TYR A 225 TYR A 235 MET A 285 SITE 2 AC2 6 NAI A1400 HOH A2096 SITE 1 AC3 6 GLY A 48 THR A 51 TYR A 53 GLY A 54 SITE 2 AC3 6 SER A 138 NAI A1400 CRYST1 101.770 101.770 84.550 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009826 0.005673 0.000000 0.00000 SCALE2 0.000000 0.011346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011827 0.00000