HEADER HYDROLASE 18-JUL-11 3ZUA TITLE A C39-LIKE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-HEMOLYSIN TRANSLOCATION ATP-BINDING PROTEIN HLYB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLD; COMPND 5 EC: 3.4.22.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS C39 PEPTIDASE-LIKE DOMAIN, ABC TRANSPORTER, HAEMOLYSIN, HYDROLASE, KEYWDS 2 HETERONUCLEAR NMR EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.LECHER,C.K.W.SCHWARZ,M.STOLDT,S.S.H.SMITS,D.WILLBOLD,L.SCHMITT REVDAT 5 07-NOV-12 3ZUA 1 TITLE REVDAT 4 31-OCT-12 3ZUA 1 JRNL REVDAT 3 10-OCT-12 3ZUA 1 JRNL REVDAT 2 29-AUG-12 3ZUA 1 JRNL REVDAT 1 01-AUG-12 3ZUA 0 JRNL AUTH J.LECHER,C.K.W.SCHWARZ,M.STOLDT,S.S.H.SMITS,D.WILLBOLD, JRNL AUTH 2 L.SCHMITT JRNL TITL AN RTX TRANSPORTER TETHERS ITS UNFOLDED SUBSTRATE DURING JRNL TITL 2 SECRETION VIA A UNIQUE N-TERMINAL DOMAIN. JRNL REF STRUCTURE V. 20 1778 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22959622 JRNL DOI 10.1016/J.STR.2012.08.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 WITH ARIA PATCHES REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, REMARK 3 : RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND REMARK 3 IN THE JRNL CITATION ABOVE. REMARK 4 REMARK 4 3ZUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-11. REMARK 100 THE PDBE ID CODE IS EBI-49046. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY (ALIPHATIC, AROMATIC, REMARK 210 AMID) REMARK 210 SPECTROMETER FIELD STRENGTH : 900 REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DANGLE 1.1, VNMRJ 2.3A, REMARK 210 ARIA 2.3.1, AZARA 2.8, REMARK 210 CCPNMR ANALYSIS 2.1, REMARK 210 NMRPIPE 5.4.2010.250.17.50, REMARK 210 TALOSPLUS 3.60F1.2011.080. REMARK 210 13.41 REMARK 210 METHOD USED : ARIA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED BY NOE DERIVED REMARK 210 DISTANCE RESTRAINTS FROM (1H-1H-13C)-NOESY-HSQC ALIPHATIC REMARK 210 & AROMATIC AND (1H-15N-1H)-HSQC-NOESY USING CHEMICAL SHIFT REMARK 210 ASSIGNMENTS DEPOSITED IN BMRB ENTRY 17403. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 12 HE ARG A 104 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A -3 79.10 -163.50 REMARK 500 1 MET A -2 27.83 -148.92 REMARK 500 1 ASN A 0 -43.90 -142.40 REMARK 500 1 ASP A 2 -64.65 67.80 REMARK 500 1 HIS A 5 70.19 -66.82 REMARK 500 1 LYS A 6 107.92 -56.23 REMARK 500 1 VAL A 25 114.36 -168.56 REMARK 500 1 ASP A 35 32.81 -98.60 REMARK 500 1 LYS A 58 120.65 -170.48 REMARK 500 1 ALA A 136 58.82 -98.36 REMARK 500 2 ALA A -3 -179.80 63.17 REMARK 500 2 ASN A 0 -44.90 -149.08 REMARK 500 2 ASP A 2 179.04 49.70 REMARK 500 2 SER A 3 42.89 -144.53 REMARK 500 2 CYS A 4 121.58 62.54 REMARK 500 2 HIS A 5 91.06 50.93 REMARK 500 2 VAL A 25 112.62 -173.92 REMARK 500 2 SER A 129 54.94 -105.19 REMARK 500 2 VAL A 131 29.64 43.98 REMARK 500 2 ALA A 136 33.52 -95.42 REMARK 500 3 ALA A -3 73.65 57.24 REMARK 500 3 ALA A -1 65.11 -69.36 REMARK 500 3 ASN A 0 67.60 -179.85 REMARK 500 3 SER A 1 81.63 61.41 REMARK 500 3 HIS A 5 111.61 -173.49 REMARK 500 3 SER A 24 152.65 -48.98 REMARK 500 3 VAL A 25 116.42 -162.59 REMARK 500 3 ASP A 35 33.96 -98.54 REMARK 500 3 ASN A 94 40.08 73.30 REMARK 500 3 ARG A 104 31.76 70.05 REMARK 500 3 LEU A 135 74.63 -65.67 REMARK 500 4 ASN A 0 50.91 -145.51 REMARK 500 4 SER A 1 -62.47 69.37 REMARK 500 4 ASP A 2 -74.86 -178.43 REMARK 500 4 HIS A 5 96.36 -172.79 REMARK 500 4 VAL A 25 118.05 -164.39 REMARK 500 4 ARG A 104 34.40 71.73 REMARK 500 4 ALA A 136 59.08 -179.92 REMARK 500 5 ALA A -3 64.06 66.31 REMARK 500 5 SER A 1 27.31 -161.70 REMARK 500 5 ASP A 2 -176.38 50.24 REMARK 500 5 CYS A 4 -42.48 -153.91 REMARK 500 5 HIS A 5 145.02 -174.84 REMARK 500 5 VAL A 25 105.17 -161.88 REMARK 500 5 ASP A 35 34.26 -97.04 REMARK 500 5 LYS A 58 130.13 -173.01 REMARK 500 6 MET A -2 111.30 177.98 REMARK 500 6 SER A 1 -66.22 68.90 REMARK 500 6 ASN A 22 30.48 72.29 REMARK 500 6 VAL A 25 105.57 -168.19 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AS A RESULT OF CLONING STRATEGY AND PROTEASE DIGESTION, REMARK 999 THE SEQUENCE N-TERMINAL TO THE WT POSITION 2 IS GAMANS. DBREF 3ZUA A 2 137 UNP Q47258 HLYB3_ECOLX 2 137 SEQADV 3ZUA GLY A -4 UNP Q47258 EXPRESSION TAG SEQADV 3ZUA ALA A -3 UNP Q47258 EXPRESSION TAG SEQADV 3ZUA MET A -2 UNP Q47258 EXPRESSION TAG SEQADV 3ZUA ALA A -1 UNP Q47258 EXPRESSION TAG SEQADV 3ZUA ASN A 0 UNP Q47258 EXPRESSION TAG SEQADV 3ZUA SER A 1 UNP Q47258 EXPRESSION TAG SEQRES 1 A 142 GLY ALA MET ALA ASN SER ASP SER CYS HIS LYS ILE ASP SEQRES 2 A 142 TYR GLY LEU TYR ALA LEU GLU ILE LEU ALA GLN TYR HIS SEQRES 3 A 142 ASN VAL SER VAL ASN PRO GLU GLU ILE LYS HIS ARG PHE SEQRES 4 A 142 ASP THR ASP GLY THR GLY LEU GLY LEU THR SER TRP LEU SEQRES 5 A 142 LEU ALA ALA LYS SER LEU GLU LEU LYS VAL LYS GLN VAL SEQRES 6 A 142 LYS LYS THR ILE ASP ARG LEU ASN PHE ILE SER LEU PRO SEQRES 7 A 142 ALA LEU VAL TRP ARG GLU ASP GLY ARG HIS PHE ILE LEU SEQRES 8 A 142 THR LYS VAL SER LYS GLU ALA ASN ARG TYR LEU ILE PHE SEQRES 9 A 142 ASP LEU GLU GLN ARG ASN PRO ARG VAL LEU GLU GLN SER SEQRES 10 A 142 GLU PHE GLU ALA LEU TYR GLN GLY HIS ILE ILE LEU ILE SEQRES 11 A 142 ALA SER ARG SER SER VAL ALA GLY LYS LEU ALA LYS HELIX 1 1 ASP A 8 HIS A 21 1 14 HELIX 2 2 ASN A 26 PHE A 34 1 9 HELIX 3 3 GLY A 42 SER A 52 1 11 HELIX 4 4 THR A 63 ASN A 68 1 6 HELIX 5 5 GLN A 111 TYR A 118 1 8 SHEET 1 AA 2 LEU A 55 LYS A 61 0 SHEET 2 AA 2 HIS A 121 SER A 127 -1 O ILE A 122 N VAL A 60 SHEET 1 AB 4 ALA A 74 VAL A 76 0 SHEET 2 AB 4 PHE A 84 VAL A 89 -1 O PHE A 84 N VAL A 76 SHEET 3 AB 4 ARG A 95 ASP A 100 -1 O LEU A 97 N THR A 87 SHEET 4 AB 4 ASN A 105 GLU A 110 -1 O ASN A 105 N ASP A 100 CISPEP 1 LEU A 72 PRO A 73 1 0.50 CISPEP 2 LEU A 72 PRO A 73 2 0.18 CISPEP 3 LEU A 72 PRO A 73 3 0.10 CISPEP 4 LEU A 72 PRO A 73 4 0.20 CISPEP 5 LEU A 72 PRO A 73 5 0.30 CISPEP 6 LEU A 72 PRO A 73 6 0.06 CISPEP 7 LEU A 72 PRO A 73 7 0.08 CISPEP 8 LEU A 72 PRO A 73 8 0.45 CISPEP 9 LEU A 72 PRO A 73 9 0.22 CISPEP 10 LEU A 72 PRO A 73 10 0.26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1