HEADER IMMUNE SYSTEM 19-JUL-11 3ZUO TITLE OMCI IN COMPLEX WITH LEUKOTRIENE B4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT INHIBITOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: OMCI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORNITHODOROS MOUBATA; SOURCE 3 ORGANISM_TAXID: 6938; SOURCE 4 ORGAN: SALIVARY GLAND; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: WCM105 KEYWDS IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.ROVERSI,I.MAILLET,D.TOGBE,I.COUILLIN,V.F.J.QUESNIAUX,M.TEIXEIRA, AUTHOR 2 N.AHMAT,O.LISSINA,W.BOLAND,K.PLOSS,J.J.E.CAESAR,S.LEONHARTSBERGER, AUTHOR 3 B.RYFFEL,S.M.LEA,M.A.NUNN REVDAT 4 20-DEC-23 3ZUO 1 REMARK REVDAT 3 17-JUL-13 3ZUO 1 JRNL REVDAT 2 15-MAY-13 3ZUO 1 JRNL REVDAT 1 01-AUG-12 3ZUO 0 JRNL AUTH P.ROVERSI,B.RYFFEL,D.TOGBE,I.MAILLET,M.TEIXEIRA,N.AHMAT, JRNL AUTH 2 G.C.PAESEN,O.LISSINA,W.BOLAND,K.PLOSS,J.J.CAESAR, JRNL AUTH 3 S.LEONHARTSBERGER,S.M.LEA,M.A.NUNN JRNL TITL BIFUNCTIONAL LIPOCALIN AMELIORATES MURINE IMMUNE JRNL TITL 2 COMPLEX-INDUCED ACUTE LUNG INJURY. JRNL REF J.BIOL.CHEM. V. 288 18789 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23625922 JRNL DOI 10.1074/JBC.M112.420331 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.ROVERSI,O.LISSINA,S.JOHNSON,N.AHMAT,G.C.PAESEN,K.PLOSS, REMARK 1 AUTH 2 W.BOLAND,M.A.NUNN,S.M.LEA REMARK 1 TITL THE STRUCTURE OF OMCI, A NOVEL LIPOCALIN INHIBITOR OF THE REMARK 1 TITL 2 COMPLEMENT SYSTEM. REMARK 1 REF J.MOL.BIOL. V. 369 784 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17445829 REMARK 1 DOI 10.1016/J.JMB.2007.03.064 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 45917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2315 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2768 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2552 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2633 REMARK 3 BIN R VALUE (WORKING SET) : 0.2538 REMARK 3 BIN FREE R VALUE : 0.2824 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.07350 REMARK 3 B22 (A**2) : 6.69300 REMARK 3 B33 (A**2) : 2.38040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.29770 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.275 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.178 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.144 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.308 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.147 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9037 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 16214 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1956 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 158 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1339 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9033 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 587 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9231 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.87 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.38 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 3ZUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290049101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00384 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 112.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZUI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 4000, 0.2 M SODIUM ACETATE, REMARK 280 TRIS 0.1 M PH 8.4. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.39450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 19 REMARK 465 SER A 20 REMARK 465 GLU A 21 REMARK 465 SER A 22 REMARK 465 LYS A 65 REMARK 465 GLN A 66 REMARK 465 ASP A 67 REMARK 465 ASN A 68 REMARK 465 ASP B 19 REMARK 465 SER B 20 REMARK 465 GLU B 21 REMARK 465 SER B 22 REMARK 465 ASP B 23 REMARK 465 ASP C 19 REMARK 465 SER C 20 REMARK 465 GLU C 21 REMARK 465 SER C 22 REMARK 465 ASP D 19 REMARK 465 SER D 20 REMARK 465 GLU D 21 REMARK 465 SER D 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 84.26 -161.45 REMARK 500 SER A 156 -117.57 56.41 REMARK 500 LEU A 165 41.42 -105.42 REMARK 500 LYS A 166 52.97 -117.73 REMARK 500 ASP B 67 -107.56 59.75 REMARK 500 ASN B 78 99.01 -165.37 REMARK 500 ASP B 92 83.00 -150.96 REMARK 500 ALA B 155 32.40 -97.00 REMARK 500 TYR B 162 76.83 -118.98 REMARK 500 LEU B 165 43.44 -108.79 REMARK 500 ALA C 62 64.55 -155.65 REMARK 500 ASP C 67 -99.80 57.75 REMARK 500 ASN C 78 80.42 -161.76 REMARK 500 ASP C 92 85.05 -160.82 REMARK 500 LYS C 166 53.31 -110.04 REMARK 500 ASP D 67 -126.97 59.53 REMARK 500 ASN D 78 77.11 -159.92 REMARK 500 ALA D 155 45.25 -96.12 REMARK 500 LYS D 166 56.35 -106.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "CA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "DA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LTB A 1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LTB B 1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LTB C 1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LTB D 1170 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CM9 RELATED DB: PDB REMARK 900 THE COMPLEMENT INHIBITOR OMCI IN COMPLEX WITH RICINOLEIC ACID REMARK 900 RELATED ID: 2CM4 RELATED DB: PDB REMARK 900 THE COMPLEMENT INHIBITOR OMCI IN COMPLEX WITH RICINOLEIC ACID REMARK 900 RELATED ID: 3ZUI RELATED DB: PDB REMARK 900 OMCI IN COMPLEX WITH PALMITOLEIC ACID DBREF 3ZUO A 19 168 UNP Q5YD59 Q5YD59_ORNMO 19 168 DBREF 3ZUO B 19 168 UNP Q5YD59 Q5YD59_ORNMO 19 168 DBREF 3ZUO C 19 168 UNP Q5YD59 Q5YD59_ORNMO 19 168 DBREF 3ZUO D 19 168 UNP Q5YD59 Q5YD59_ORNMO 19 168 SEQRES 1 A 150 ASP SER GLU SER ASP CYS THR GLY SER GLU PRO VAL ASP SEQRES 2 A 150 ALA PHE GLN ALA PHE SER GLU GLY LYS GLU ALA TYR VAL SEQRES 3 A 150 LEU VAL ARG SER THR ASP PRO LYS ALA ARG ASP CYS LEU SEQRES 4 A 150 LYS GLY GLU PRO ALA GLY GLU LYS GLN ASP ASN THR LEU SEQRES 5 A 150 PRO VAL MET MET THR PHE LYS ASN GLY THR ASP TRP ALA SEQRES 6 A 150 SER THR ASP TRP THR PHE THR LEU ASP GLY ALA LYS VAL SEQRES 7 A 150 THR ALA THR LEU GLY ASN LEU THR GLN ASN ARG GLU VAL SEQRES 8 A 150 VAL TYR ASP SER GLN SER HIS HIS CYS HIS VAL ASP LYS SEQRES 9 A 150 VAL GLU LYS GLU VAL PRO ASP TYR GLU MET TRP MET LEU SEQRES 10 A 150 ASP ALA GLY GLY LEU GLU VAL GLU VAL GLU CYS CYS ARG SEQRES 11 A 150 GLN LYS LEU GLU GLU LEU ALA SER GLY ARG ASN GLN MET SEQRES 12 A 150 TYR PRO HIS LEU LYS ASP CYS SEQRES 1 B 150 ASP SER GLU SER ASP CYS THR GLY SER GLU PRO VAL ASP SEQRES 2 B 150 ALA PHE GLN ALA PHE SER GLU GLY LYS GLU ALA TYR VAL SEQRES 3 B 150 LEU VAL ARG SER THR ASP PRO LYS ALA ARG ASP CYS LEU SEQRES 4 B 150 LYS GLY GLU PRO ALA GLY GLU LYS GLN ASP ASN THR LEU SEQRES 5 B 150 PRO VAL MET MET THR PHE LYS ASN GLY THR ASP TRP ALA SEQRES 6 B 150 SER THR ASP TRP THR PHE THR LEU ASP GLY ALA LYS VAL SEQRES 7 B 150 THR ALA THR LEU GLY ASN LEU THR GLN ASN ARG GLU VAL SEQRES 8 B 150 VAL TYR ASP SER GLN SER HIS HIS CYS HIS VAL ASP LYS SEQRES 9 B 150 VAL GLU LYS GLU VAL PRO ASP TYR GLU MET TRP MET LEU SEQRES 10 B 150 ASP ALA GLY GLY LEU GLU VAL GLU VAL GLU CYS CYS ARG SEQRES 11 B 150 GLN LYS LEU GLU GLU LEU ALA SER GLY ARG ASN GLN MET SEQRES 12 B 150 TYR PRO HIS LEU LYS ASP CYS SEQRES 1 C 150 ASP SER GLU SER ASP CYS THR GLY SER GLU PRO VAL ASP SEQRES 2 C 150 ALA PHE GLN ALA PHE SER GLU GLY LYS GLU ALA TYR VAL SEQRES 3 C 150 LEU VAL ARG SER THR ASP PRO LYS ALA ARG ASP CYS LEU SEQRES 4 C 150 LYS GLY GLU PRO ALA GLY GLU LYS GLN ASP ASN THR LEU SEQRES 5 C 150 PRO VAL MET MET THR PHE LYS ASN GLY THR ASP TRP ALA SEQRES 6 C 150 SER THR ASP TRP THR PHE THR LEU ASP GLY ALA LYS VAL SEQRES 7 C 150 THR ALA THR LEU GLY ASN LEU THR GLN ASN ARG GLU VAL SEQRES 8 C 150 VAL TYR ASP SER GLN SER HIS HIS CYS HIS VAL ASP LYS SEQRES 9 C 150 VAL GLU LYS GLU VAL PRO ASP TYR GLU MET TRP MET LEU SEQRES 10 C 150 ASP ALA GLY GLY LEU GLU VAL GLU VAL GLU CYS CYS ARG SEQRES 11 C 150 GLN LYS LEU GLU GLU LEU ALA SER GLY ARG ASN GLN MET SEQRES 12 C 150 TYR PRO HIS LEU LYS ASP CYS SEQRES 1 D 150 ASP SER GLU SER ASP CYS THR GLY SER GLU PRO VAL ASP SEQRES 2 D 150 ALA PHE GLN ALA PHE SER GLU GLY LYS GLU ALA TYR VAL SEQRES 3 D 150 LEU VAL ARG SER THR ASP PRO LYS ALA ARG ASP CYS LEU SEQRES 4 D 150 LYS GLY GLU PRO ALA GLY GLU LYS GLN ASP ASN THR LEU SEQRES 5 D 150 PRO VAL MET MET THR PHE LYS ASN GLY THR ASP TRP ALA SEQRES 6 D 150 SER THR ASP TRP THR PHE THR LEU ASP GLY ALA LYS VAL SEQRES 7 D 150 THR ALA THR LEU GLY ASN LEU THR GLN ASN ARG GLU VAL SEQRES 8 D 150 VAL TYR ASP SER GLN SER HIS HIS CYS HIS VAL ASP LYS SEQRES 9 D 150 VAL GLU LYS GLU VAL PRO ASP TYR GLU MET TRP MET LEU SEQRES 10 D 150 ASP ALA GLY GLY LEU GLU VAL GLU VAL GLU CYS CYS ARG SEQRES 11 D 150 GLN LYS LEU GLU GLU LEU ALA SER GLY ARG ASN GLN MET SEQRES 12 D 150 TYR PRO HIS LEU LYS ASP CYS HET LTB A1170 24 HET LTB B1170 24 HET LTB C1170 24 HET LTB D1170 24 HETNAM LTB LEUKOTRIENE B4 FORMUL 5 LTB 4(C20 H32 O4) FORMUL 9 HOH *329(H2 O) HELIX 1 1 ASP A 31 PHE A 36 1 6 HELIX 2 2 SER A 37 LYS A 40 5 4 HELIX 3 3 LEU A 140 SER A 156 1 17 HELIX 4 4 TYR A 162 LYS A 166 5 5 HELIX 5 5 ASP B 31 PHE B 36 1 6 HELIX 6 6 SER B 37 LYS B 40 5 4 HELIX 7 7 LEU B 140 ALA B 155 1 16 HELIX 8 8 TYR B 162 LYS B 166 5 5 HELIX 9 9 ASP C 31 PHE C 36 1 6 HELIX 10 10 SER C 37 LYS C 40 5 4 HELIX 11 11 LEU C 140 SER C 156 1 17 HELIX 12 12 TYR C 162 LYS C 166 5 5 HELIX 13 13 ASP D 31 PHE D 36 1 6 HELIX 14 14 SER D 37 LYS D 40 5 4 HELIX 15 15 LEU D 140 ALA D 155 1 16 HELIX 16 16 TYR D 162 LYS D 166 5 5 SHEET 1 AA 9 TYR A 43 SER A 48 0 SHEET 2 AA 9 ASP A 55 PRO A 61 -1 O LEU A 57 N LEU A 45 SHEET 3 AA 9 LEU A 70 LYS A 77 -1 O MET A 73 N GLU A 60 SHEET 4 AA 9 TRP A 82 ASP A 92 -1 O ALA A 83 N PHE A 76 SHEET 5 AA 9 LYS A 95 LEU A 100 -1 O LYS A 95 N ASP A 92 SHEET 6 AA 9 LEU A 103 ASP A 112 -1 O LEU A 103 N LEU A 100 SHEET 7 AA 9 CYS A 118 GLU A 124 -1 O VAL A 120 N VAL A 110 SHEET 8 AA 9 ASP A 129 LEU A 135 -1 O ASP A 129 N VAL A 123 SHEET 9 AA 9 TYR A 43 SER A 48 -1 O VAL A 44 N MET A 134 SHEET 1 BA 9 TYR B 43 SER B 48 0 SHEET 2 BA 9 ASP B 55 PRO B 61 -1 O LEU B 57 N LEU B 45 SHEET 3 BA 9 THR B 69 LYS B 77 -1 O MET B 73 N GLU B 60 SHEET 4 BA 9 TRP B 82 ASP B 92 -1 O ALA B 83 N PHE B 76 SHEET 5 BA 9 LYS B 95 LEU B 100 -1 O LYS B 95 N ASP B 92 SHEET 6 BA 9 LEU B 103 ASP B 112 -1 O LEU B 103 N LEU B 100 SHEET 7 BA 9 CYS B 118 GLU B 124 -1 O VAL B 120 N TYR B 111 SHEET 8 BA 9 ASP B 129 LEU B 135 -1 O ASP B 129 N VAL B 123 SHEET 9 BA 9 TYR B 43 SER B 48 -1 O VAL B 44 N MET B 134 SHEET 1 CA 9 TYR C 43 SER C 48 0 SHEET 2 CA 9 ASP C 55 PRO C 61 -1 O LEU C 57 N LEU C 45 SHEET 3 CA 9 THR C 69 LYS C 77 -1 O MET C 73 N GLU C 60 SHEET 4 CA 9 TRP C 82 ASP C 92 -1 O ALA C 83 N PHE C 76 SHEET 5 CA 9 LYS C 95 LEU C 100 -1 O LYS C 95 N ASP C 92 SHEET 6 CA 9 LEU C 103 ASP C 112 -1 O LEU C 103 N LEU C 100 SHEET 7 CA 9 CYS C 118 GLU C 124 -1 O VAL C 120 N VAL C 110 SHEET 8 CA 9 ASP C 129 LEU C 135 -1 O ASP C 129 N VAL C 123 SHEET 9 CA 9 TYR C 43 SER C 48 -1 O VAL C 44 N MET C 134 SHEET 1 DA 9 TYR D 43 SER D 48 0 SHEET 2 DA 9 ASP D 55 PRO D 61 -1 O LEU D 57 N LEU D 45 SHEET 3 DA 9 THR D 69 LYS D 77 -1 O MET D 73 N GLU D 60 SHEET 4 DA 9 TRP D 82 ASP D 92 -1 O ALA D 83 N PHE D 76 SHEET 5 DA 9 LYS D 95 LEU D 100 -1 O LYS D 95 N ASP D 92 SHEET 6 DA 9 LEU D 103 ASP D 112 -1 O LEU D 103 N LEU D 100 SHEET 7 DA 9 CYS D 118 GLU D 124 -1 O VAL D 120 N VAL D 110 SHEET 8 DA 9 ASP D 129 LEU D 135 -1 O ASP D 129 N VAL D 123 SHEET 9 DA 9 TYR D 43 SER D 48 -1 O VAL D 44 N MET D 134 SSBOND 1 CYS A 24 CYS A 146 1555 1555 2.03 SSBOND 2 CYS A 56 CYS A 168 1555 1555 2.03 SSBOND 3 CYS A 118 CYS A 147 1555 1555 2.04 SSBOND 4 CYS B 24 CYS B 146 1555 1555 2.03 SSBOND 5 CYS B 56 CYS B 168 1555 1555 2.03 SSBOND 6 CYS B 118 CYS B 147 1555 1555 2.03 SSBOND 7 CYS C 24 CYS C 146 1555 1555 2.03 SSBOND 8 CYS C 56 CYS C 168 1555 1555 2.03 SSBOND 9 CYS C 118 CYS C 147 1555 1555 2.04 SSBOND 10 CYS D 24 CYS D 146 1555 1555 2.03 SSBOND 11 CYS D 56 CYS D 168 1555 1555 2.03 SSBOND 12 CYS D 118 CYS D 147 1555 1555 2.04 CISPEP 1 GLU A 28 PRO A 29 0 -2.60 CISPEP 2 ASN A 78 GLY A 79 0 -2.26 CISPEP 3 GLU B 28 PRO B 29 0 -0.04 CISPEP 4 ASN B 78 GLY B 79 0 -9.45 CISPEP 5 GLU C 28 PRO C 29 0 -1.84 CISPEP 6 ALA C 62 GLY C 63 0 0.49 CISPEP 7 ASN C 78 GLY C 79 0 -0.65 CISPEP 8 GLU D 28 PRO D 29 0 -1.90 CISPEP 9 ASN D 78 GLY D 79 0 -4.04 SITE 1 AC1 19 PHE A 36 GLY A 39 ARG A 54 GLY A 59 SITE 2 AC1 19 GLU A 60 PRO A 61 VAL A 72 MET A 74 SITE 3 AC1 19 THR A 85 TRP A 87 PHE A 89 GLN A 105 SITE 4 AC1 19 ARG A 107 HIS A 119 ASP A 121 TRP A 133 SITE 5 AC1 19 HOH A2036 HOH A2067 HOH A2071 SITE 1 AC2 18 PHE B 36 GLU B 41 TYR B 43 ARG B 54 SITE 2 AC2 18 GLY B 59 PRO B 61 MET B 74 THR B 85 SITE 3 AC2 18 TRP B 87 PHE B 89 ALA B 98 GLN B 105 SITE 4 AC2 18 ARG B 107 HIS B 119 ASP B 121 TRP B 133 SITE 5 AC2 18 HOH B2018 HOH B2044 SITE 1 AC3 20 PHE C 36 ARG C 54 LEU C 57 GLY C 59 SITE 2 AC3 20 GLU C 60 PRO C 61 LEU C 70 MET C 74 SITE 3 AC3 20 PHE C 76 THR C 85 TRP C 87 PHE C 89 SITE 4 AC3 20 GLN C 105 ARG C 107 HIS C 119 ASP C 121 SITE 5 AC3 20 TRP C 133 HOH C2027 HOH C2043 HOH C2046 SITE 1 AC4 15 PHE D 36 ARG D 54 LEU D 57 GLY D 59 SITE 2 AC4 15 PRO D 61 MET D 74 PHE D 76 THR D 85 SITE 3 AC4 15 TRP D 87 PHE D 89 GLN D 105 ARG D 107 SITE 4 AC4 15 HIS D 119 ASP D 121 TRP D 133 CRYST1 41.756 112.789 62.394 90.00 101.89 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023949 0.000000 0.005042 0.00000 SCALE2 0.000000 0.008866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016379 0.00000 MTRIX1 1 -0.818170 0.022900 -0.574510 16.05710 1 MTRIX2 1 0.078300 -0.985450 -0.150800 30.36750 1 MTRIX3 1 -0.569620 -0.168370 0.804480 8.09670 1 MTRIX1 2 0.795990 0.229060 0.560280 -25.13600 1 MTRIX2 2 0.205720 -0.972900 0.105480 18.24810 1 MTRIX3 2 0.569260 0.031290 -0.821550 72.75840 1 MTRIX1 3 -0.959500 -0.279910 -0.031700 -1.59370 1 MTRIX2 3 -0.281660 0.955190 0.090970 -6.82090 1 MTRIX3 3 0.004810 0.096210 -0.995340 76.82390 1