HEADER HYDROLASE 19-JUL-11 3ZUQ TITLE CRYSTAL STRUCTURE OF AN ENGINEERED BOTULINUM NEUROTOXIN TYPE B - TITLE 2 DERIVATIVE, LC-B-GS-HN-B COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-437, TRANSLOCATION DOMAIN, COMPND 5 RESIDUES 446-858; COMPND 6 SYNONYM: LC-B-GS-HN-B BONT/B, BONTOXILYSIN-B, BOTULINUM NEUROTOXIN B COMPND 7 LIGHT CHAIN, BOTULINUM NEUROTOXIN B HEAVY CHAIN; COMPND 8 EC: 3.4.24.69; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS HYDROLASE, PROTEIN ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR G.MASUYER,P.STANCOMBE,J.A.CHADDOCK,K.R.ACHARYA REVDAT 3 20-DEC-23 3ZUQ 1 REMARK LINK REVDAT 2 28-MAR-12 3ZUQ 1 JRNL REMARK REVDAT 1 07-DEC-11 3ZUQ 0 JRNL AUTH G.MASUYER,P.STANCOMBE,J.A.CHADDOCK,K.R.ACHARYA JRNL TITL STRUCTURES OF ENGINEERED CLOSTRIDIUM BOTULINUM NEUROTOXIN JRNL TITL 2 DERIVATIVES JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1466 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 22139146 JRNL DOI 10.1107/S1744309111034671 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 26534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.000 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.405 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.273 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.855 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7049 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9530 ; 0.844 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 847 ; 4.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 354 ;37.479 ;25.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1287 ;14.708 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1052 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5330 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4239 ; 0.287 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6907 ; 0.533 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2810 ; 0.490 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2623 ; 0.871 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 439 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6421 -27.3678 -12.9309 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: 0.0214 REMARK 3 T33: 0.0549 T12: -0.0006 REMARK 3 T13: 0.0103 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.4337 L22: 0.9656 REMARK 3 L33: 0.6911 L12: -0.1100 REMARK 3 L13: -0.1463 L23: -0.1255 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.0075 S13: -0.0590 REMARK 3 S21: -0.0331 S22: -0.0424 S23: -0.0471 REMARK 3 S31: 0.0481 S32: 0.0105 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 477 A 892 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4270 -2.7697 0.4642 REMARK 3 T TENSOR REMARK 3 T11: 0.0427 T22: 0.0780 REMARK 3 T33: 0.0319 T12: -0.0246 REMARK 3 T13: 0.0001 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.2115 L22: 0.7129 REMARK 3 L33: 0.3160 L12: 0.2128 REMARK 3 L13: -0.1116 L23: -0.3292 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: -0.0403 S13: -0.0192 REMARK 3 S21: 0.0461 S22: -0.0585 S23: -0.0074 REMARK 3 S31: -0.0882 S32: 0.0399 S33: 0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 440-476 MISSING REMARK 4 REMARK 4 3ZUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290049114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 58.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XHL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS ACETATE PH8.0, 0.2M MGCL, REMARK 280 20% PEG8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.68500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.68500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 440 REMARK 465 GLY A 441 REMARK 465 GLY A 442 REMARK 465 GLY A 443 REMARK 465 SER A 444 REMARK 465 GLY A 445 REMARK 465 GLY A 446 REMARK 465 GLY A 447 REMARK 465 GLY A 448 REMARK 465 SER A 449 REMARK 465 GLY A 450 REMARK 465 GLY A 451 REMARK 465 GLY A 452 REMARK 465 GLY A 453 REMARK 465 SER A 454 REMARK 465 ALA A 455 REMARK 465 ILE A 456 REMARK 465 GLU A 457 REMARK 465 GLY A 458 REMARK 465 ARG A 459 REMARK 465 ALA A 460 REMARK 465 GLY A 461 REMARK 465 GLY A 462 REMARK 465 GLY A 463 REMARK 465 GLY A 464 REMARK 465 SER A 465 REMARK 465 GLY A 466 REMARK 465 GLY A 467 REMARK 465 GLY A 468 REMARK 465 GLY A 469 REMARK 465 SER A 470 REMARK 465 GLY A 471 REMARK 465 GLY A 472 REMARK 465 GLY A 473 REMARK 465 GLY A 474 REMARK 465 SER A 475 REMARK 465 ALA A 476 REMARK 465 MET A 646 REMARK 465 ASP A 647 REMARK 465 LYS A 648 REMARK 465 ILE A 649 REMARK 465 ALA A 650 REMARK 465 SER A 893 REMARK 465 LEU A 894 REMARK 465 GLU A 895 REMARK 465 ALA A 896 REMARK 465 LEU A 897 REMARK 465 ALA A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 465 HIS A 901 REMARK 465 HIS A 902 REMARK 465 HIS A 903 REMARK 465 HIS A 904 REMARK 465 HIS A 905 REMARK 465 HIS A 906 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 477 N CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -75.18 -117.79 REMARK 500 ARG A 42 -3.06 74.29 REMARK 500 SER A 62 -152.64 -121.76 REMARK 500 LEU A 79 38.54 72.11 REMARK 500 ASN A 132 44.72 -94.13 REMARK 500 PRO A 145 157.34 -46.69 REMARK 500 GLU A 147 -57.27 -148.04 REMARK 500 ARG A 150 -175.80 175.88 REMARK 500 GLU A 169 79.44 -100.90 REMARK 500 ASN A 179 -2.91 71.33 REMARK 500 ASN A 205 65.10 -116.37 REMARK 500 GLN A 207 79.31 -105.66 REMARK 500 LYS A 210 121.71 75.59 REMARK 500 SER A 213 -76.37 -54.67 REMARK 500 ILE A 214 25.06 45.19 REMARK 500 ARG A 217 19.80 57.75 REMARK 500 ASP A 246 -151.83 -137.10 REMARK 500 LEU A 307 -34.33 -137.58 REMARK 500 ASP A 333 -155.62 -91.41 REMARK 500 ASN A 417 55.90 -90.22 REMARK 500 ASN A 496 1.56 -69.60 REMARK 500 ASN A 519 42.61 -78.29 REMARK 500 THR A 571 -149.08 -112.83 REMARK 500 ASP A 587 73.59 -102.86 REMARK 500 SER A 653 -158.69 54.86 REMARK 500 MET A 822 -60.51 -132.42 REMARK 500 LEU A 852 -63.02 -101.13 REMARK 500 ILE A 853 -61.68 59.44 REMARK 500 SER A 855 41.41 -149.28 REMARK 500 THR A 882 -43.30 60.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1440 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 230 NE2 REMARK 620 2 HIS A 234 NE2 106.2 REMARK 620 3 GLU A 268 OE1 140.2 83.1 REMARK 620 4 GLU A 268 OE2 88.6 116.1 53.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1440 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S0D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 5.5 REMARK 900 RELATED ID: 1EPW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM NEUROTOXIN TYPE B REMARK 900 RELATED ID: 1G9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 1) REMARK 900 RELATED ID: 1F82 RELATED DB: PDB REMARK 900 BOTULINUM NEUROTOXIN TYPE B CATALYTIC DOMAIN REMARK 900 RELATED ID: 2ETF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL LENGTH BOTULINUM NEUROTOXIN ( TYPEB) REMARK 900 LIGHT CHAIN REMARK 900 RELATED ID: 1I1E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH DOXORUBICIN REMARK 900 RELATED ID: 1S0F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 7.0 REMARK 900 RELATED ID: 2XHL RELATED DB: PDB REMARK 900 STRUCTURE OF A FUNCTIONAL DERIVATIVE OF CLOSTRIDIUM BOTULINUM REMARK 900 NEUROTOXIN B REMARK 900 RELATED ID: 1G9A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 3) REMARK 900 RELATED ID: 1G9C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 4) REMARK 900 RELATED ID: 1S0B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 4.0 REMARK 900 RELATED ID: 1S0G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B APO FORM REMARK 900 RELATED ID: 1G9D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 2) REMARK 900 RELATED ID: 1S0C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 5.0 REMARK 900 RELATED ID: 1F31 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED REMARK 900 WITH A TRISACCHARIDE REMARK 900 RELATED ID: 1S0E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 6.0 REMARK 900 RELATED ID: 1Z0H RELATED DB: PDB REMARK 900 N-TERMINAL HELIX REORIENTS IN RECOMBINANT C-FRAGMENT OFCLOSTRIDIUM REMARK 900 BOTULINUM TYPE B REMARK 900 RELATED ID: 3ZUR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENGINEERED BOTULINUM NEUROTOXIN TYPE A- REMARK 900 SNARE23 DERIVATIVE, LC0-A-SNAP25-HN-A REMARK 900 RELATED ID: 3ZUS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENGINEERED BOTULINUM NEUROTOXIN TYPE A- REMARK 900 SNARE23 DERIVATIVE, LC-A-SNAP23-HN-A REMARK 999 REMARK 999 SEQUENCE REMARK 999 REPEATS GGGGS LINKERS ENGINEERED BETWEEN LC AND HN OF REMARK 999 BOTULINUM NEUROTOXIN B DBREF 3ZUQ A 1 437 UNP P10844 BXB_CLOBO 1 437 DBREF 3ZUQ A 438 480 PDB 3ZUQ 3ZUQ 438 480 DBREF 3ZUQ A 481 893 UNP P10844 BXB_CLOBO 446 858 SEQADV 3ZUQ LEU A 894 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ GLU A 895 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ ALA A 896 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ LEU A 897 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ ALA A 898 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ SER A 899 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ GLY A 900 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ HIS A 901 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ HIS A 902 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ HIS A 903 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ HIS A 904 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ HIS A 905 UNP P10844 EXPRESSION TAG SEQADV 3ZUQ HIS A 906 UNP P10844 EXPRESSION TAG SEQRES 1 A 906 MET PRO VAL THR ILE ASN ASN PHE ASN TYR ASN ASP PRO SEQRES 2 A 906 ILE ASP ASN ASN ASN ILE ILE MET MET GLU PRO PRO PHE SEQRES 3 A 906 ALA ARG GLY THR GLY ARG TYR TYR LYS ALA PHE LYS ILE SEQRES 4 A 906 THR ASP ARG ILE TRP ILE ILE PRO GLU ARG TYR THR PHE SEQRES 5 A 906 GLY TYR LYS PRO GLU ASP PHE ASN LYS SER SER GLY ILE SEQRES 6 A 906 PHE ASN ARG ASP VAL CYS GLU TYR TYR ASP PRO ASP TYR SEQRES 7 A 906 LEU ASN THR ASN ASP LYS LYS ASN ILE PHE LEU GLN THR SEQRES 8 A 906 MET ILE LYS LEU PHE ASN ARG ILE LYS SER LYS PRO LEU SEQRES 9 A 906 GLY GLU LYS LEU LEU GLU MET ILE ILE ASN GLY ILE PRO SEQRES 10 A 906 TYR LEU GLY ASP ARG ARG VAL PRO LEU GLU GLU PHE ASN SEQRES 11 A 906 THR ASN ILE ALA SER VAL THR VAL ASN LYS LEU ILE SER SEQRES 12 A 906 ASN PRO GLY GLU VAL GLU ARG LYS LYS GLY ILE PHE ALA SEQRES 13 A 906 ASN LEU ILE ILE PHE GLY PRO GLY PRO VAL LEU ASN GLU SEQRES 14 A 906 ASN GLU THR ILE ASP ILE GLY ILE GLN ASN HIS PHE ALA SEQRES 15 A 906 SER ARG GLU GLY PHE GLY GLY ILE MET GLN MET LYS PHE SEQRES 16 A 906 CYS PRO GLU TYR VAL SER VAL PHE ASN ASN VAL GLN GLU SEQRES 17 A 906 ASN LYS GLY ALA SER ILE PHE ASN ARG ARG GLY TYR PHE SEQRES 18 A 906 SER ASP PRO ALA LEU ILE LEU MET HIS GLU LEU ILE HIS SEQRES 19 A 906 VAL LEU HIS GLY LEU TYR GLY ILE LYS VAL ASP ASP LEU SEQRES 20 A 906 PRO ILE VAL PRO ASN GLU LYS LYS PHE PHE MET GLN SER SEQRES 21 A 906 THR ASP ALA ILE GLN ALA GLU GLU LEU TYR THR PHE GLY SEQRES 22 A 906 GLY GLN ASP PRO SER ILE ILE THR PRO SER THR ASP LYS SEQRES 23 A 906 SER ILE TYR ASP LYS VAL LEU GLN ASN PHE ARG GLY ILE SEQRES 24 A 906 VAL ASP ARG LEU ASN LYS VAL LEU VAL CYS ILE SER ASP SEQRES 25 A 906 PRO ASN ILE ASN ILE ASN ILE TYR LYS ASN LYS PHE LYS SEQRES 26 A 906 ASP LYS TYR LYS PHE VAL GLU ASP SER GLU GLY LYS TYR SEQRES 27 A 906 SER ILE ASP VAL GLU SER PHE ASP LYS LEU TYR LYS SER SEQRES 28 A 906 LEU MET PHE GLY PHE THR GLU THR ASN ILE ALA GLU ASN SEQRES 29 A 906 TYR LYS ILE LYS THR ARG ALA SER TYR PHE SER ASP SER SEQRES 30 A 906 LEU PRO PRO VAL LYS ILE LYS ASN LEU LEU ASP ASN GLU SEQRES 31 A 906 ILE TYR THR ILE GLU GLU GLY PHE ASN ILE SER ASP LYS SEQRES 32 A 906 ASP MET GLU LYS GLU TYR ARG GLY GLN ASN LYS ALA ILE SEQRES 33 A 906 ASN LYS GLN ALA TYR GLU GLU ILE SER LYS GLU HIS LEU SEQRES 34 A 906 ALA VAL TYR LYS ILE GLN MET CYS VAL ASP GLY GLY GLY SEQRES 35 A 906 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER ALA SEQRES 36 A 906 ILE GLU GLY ARG ALA GLY GLY GLY GLY SER GLY GLY GLY SEQRES 37 A 906 GLY SER GLY GLY GLY GLY SER ALA LEU VAL LEU GLN CYS SEQRES 38 A 906 ILE ASP VAL ASP ASN GLU ASP LEU PHE PHE ILE ALA ASP SEQRES 39 A 906 LYS ASN SER PHE SER ASP ASP LEU SER LYS ASN GLU ARG SEQRES 40 A 906 ILE GLU TYR ASN THR GLN SER ASN TYR ILE GLU ASN ASP SEQRES 41 A 906 PHE PRO ILE ASN GLU LEU ILE LEU ASP THR ASP LEU ILE SEQRES 42 A 906 SER LYS ILE GLU LEU PRO SER GLU ASN THR GLU SER LEU SEQRES 43 A 906 THR ASP PHE ASN VAL ASP VAL PRO VAL TYR GLU LYS GLN SEQRES 44 A 906 PRO ALA ILE LYS LYS ILE PHE THR ASP GLU ASN THR ILE SEQRES 45 A 906 PHE GLN TYR LEU TYR SER GLN THR PHE PRO LEU ASP ILE SEQRES 46 A 906 ARG ASP ILE SER LEU THR SER SER PHE ASP ASP ALA LEU SEQRES 47 A 906 LEU PHE SER ASN LYS VAL TYR SER PHE PHE SER MET ASP SEQRES 48 A 906 TYR ILE LYS THR ALA ASN LYS VAL VAL GLU ALA GLY LEU SEQRES 49 A 906 PHE ALA GLY TRP VAL LYS GLN ILE VAL ASN ASP PHE VAL SEQRES 50 A 906 ILE GLU ALA ASN LYS SER ASN THR MET ASP LYS ILE ALA SEQRES 51 A 906 ASP ILE SER LEU ILE VAL PRO TYR ILE GLY LEU ALA LEU SEQRES 52 A 906 ASN VAL GLY ASN GLU THR ALA LYS GLY ASN PHE GLU ASN SEQRES 53 A 906 ALA PHE GLU ILE ALA GLY ALA SER ILE LEU LEU GLU PHE SEQRES 54 A 906 ILE PRO GLU LEU LEU ILE PRO VAL VAL GLY ALA PHE LEU SEQRES 55 A 906 LEU GLU SER TYR ILE ASP ASN LYS ASN LYS ILE ILE LYS SEQRES 56 A 906 THR ILE ASP ASN ALA LEU THR LYS ARG ASN GLU LYS TRP SEQRES 57 A 906 SER ASP MET TYR GLY LEU ILE VAL ALA GLN TRP LEU SER SEQRES 58 A 906 THR VAL ASN THR GLN PHE TYR THR ILE LYS GLU GLY MET SEQRES 59 A 906 TYR LYS ALA LEU ASN TYR GLN ALA GLN ALA LEU GLU GLU SEQRES 60 A 906 ILE ILE LYS TYR ARG TYR ASN ILE TYR SER GLU LYS GLU SEQRES 61 A 906 LYS SER ASN ILE ASN ILE ASP PHE ASN ASP ILE ASN SER SEQRES 62 A 906 LYS LEU ASN GLU GLY ILE ASN GLN ALA ILE ASP ASN ILE SEQRES 63 A 906 ASN ASN PHE ILE ASN GLY CYS SER VAL SER TYR LEU MET SEQRES 64 A 906 LYS LYS MET ILE PRO LEU ALA VAL GLU LYS LEU LEU ASP SEQRES 65 A 906 PHE ASP ASN THR LEU LYS LYS ASN LEU LEU ASN TYR ILE SEQRES 66 A 906 ASP GLU ASN LYS LEU TYR LEU ILE GLY SER ALA GLU TYR SEQRES 67 A 906 GLU LYS SER LYS VAL ASN LYS TYR LEU LYS THR ILE MET SEQRES 68 A 906 PRO PHE ASP LEU SER ILE TYR THR ASN ASP THR ILE LEU SEQRES 69 A 906 ILE GLU MET PHE ASN LYS TYR ASN SER LEU GLU ALA LEU SEQRES 70 A 906 ALA SER GLY HIS HIS HIS HIS HIS HIS HET ZN A1440 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *44(H2 O) HELIX 1 1 PRO A 24 ARG A 28 5 5 HELIX 2 2 LYS A 55 ASN A 60 5 6 HELIX 3 3 THR A 81 LYS A 100 1 20 HELIX 4 4 LYS A 102 GLY A 115 1 14 HELIX 5 5 SER A 183 GLU A 185 5 3 HELIX 6 6 ASP A 223 TYR A 240 1 18 HELIX 7 7 GLN A 265 GLY A 273 1 9 HELIX 8 8 GLN A 275 ILE A 280 5 6 HELIX 9 9 THR A 281 VAL A 306 1 26 HELIX 10 10 ASN A 316 LYS A 329 1 14 HELIX 11 11 ASP A 341 PHE A 354 1 14 HELIX 12 12 THR A 357 LYS A 366 1 10 HELIX 13 13 ILE A 400 ASP A 404 5 5 HELIX 14 14 GLU A 406 ARG A 410 5 5 HELIX 15 15 ASN A 417 GLN A 419 5 3 HELIX 16 16 GLU A 487 LEU A 489 5 3 HELIX 17 17 ASP A 494 PHE A 498 5 5 HELIX 18 18 ASP A 500 LYS A 504 5 5 HELIX 19 19 PRO A 522 ASP A 529 1 8 HELIX 20 20 THR A 571 SER A 578 1 8 HELIX 21 21 SER A 593 PHE A 600 1 8 HELIX 22 22 SER A 609 ASN A 617 1 9 HELIX 23 23 GLU A 621 GLY A 623 5 3 HELIX 24 24 LEU A 624 ASN A 641 1 18 HELIX 25 25 TYR A 658 ASN A 664 1 7 HELIX 26 26 ASN A 673 GLY A 682 1 10 HELIX 27 27 ALA A 683 LEU A 687 5 5 HELIX 28 28 ASN A 709 VAL A 743 1 35 HELIX 29 29 VAL A 743 TYR A 776 1 34 HELIX 30 30 SER A 777 ILE A 784 1 8 HELIX 31 31 ASP A 787 MET A 822 1 36 HELIX 32 32 MET A 822 GLU A 847 1 26 HELIX 33 33 ASN A 848 ILE A 853 1 6 HELIX 34 34 SER A 855 LEU A 867 1 13 HELIX 35 35 ASP A 874 TYR A 878 5 5 HELIX 36 36 THR A 882 TYR A 891 1 10 SHEET 1 AA 9 GLU A 171 ILE A 173 0 SHEET 2 AA 9 MET A 191 LYS A 194 -1 O GLN A 192 N ILE A 173 SHEET 3 AA 9 LEU A 158 PHE A 161 1 O ILE A 159 N MET A 193 SHEET 4 AA 9 ILE A 43 ILE A 46 1 O TRP A 44 N ILE A 160 SHEET 5 AA 9 TYR A 34 THR A 40 -1 O PHE A 37 N ILE A 45 SHEET 6 AA 9 ILE A 19 GLU A 23 -1 O ILE A 20 N ALA A 36 SHEET 7 AA 9 THR A 137 LEU A 141 -1 O ASN A 139 N GLU A 23 SHEET 8 AA 9 LYS A 151 PHE A 155 -1 O LYS A 152 N LYS A 140 SHEET 9 AA 9 ASN A 542 THR A 543 -1 O THR A 543 N GLY A 153 SHEET 1 AB 2 GLY A 64 ILE A 65 0 SHEET 2 AB 2 GLN A 559 PRO A 560 -1 O GLN A 559 N ILE A 65 SHEET 1 AC 2 GLU A 72 TYR A 73 0 SHEET 2 AC 2 LEU A 429 ALA A 430 -1 O ALA A 430 N GLU A 72 SHEET 1 AD 2 GLU A 128 PHE A 129 0 SHEET 2 AD 2 VAL A 308 CYS A 309 1 O VAL A 308 N PHE A 129 SHEET 1 AE 2 GLY A 176 ILE A 177 0 SHEET 2 AE 2 HIS A 180 PHE A 181 -1 O HIS A 180 N ILE A 177 SHEET 1 AF 4 TYR A 220 PHE A 221 0 SHEET 2 AF 4 TYR A 199 PHE A 203 -1 O PHE A 203 N TYR A 220 SHEET 3 AF 4 LEU A 378 ILE A 383 -1 O LEU A 378 N VAL A 202 SHEET 4 AF 4 TYR A 421 GLU A 422 -1 O GLU A 422 N LYS A 382 SHEET 1 AG 2 VAL A 331 GLU A 332 0 SHEET 2 AG 2 TYR A 338 SER A 339 -1 O SER A 339 N VAL A 331 SHEET 1 AH 3 GLN A 480 ASP A 485 0 SHEET 2 AH 3 LYS A 433 VAL A 438 -1 O ILE A 434 N VAL A 484 SHEET 3 AH 3 ILE A 562 THR A 567 1 O LYS A 563 N GLN A 435 SHEET 1 AI 2 GLU A 506 ILE A 508 0 SHEET 2 AI 2 PHE A 701 LEU A 703 1 O LEU A 702 N ILE A 508 SHEET 1 AJ 2 SER A 589 THR A 591 0 SHEET 2 AJ 2 LYS A 603 TYR A 605 1 O VAL A 604 N THR A 591 LINK NE2 HIS A 230 ZN ZN A1440 1555 1555 2.16 LINK NE2 HIS A 234 ZN ZN A1440 1555 1555 2.09 LINK OE1 GLU A 268 ZN ZN A1440 1555 1555 2.59 LINK OE2 GLU A 268 ZN ZN A1440 1555 1555 2.21 SITE 1 AC1 3 HIS A 230 HIS A 234 GLU A 268 CRYST1 89.370 103.790 114.950 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008699 0.00000