HEADER SUGAR BINDING PROTEIN 28-JUL-11 3ZW2 TITLE STRUCTURE OF THE LECTIN BAMBL FROM BURKHOLDERIA AMBIFARIA IN COMPLEX TITLE 2 WITH BLOOD GROUP H TYPE 1 TETRASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAMBL LECTIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA; SOURCE 3 ORGANISM_TAXID: 339670; SOURCE 4 STRAIN: AMMD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET25 KEYWDS SUGAR BINDING PROTEIN, CYSTIC FIBROSIS, B-PROPELLER, HUMAN HISTO- KEYWDS 2 BLOOD GROUP EXPDTA X-RAY DIFFRACTION AUTHOR A.AUDFRAY,J.CLAUDINON,S.ABOUNIT,N.RUVOEN-CLOUET,G.LARSON,M.WIMMEROVA, AUTHOR 2 J.LEPENDU,W.ROMER,A.VARROT,A.IMBERTY REVDAT 5 20-DEC-23 3ZW2 1 HETSYN REVDAT 4 29-JUL-20 3ZW2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 15-FEB-12 3ZW2 1 JRNL REVDAT 2 21-DEC-11 3ZW2 1 JRNL REMARK MASTER REVDAT 1 16-NOV-11 3ZW2 0 JRNL AUTH A.AUDFRAY,J.CLAUDINON,S.ABOUNIT,N.RUVOEN-CLOUET,G.LARSON, JRNL AUTH 2 D.F.SMITH,M.WIMMEROVA,J.LE PENDU,W.ROMER,A.VARROT,A.IMBERTY JRNL TITL FUCOSE-BINDING LECTIN FROM OPPORTUNISTIC PATHOGEN JRNL TITL 2 BURKHOLDERIA AMBIFARIA BINDS TO BOTH PLANT AND HUMAN JRNL TITL 3 OLIGOSACCHARIDIC EPITOPES. JRNL REF J.BIOL.CHEM. V. 287 4335 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22170069 JRNL DOI 10.1074/JBC.M111.314831 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 27618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1569 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 213 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2306 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1417 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3190 ; 1.681 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3379 ; 1.223 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.252 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;11.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 7.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2470 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 489 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 297 ; 0.176 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1349 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1090 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1187 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 205 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1302 ; 0.904 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 562 ; 0.265 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2074 ; 1.532 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1004 ; 2.047 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1115 ; 2.875 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9127 33.0549 63.6342 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0698 REMARK 3 T33: 0.0195 T12: -0.0024 REMARK 3 T13: -0.0047 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.8277 L22: 2.2849 REMARK 3 L33: 1.8689 L12: 0.3302 REMARK 3 L13: -0.2564 L23: 0.3554 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.0954 S13: 0.0154 REMARK 3 S21: 0.1034 S22: -0.0200 S23: 0.0222 REMARK 3 S31: -0.0327 S32: -0.0109 S33: -0.0086 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1197 46.1243 50.0825 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0067 REMARK 3 T33: 0.0415 T12: -0.0013 REMARK 3 T13: 0.0061 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9235 L22: 1.8514 REMARK 3 L33: 2.8117 L12: 0.1852 REMARK 3 L13: -0.2038 L23: 0.2581 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.0414 S13: 0.0665 REMARK 3 S21: -0.0450 S22: -0.0100 S23: -0.0051 REMARK 3 S31: -0.1878 S32: 0.0150 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 87 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6227 27.0749 45.2715 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0177 REMARK 3 T33: 0.0214 T12: 0.0012 REMARK 3 T13: -0.0091 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.8442 L22: 1.7372 REMARK 3 L33: 1.8165 L12: -0.0975 REMARK 3 L13: -0.4237 L23: -0.2105 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0027 S13: -0.0053 REMARK 3 S21: -0.1164 S22: 0.0147 S23: -0.0131 REMARK 3 S31: 0.0203 S32: -0.0201 S33: -0.0207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 3ZW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.13990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29207 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZW0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M MALONATE PH 6.0. 10% ETHYLENE REMARK 280 GLYCOL WAS ADDED AS CRYOPROTECTANT PRIOR FREEZING REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.78500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 -146.28 -136.85 REMARK 500 SER B 32 -90.53 -131.53 REMARK 500 ASP B 77 47.00 -141.13 REMARK 500 SER C 32 -99.39 -127.18 REMARK 500 SER C 32 -104.21 -127.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2038 DISTANCE = 6.17 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZW1 RELATED DB: PDB REMARK 900 STRUCTURE OF BAML LECTINE IN COMPLEX WITH LEWIX X ANTIGEN REMARK 900 RELATED ID: 3ZW0 RELATED DB: PDB REMARK 900 STRUCTURE OF BAMBL LECTIN FROM BURKHOLDERIA AMBIFARIA REMARK 900 RELATED ID: 3ZWE RELATED DB: PDB REMARK 900 STRUCTURE OF BAMBL, A LECTIN FROM BURKHOLDERIA AMBIFARIA, COMPLEXED REMARK 900 WITH BLOOD GROUP B EPITOPE REMARK 900 RELATED ID: 3ZZV RELATED DB: PDB REMARK 900 BAMBL COMPLEXED WITH HTYPE2 TETRASACCHARIDE DBREF 3ZW2 A 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 DBREF 3ZW2 B 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 DBREF 3ZW2 C 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 SEQRES 1 A 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 A 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 A 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 A 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 A 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 A 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 A 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 B 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 B 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 B 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 B 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 B 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 B 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 B 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 C 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 C 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 C 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 C 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 C 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 C 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 C 87 TRP THR ARG GLY ALA TYR THR GLY LEU HET NAG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET GAL E 1 12 HET FUC E 2 10 HET NAG F 1 15 HET GAL F 2 11 HET FUC F 3 10 HET NAG G 1 15 HET GAL G 2 11 HET FUC G 3 10 HET GLA H 1 12 HET NAG H 2 14 HET GAL H 3 14 HET FUC H 4 10 HET NAG I 1 15 HET GAL I 2 11 HET FUC I 3 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 4 GAL 6(C6 H12 O6) FORMUL 4 FUC 6(C6 H12 O5) FORMUL 8 GLA C6 H12 O6 FORMUL 10 HOH *260(H2 O) SHEET 1 AA 4 GLN A 2 TRP A 8 0 SHEET 2 AA 4 SER A 13 ASN A 20 -1 O SER A 13 N TRP A 8 SHEET 3 AA 4 LYS A 23 TYR A 29 -1 O LYS A 23 N ASN A 20 SHEET 4 AA 4 TYR A 35 ALA A 42 -1 O TYR A 35 N CYS A 28 SHEET 1 AB 4 ASN A 45 SER A 53 0 SHEET 2 AB 4 ALA A 56 SER A 65 -1 O ALA A 56 N SER A 53 SHEET 3 AB 4 SER A 68 TRP A 74 -1 O SER A 68 N SER A 65 SHEET 4 AB 4 TRP A 79 ARG A 81 -1 O THR A 80 N CYS A 73 SHEET 1 BA 4 GLN B 2 TRP B 8 0 SHEET 2 BA 4 SER B 13 ASN B 20 -1 O SER B 13 N TRP B 8 SHEET 3 BA 4 LYS B 23 TYR B 29 -1 O LYS B 23 N ASN B 20 SHEET 4 BA 4 TYR B 35 ALA B 42 -1 O TYR B 35 N CYS B 28 SHEET 1 BB 4 ASN B 45 LEU B 52 0 SHEET 2 BB 4 VAL B 57 SER B 65 -1 O HIS B 58 N TRP B 51 SHEET 3 BB 4 SER B 68 TRP B 74 -1 O SER B 68 N SER B 65 SHEET 4 BB 4 TRP B 79 ARG B 81 -1 O THR B 80 N CYS B 73 SHEET 1 CA 4 GLN C 2 TRP C 8 0 SHEET 2 CA 4 SER C 13 ASN C 20 -1 O SER C 13 N TRP C 8 SHEET 3 CA 4 LYS C 23 TYR C 29 -1 O LYS C 23 N ASN C 20 SHEET 4 CA 4 TYR C 35 ALA C 42 -1 O TYR C 35 N CYS C 28 SHEET 1 CB 4 ASN C 45 SER C 53 0 SHEET 2 CB 4 ALA C 56 SER C 65 -1 O ALA C 56 N SER C 53 SHEET 3 CB 4 SER C 68 TRP C 74 -1 O SER C 68 N SER C 65 SHEET 4 CB 4 TRP C 79 ARG C 81 -1 O THR C 80 N CYS C 73 LINK O3 NAG D 1 C1 GAL D 2 1555 1555 1.42 LINK O2 GAL D 2 C1 FUC D 3 1555 1555 1.44 LINK O2 GAL E 1 C1 FUC E 2 1555 1555 1.45 LINK O3 NAG F 1 C1 GAL F 2 1555 1555 1.41 LINK O2 GAL F 2 C1 FUC F 3 1555 1555 1.44 LINK O3 NAG G 1 C1 GAL G 2 1555 1555 1.41 LINK O2 GAL G 2 C1 FUC G 3 1555 1555 1.43 LINK O3 GLA H 1 C1 NAG H 2 1555 1555 1.41 LINK O3 NAG H 2 C1 GAL H 3 1555 1555 1.40 LINK O2 GAL H 3 C1 FUC H 4 1555 1555 1.45 LINK O3 NAG I 1 C1 GAL I 2 1555 1555 1.46 LINK O2 GAL I 2 C1 FUC I 3 1555 1555 1.41 CISPEP 1 THR A 11 PRO A 12 0 -5.95 CISPEP 2 THR B 11 PRO B 12 0 -9.56 CISPEP 3 THR C 11 PRO C 12 0 -3.31 CRYST1 34.640 47.570 72.940 90.00 103.19 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028868 0.000000 0.006766 0.00000 SCALE2 0.000000 0.021022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014081 0.00000 MTRIX1 1 0.872310 -0.056930 0.485630 -25.50875 1 MTRIX2 1 -0.455230 -0.457020 0.764130 5.21028 1 MTRIX3 1 0.178440 -0.887630 -0.424580 109.54422 1 MTRIX1 2 0.873410 -0.453960 0.176270 5.02234 1 MTRIX2 2 -0.061940 -0.462580 -0.884410 97.94873 1 MTRIX3 2 0.483030 0.761540 -0.432140 55.39693 1