HEADER HYDROLASE 07-AUG-11 3ZX4 TITLE THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, IN TITLE 2 COMPLEX WITH THE ALPHA-MANNOSYLGLYCERATE,ORTHOPHOSPHATE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PKK223-3 KEYWDS HYDROLASE, HALOALKANOID ACID DEHALOGENASE-LIKE PHOSPHATASE, HAD-LIKE KEYWDS 2 PHOSPHATASE, CRYSTALLOGRAPHIC SNAPSHOT EXPDTA X-RAY DIFFRACTION AUTHOR S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS REVDAT 4 20-DEC-23 3ZX4 1 HETSYN REVDAT 3 29-JUL-20 3ZX4 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 09-NOV-11 3ZX4 1 JRNL REVDAT 1 19-OCT-11 3ZX4 0 JRNL AUTH S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF JRNL TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB27: A NEW MEMBER OF THE HALOALKANOIC ACID JRNL TITL 4 DEHALOGENASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 50 9551 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21961705 JRNL DOI 10.1021/BI201171H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GONCALVES,A.M.ESTEVES,N.BORGES,H.SANTOS,P.M.MATIAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB27. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 390 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21393850 REMARK 1 DOI 10.1107/S1744309111002843 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 50834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5428 - 3.7476 1.00 5085 267 0.1594 0.2095 REMARK 3 2 3.7476 - 2.9749 0.98 4887 259 0.1698 0.2113 REMARK 3 3 2.9749 - 2.5990 0.97 4824 253 0.1799 0.2250 REMARK 3 4 2.5990 - 2.3614 0.97 4784 262 0.1657 0.2064 REMARK 3 5 2.3614 - 2.1921 0.97 4863 232 0.1656 0.2136 REMARK 3 6 2.1921 - 2.0629 0.97 4811 281 0.1689 0.2156 REMARK 3 7 2.0629 - 1.9596 0.97 4818 269 0.1757 0.2301 REMARK 3 8 1.9596 - 1.8743 0.97 4787 259 0.1898 0.2428 REMARK 3 9 1.8743 - 1.8021 0.97 4814 257 0.1971 0.2294 REMARK 3 10 1.8021 - 1.7400 0.92 4569 253 0.2253 0.3060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 59.29 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.26980 REMARK 3 B22 (A**2) : 2.83060 REMARK 3 B33 (A**2) : -6.10040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.34350 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4143 REMARK 3 ANGLE : 1.020 5646 REMARK 3 CHIRALITY : 0.066 614 REMARK 3 PLANARITY : 0.005 749 REMARK 3 DIHEDRAL : 13.414 1618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:30) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6218 50.0200 -15.6096 REMARK 3 T TENSOR REMARK 3 T11: 0.9062 T22: 0.4119 REMARK 3 T33: 0.7778 T12: 0.1477 REMARK 3 T13: -0.2539 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 0.7757 L22: 0.2041 REMARK 3 L33: 0.6594 L12: -0.1020 REMARK 3 L13: 0.1676 L23: 0.1681 REMARK 3 S TENSOR REMARK 3 S11: 0.5861 S12: -0.3545 S13: -1.5894 REMARK 3 S21: -0.6113 S22: -0.0335 S23: 0.2566 REMARK 3 S31: 2.0811 S32: 0.4104 S33: 0.0152 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 31:134) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8015 62.0562 0.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.0650 T22: 0.1478 REMARK 3 T33: 0.2237 T12: -0.0058 REMARK 3 T13: -0.0001 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 1.3655 L22: 1.4029 REMARK 3 L33: 3.4933 L12: 0.4243 REMARK 3 L13: -0.8723 L23: -0.8638 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.1939 S13: 0.0069 REMARK 3 S21: 0.0657 S22: -0.1335 S23: -0.1324 REMARK 3 S31: 0.0369 S32: 0.1815 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 135:175) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1790 63.2781 2.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.3571 REMARK 3 T33: 0.3025 T12: -0.0418 REMARK 3 T13: -0.0097 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 1.0691 L22: 1.3104 REMARK 3 L33: 2.3244 L12: -0.5510 REMARK 3 L13: 0.8056 L23: -0.4257 REMARK 3 S TENSOR REMARK 3 S11: 0.1997 S12: -0.0520 S13: -0.1360 REMARK 3 S21: -0.2726 S22: -0.0263 S23: 0.4105 REMARK 3 S31: 0.2441 S32: -0.7776 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 176:250) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4615 59.2002 -20.2886 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.2556 REMARK 3 T33: 0.4209 T12: -0.0648 REMARK 3 T13: -0.1723 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 2.7488 L22: 2.6170 REMARK 3 L33: 2.9296 L12: -1.1847 REMARK 3 L13: 1.5661 L23: -0.8137 REMARK 3 S TENSOR REMARK 3 S11: 0.4077 S12: 0.3960 S13: -0.6901 REMARK 3 S21: -0.5264 S22: 0.1924 S23: 0.5815 REMARK 3 S31: 0.7579 S32: -0.1501 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:87) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2447 50.7400 43.6378 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.2350 REMARK 3 T33: 0.1452 T12: -0.0304 REMARK 3 T13: -0.0497 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.9093 L22: 1.8913 REMARK 3 L33: 2.6555 L12: 1.1345 REMARK 3 L13: 0.1122 L23: -0.6474 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.2122 S13: 0.1408 REMARK 3 S21: 0.4921 S22: -0.1233 S23: -0.2280 REMARK 3 S31: -0.2780 S32: 0.3460 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 88:175) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5963 49.4414 21.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.1107 T22: 0.1465 REMARK 3 T33: 0.1456 T12: -0.0100 REMARK 3 T13: -0.0088 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.4886 L22: 2.9563 REMARK 3 L33: 3.3944 L12: 1.0594 REMARK 3 L13: -0.7340 L23: -0.2542 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: 0.2028 S13: 0.0701 REMARK 3 S21: 0.0320 S22: 0.0419 S23: 0.1561 REMARK 3 S31: -0.1478 S32: 0.1150 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 176:249) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3689 50.2975 44.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.4216 T22: 0.2637 REMARK 3 T33: 0.1777 T12: -0.0096 REMARK 3 T13: 0.0346 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.7892 L22: 1.9970 REMARK 3 L33: 1.7696 L12: 0.3616 REMARK 3 L13: -0.1978 L23: 0.0544 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: -0.1943 S13: 0.1497 REMARK 3 S21: 0.2286 S22: 0.0114 S23: 0.3594 REMARK 3 S31: -0.1116 S32: -0.4079 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 250:254) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1250 51.0243 62.3831 REMARK 3 T TENSOR REMARK 3 T11: 1.0232 T22: 1.1223 REMARK 3 T33: 0.4651 T12: -0.2581 REMARK 3 T13: 0.0610 T23: -0.0799 REMARK 3 L TENSOR REMARK 3 L11: 0.0542 L22: 0.0385 REMARK 3 L33: 0.0016 L12: 0.0457 REMARK 3 L13: 0.0093 L23: 0.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.3281 S13: -0.7368 REMARK 3 S21: 0.8023 S22: 0.0410 S23: -0.1169 REMARK 3 S31: 0.4011 S32: -0.2025 S33: 0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25200 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50839 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZTY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REMARK 1 REFERENCE ABOVE, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.37000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 252 REMARK 465 ARG A 253 REMARK 465 ARG A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 PRO B 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 251 CA C O CB CG CD1 CD2 REMARK 470 GLY B 255 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -81.05 -89.28 REMARK 500 THR A 10 -80.48 -109.32 REMARK 500 ASP A 13 -162.00 -114.60 REMARK 500 PRO A 20 33.45 -72.86 REMARK 500 TYR A 137 -52.17 -134.10 REMARK 500 ARG A 167 -32.96 -131.01 REMARK 500 ASN A 205 8.05 -67.89 REMARK 500 LEU A 247 -63.85 -100.90 REMARK 500 LEU B 7 -71.35 -101.71 REMARK 500 THR B 10 -77.70 -122.13 REMARK 500 TYR B 137 -49.99 -134.75 REMARK 500 ASP B 202 -2.49 -140.74 REMARK 500 SER B 252 -79.39 -103.01 REMARK 500 ARG B 253 147.99 60.62 REMARK 500 ARG B 254 -24.87 70.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2040 DISTANCE = 7.05 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 2-O-ALPHA-MANNOSYL-D-GLYCERATE (2M8) REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD2 REMARK 620 2 ASP A 8 O 81.8 REMARK 620 3 ASP A 202 OD1 57.2 62.5 REMARK 620 4 PO4 A 261 O3 109.8 95.2 154.3 REMARK 620 5 HOH A2005 O 71.3 146.5 85.8 112.2 REMARK 620 6 HOH A2172 O 125.3 111.9 81.9 120.5 71.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD2 REMARK 620 2 ASP B 8 O 85.4 REMARK 620 3 ASP B 202 OD1 83.0 86.0 REMARK 620 4 PO4 B 261 O2 92.3 100.5 171.6 REMARK 620 5 HOH B2007 O 91.3 168.0 82.1 91.1 REMARK 620 6 HOH B2010 O 169.2 88.8 87.5 97.8 92.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZWK RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE METAVANADATE REMARK 900 RELATED ID: 3ZUP RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZTY RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF THE GADOLINIUM DERIVATIVE OF MPGP, REMARK 900 THE MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 900 THERMOPHILUS HB27 REMARK 900 RELATED ID: 3ZTW RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF APO-MPGP, THE MANNOSYL -3- REMARK 900 PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS HB27 IN ITS REMARK 900 APO-FORM REMARK 900 RELATED ID: 3ZU6 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZW7 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND METAPHOSPHATE. REMARK 900 RELATED ID: 3ZWD RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE. REMARK 900 RELATED ID: 3ZX5 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 COVALENTLY BOUND TO VANADATE AND IN COMPLEX WITH ALPHA- REMARK 900 MANNOSYLGLYCERATE AND MAGNESIUM DBREF 3ZX4 A 1 259 UNP Q72K29 Q72K29_THET2 1 259 DBREF 3ZX4 B 1 259 UNP Q72K29 Q72K29_THET2 1 259 SEQRES 1 A 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 A 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 A 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 A 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 A 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 A 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 A 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 A 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 A 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 A 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 A 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 A 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 A 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 A 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 A 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 A 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 A 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 A 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 A 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 A 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO SEQRES 1 B 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 B 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 B 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 B 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 B 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 B 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 B 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 B 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 B 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 B 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 B 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 B 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 B 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 B 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 B 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 B 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 B 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 B 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 B 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 B 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO HET MG A 260 1 HET PO4 A 261 5 HET 2M8 A 262 18 HET MG B 260 1 HET PO4 B 261 5 HET 2M8 B 262 18 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM 2M8 (2R)-3-HYDROXY-2-(ALPHA-D-MANNOPYRANOSYLOXY)PROPANOIC HETNAM 2 2M8 ACID HETSYN 2M8 2-O-ALPHA-MANNOSYL-D-GLYCERATE; (2R)-3-HYDROXY-2- HETSYN 2 2M8 (ALPHA-D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 3 2M8 (D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 4 2M8 (MANNOSYLOXY)PROPANOIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 2M8 2(C9 H16 O9) FORMUL 9 HOH *445(H2 O) HELIX 1 1 LEU A 7 LEU A 12 1 6 HELIX 2 2 ALA A 21 LEU A 31 1 11 HELIX 3 3 THR A 42 LEU A 49 1 8 HELIX 4 4 GLU A 58 GLY A 60 5 3 HELIX 5 5 PRO A 88 GLY A 104 1 17 HELIX 6 6 TYR A 110 ASP A 112 5 3 HELIX 7 7 THR A 114 GLY A 123 1 10 HELIX 8 8 SER A 125 LYS A 133 1 9 HELIX 9 9 GLU A 147 VAL A 158 1 12 HELIX 10 10 ASP A 176 LEU A 187 1 12 HELIX 11 11 ASP A 190 ARG A 195 1 6 HELIX 12 12 SER A 203 ASN A 205 5 3 HELIX 13 13 ASP A 206 ALA A 212 1 7 HELIX 14 14 PRO A 234 LEU A 247 1 14 HELIX 15 15 LEU B 18 PRO B 20 5 3 HELIX 16 16 ALA B 21 LEU B 31 1 11 HELIX 17 17 THR B 42 LEU B 49 1 8 HELIX 18 18 GLU B 58 GLY B 60 5 3 HELIX 19 19 PRO B 88 GLY B 104 1 17 HELIX 20 20 THR B 114 GLY B 123 1 10 HELIX 21 21 SER B 125 ALA B 134 1 10 HELIX 22 22 CYS B 144 GLU B 146 5 3 HELIX 23 23 GLU B 147 VAL B 158 1 12 HELIX 24 24 ASP B 176 LEU B 187 1 12 HELIX 25 25 ASP B 190 ARG B 195 1 6 HELIX 26 26 SER B 203 ASN B 205 5 3 HELIX 27 27 ASP B 206 ALA B 212 1 7 HELIX 28 28 GLY B 235 TYR B 246 1 12 HELIX 29 29 LEU B 248 SER B 252 5 5 SHEET 1 AA 5 VAL A 35 PRO A 37 0 SHEET 2 AA 5 ILE A 2 THR A 5 1 O VAL A 3 N VAL A 36 SHEET 3 AA 5 ALA A 197 GLY A 201 1 O VAL A 198 N PHE A 4 SHEET 4 AA 5 LEU A 215 TYR A 218 1 O LEU A 215 N GLY A 199 SHEET 5 AA 5 LEU A 229 ALA A 230 1 O LEU A 229 N TYR A 218 SHEET 1 AB 4 PHE A 55 VAL A 57 0 SHEET 2 AB 4 GLY A 62 PRO A 66 -1 O GLY A 62 N VAL A 57 SHEET 3 AB 4 TYR A 80 SER A 84 -1 O ARG A 81 N LEU A 65 SHEET 4 AB 4 ARG A 75 LYS A 77 -1 O ARG A 75 N VAL A 82 SHEET 1 AC 3 GLU A 139 THR A 140 0 SHEET 2 AC 3 TYR A 169 ALA A 172 -1 O ALA A 171 N GLU A 139 SHEET 3 AC 3 GLU A 161 HIS A 164 -1 O GLU A 161 N ALA A 172 SHEET 1 BA 5 VAL B 35 PRO B 37 0 SHEET 2 BA 5 ILE B 2 THR B 5 1 O VAL B 3 N VAL B 36 SHEET 3 BA 5 ALA B 197 GLY B 201 1 O VAL B 198 N PHE B 4 SHEET 4 BA 5 LEU B 215 TYR B 218 1 O LEU B 215 N GLY B 199 SHEET 5 BA 5 LEU B 229 ALA B 230 1 O LEU B 229 N TYR B 218 SHEET 1 BB 4 PHE B 55 VAL B 57 0 SHEET 2 BB 4 GLY B 62 PRO B 66 -1 O GLY B 62 N VAL B 57 SHEET 3 BB 4 TYR B 80 SER B 84 -1 O ARG B 81 N LEU B 65 SHEET 4 BB 4 ARG B 75 LYS B 77 -1 O ARG B 75 N VAL B 82 SHEET 1 BC 4 LEU B 108 GLY B 109 0 SHEET 2 BC 4 GLU B 139 VAL B 142 -1 O VAL B 142 N LEU B 108 SHEET 3 BC 4 TYR B 169 ALA B 172 -1 O TYR B 169 N LEU B 141 SHEET 4 BC 4 GLU B 161 HIS B 164 -1 O GLU B 161 N ALA B 172 SSBOND 1 CYS A 144 CYS B 144 1555 1555 2.04 LINK OD2 ASP A 6 MG MG A 260 1555 1555 2.53 LINK O ASP A 8 MG MG A 260 1555 1555 2.59 LINK OD1 ASP A 202 MG MG A 260 1555 1555 2.74 LINK MG MG A 260 O3 PO4 A 261 1555 1555 1.91 LINK MG MG A 260 O HOH A2005 1555 1555 2.65 LINK MG MG A 260 O HOH A2172 1555 1555 2.60 LINK OD2 ASP B 6 MG MG B 260 1555 1555 2.10 LINK O ASP B 8 MG MG B 260 1555 1555 2.14 LINK OD1 ASP B 202 MG MG B 260 1555 1555 2.22 LINK MG MG B 260 O2 PO4 B 261 1555 1555 1.99 LINK MG MG B 260 O HOH B2007 1555 1555 2.19 LINK MG MG B 260 O HOH B2010 1555 1555 2.20 CISPEP 1 PRO A 53 PRO A 54 0 5.00 CISPEP 2 PRO B 53 PRO B 54 0 5.35 CRYST1 39.900 70.740 92.300 90.00 95.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025063 0.000000 0.002351 0.00000 SCALE2 0.000000 0.014136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010882 0.00000 MTRIX1 1 0.816770 0.007940 0.576910 -3.98789 1 MTRIX2 1 -0.013180 -0.999390 0.032410 110.62743 1 MTRIX3 1 0.576820 -0.034070 -0.816160 14.01073 1