data_3ZX7 # _entry.id 3ZX7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZX7 PDBE EBI-49224 WWPDB D_1290049224 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZXD unspecified 'WILD-TYPE LYSENIN' PDB 3ZXG unspecified 'LYSENIN SPHINGOMYELIN COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZX7 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-08-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'De Colibus, L.' 1 'Sonnen, A.F.P.' 2 'Morris, K.J.' 3 'Siebert, C.A.' 4 'Abrusci, P.' 5 'Plitzko, J.' 6 'Hodnik, V.' 7 'Leippe, M.' 8 'Volpi, E.' 9 'Anderluh, G.' 10 'Gilbert, R.J.C.' 11 # _citation.id primary _citation.title 'Structures of Lysenin Reveal a Shared Evolutionary Origin for Pore-Forming Proteins and its Mode of Sphingomyelin Recognition.' _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 1498 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22819216 _citation.pdbx_database_id_DOI 10.1016/J.STR.2012.06.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'De Colibus, L.' 1 primary 'Sonnen, A.F.P.' 2 primary 'Morris, K.J.' 3 primary 'Siebert, C.A.' 4 primary 'Abrusci, P.' 5 primary 'Plitzko, J.' 6 primary 'Hodnik, V.' 7 primary 'Leippe, M.' 8 primary 'Volpi, E.' 9 primary 'Anderluh, G.' 10 primary 'Gilbert, R.J.C.' 11 # _cell.entry_id 3ZX7 _cell.length_a 98.110 _cell.length_b 98.110 _cell.length_c 184.170 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZX7 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man LYSENIN 35127.418 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 5 ? ? ? ? 3 non-polymer syn PHOSPHOCHOLINE 184.151 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 5 water nat water 18.015 24 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SAKAAEGYEQIEVDVVAVWKEGYVYENRGSTSVDQKITITKG(MSE)KNVNSETRTVTATHSIGSTISTGDAFEIGSVEV SYSHSHEESQVS(MSE)TETEVYESKVIEHTITIPPTSKFTRWQLNADVGGADIEY(MSE)YLIDEVTPIGGTQSIPQVI TSRAKIIVGRQIILGKTEIRIKHAERKEY(MSE)TVVSRKSWPAATLGHSKLFKFVLYEDWGGFRIKTLNT(MSE)YSGY EYAYSSDQGGIYFDQGTDNPKQRWAINKSLPLRHGDVVTF(MSE)NKYFTRSGLCYDDGPATNVYCLDKREDKWILEVVG LVPRGSGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;SAKAAEGYEQIEVDVVAVWKEGYVYENRGSTSVDQKITITKGMKNVNSETRTVTATHSIGSTISTGDAFEIGSVEVSYSH SHEESQVSMTETEVYESKVIEHTITIPPTSKFTRWQLNADVGGADIEYMYLIDEVTPIGGTQSIPQVITSRAKIIVGRQI ILGKTEIRIKHAERKEYMTVVSRKSWPAATLGHSKLFKFVLYEDWGGFRIKTLNTMYSGYEYAYSSDQGGIYFDQGTDNP KQRWAINKSLPLRHGDVVTFMNKYFTRSGLCYDDGPATNVYCLDKREDKWILEVVGLVPRGSGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 LYS n 1 4 ALA n 1 5 ALA n 1 6 GLU n 1 7 GLY n 1 8 TYR n 1 9 GLU n 1 10 GLN n 1 11 ILE n 1 12 GLU n 1 13 VAL n 1 14 ASP n 1 15 VAL n 1 16 VAL n 1 17 ALA n 1 18 VAL n 1 19 TRP n 1 20 LYS n 1 21 GLU n 1 22 GLY n 1 23 TYR n 1 24 VAL n 1 25 TYR n 1 26 GLU n 1 27 ASN n 1 28 ARG n 1 29 GLY n 1 30 SER n 1 31 THR n 1 32 SER n 1 33 VAL n 1 34 ASP n 1 35 GLN n 1 36 LYS n 1 37 ILE n 1 38 THR n 1 39 ILE n 1 40 THR n 1 41 LYS n 1 42 GLY n 1 43 MSE n 1 44 LYS n 1 45 ASN n 1 46 VAL n 1 47 ASN n 1 48 SER n 1 49 GLU n 1 50 THR n 1 51 ARG n 1 52 THR n 1 53 VAL n 1 54 THR n 1 55 ALA n 1 56 THR n 1 57 HIS n 1 58 SER n 1 59 ILE n 1 60 GLY n 1 61 SER n 1 62 THR n 1 63 ILE n 1 64 SER n 1 65 THR n 1 66 GLY n 1 67 ASP n 1 68 ALA n 1 69 PHE n 1 70 GLU n 1 71 ILE n 1 72 GLY n 1 73 SER n 1 74 VAL n 1 75 GLU n 1 76 VAL n 1 77 SER n 1 78 TYR n 1 79 SER n 1 80 HIS n 1 81 SER n 1 82 HIS n 1 83 GLU n 1 84 GLU n 1 85 SER n 1 86 GLN n 1 87 VAL n 1 88 SER n 1 89 MSE n 1 90 THR n 1 91 GLU n 1 92 THR n 1 93 GLU n 1 94 VAL n 1 95 TYR n 1 96 GLU n 1 97 SER n 1 98 LYS n 1 99 VAL n 1 100 ILE n 1 101 GLU n 1 102 HIS n 1 103 THR n 1 104 ILE n 1 105 THR n 1 106 ILE n 1 107 PRO n 1 108 PRO n 1 109 THR n 1 110 SER n 1 111 LYS n 1 112 PHE n 1 113 THR n 1 114 ARG n 1 115 TRP n 1 116 GLN n 1 117 LEU n 1 118 ASN n 1 119 ALA n 1 120 ASP n 1 121 VAL n 1 122 GLY n 1 123 GLY n 1 124 ALA n 1 125 ASP n 1 126 ILE n 1 127 GLU n 1 128 TYR n 1 129 MSE n 1 130 TYR n 1 131 LEU n 1 132 ILE n 1 133 ASP n 1 134 GLU n 1 135 VAL n 1 136 THR n 1 137 PRO n 1 138 ILE n 1 139 GLY n 1 140 GLY n 1 141 THR n 1 142 GLN n 1 143 SER n 1 144 ILE n 1 145 PRO n 1 146 GLN n 1 147 VAL n 1 148 ILE n 1 149 THR n 1 150 SER n 1 151 ARG n 1 152 ALA n 1 153 LYS n 1 154 ILE n 1 155 ILE n 1 156 VAL n 1 157 GLY n 1 158 ARG n 1 159 GLN n 1 160 ILE n 1 161 ILE n 1 162 LEU n 1 163 GLY n 1 164 LYS n 1 165 THR n 1 166 GLU n 1 167 ILE n 1 168 ARG n 1 169 ILE n 1 170 LYS n 1 171 HIS n 1 172 ALA n 1 173 GLU n 1 174 ARG n 1 175 LYS n 1 176 GLU n 1 177 TYR n 1 178 MSE n 1 179 THR n 1 180 VAL n 1 181 VAL n 1 182 SER n 1 183 ARG n 1 184 LYS n 1 185 SER n 1 186 TRP n 1 187 PRO n 1 188 ALA n 1 189 ALA n 1 190 THR n 1 191 LEU n 1 192 GLY n 1 193 HIS n 1 194 SER n 1 195 LYS n 1 196 LEU n 1 197 PHE n 1 198 LYS n 1 199 PHE n 1 200 VAL n 1 201 LEU n 1 202 TYR n 1 203 GLU n 1 204 ASP n 1 205 TRP n 1 206 GLY n 1 207 GLY n 1 208 PHE n 1 209 ARG n 1 210 ILE n 1 211 LYS n 1 212 THR n 1 213 LEU n 1 214 ASN n 1 215 THR n 1 216 MSE n 1 217 TYR n 1 218 SER n 1 219 GLY n 1 220 TYR n 1 221 GLU n 1 222 TYR n 1 223 ALA n 1 224 TYR n 1 225 SER n 1 226 SER n 1 227 ASP n 1 228 GLN n 1 229 GLY n 1 230 GLY n 1 231 ILE n 1 232 TYR n 1 233 PHE n 1 234 ASP n 1 235 GLN n 1 236 GLY n 1 237 THR n 1 238 ASP n 1 239 ASN n 1 240 PRO n 1 241 LYS n 1 242 GLN n 1 243 ARG n 1 244 TRP n 1 245 ALA n 1 246 ILE n 1 247 ASN n 1 248 LYS n 1 249 SER n 1 250 LEU n 1 251 PRO n 1 252 LEU n 1 253 ARG n 1 254 HIS n 1 255 GLY n 1 256 ASP n 1 257 VAL n 1 258 VAL n 1 259 THR n 1 260 PHE n 1 261 MSE n 1 262 ASN n 1 263 LYS n 1 264 TYR n 1 265 PHE n 1 266 THR n 1 267 ARG n 1 268 SER n 1 269 GLY n 1 270 LEU n 1 271 CYS n 1 272 TYR n 1 273 ASP n 1 274 ASP n 1 275 GLY n 1 276 PRO n 1 277 ALA n 1 278 THR n 1 279 ASN n 1 280 VAL n 1 281 TYR n 1 282 CYS n 1 283 LEU n 1 284 ASP n 1 285 LYS n 1 286 ARG n 1 287 GLU n 1 288 ASP n 1 289 LYS n 1 290 TRP n 1 291 ILE n 1 292 LEU n 1 293 GLU n 1 294 VAL n 1 295 VAL n 1 296 GLY n 1 297 LEU n 1 298 VAL n 1 299 PRO n 1 300 ARG n 1 301 GLY n 1 302 SER n 1 303 GLY n 1 304 HIS n 1 305 HIS n 1 306 HIS n 1 307 HIS n 1 308 HIS n 1 309 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'COMMON BRANDLING WORM' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue 'COELOMIC FLUID' _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'EISENIA FETIDA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6396 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PTET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTETLYS1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TXL_EISFO _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O18423 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZX7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 296 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O18423 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 297 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 297 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZX7 LEU A 297 ? UNP O18423 ? ? 'expression tag' 298 1 1 3ZX7 VAL A 298 ? UNP O18423 ? ? 'expression tag' 299 2 1 3ZX7 PRO A 299 ? UNP O18423 ? ? 'expression tag' 300 3 1 3ZX7 ARG A 300 ? UNP O18423 ? ? 'expression tag' 301 4 1 3ZX7 GLY A 301 ? UNP O18423 ? ? 'expression tag' 302 5 1 3ZX7 SER A 302 ? UNP O18423 ? ? 'expression tag' 303 6 1 3ZX7 GLY A 303 ? UNP O18423 ? ? 'expression tag' 304 7 1 3ZX7 HIS A 304 ? UNP O18423 ? ? 'expression tag' 305 8 1 3ZX7 HIS A 305 ? UNP O18423 ? ? 'expression tag' 306 9 1 3ZX7 HIS A 306 ? UNP O18423 ? ? 'expression tag' 307 10 1 3ZX7 HIS A 307 ? UNP O18423 ? ? 'expression tag' 308 11 1 3ZX7 HIS A 308 ? UNP O18423 ? ? 'expression tag' 309 12 1 3ZX7 HIS A 309 ? UNP O18423 ? ? 'expression tag' 310 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PC non-polymer . PHOSPHOCHOLINE ? 'C5 H15 N O4 P 1' 184.151 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZX7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.68 _exptl_crystal.density_percent_sol 66.61 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.8 M AMMONIUM DI-HYDROGEN PHOSPHATE, 1.0 M SODIUM ACETATE PH 4.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-04-18 _diffrn_detector.details 'BENT COLLIMATING MIRROR AND TOROID' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97867 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 0.97867 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZX7 _reflns.observed_criterion_sigma_I 6.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.10 _reflns.d_resolution_high 2.80 _reflns.number_obs 12994 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.00 _reflns.B_iso_Wilson_estimate 72.61 _reflns.pdbx_redundancy 22.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.80 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.90 _reflns_shell.pdbx_redundancy 23 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZX7 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12930 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.70 _refine.ls_d_res_high 2.84 _refine.ls_percent_reflns_obs 99.57 _refine.ls_R_factor_obs 0.2255 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2235 _refine.ls_R_factor_R_free 0.2640 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.87 _refine.ls_number_reflns_R_free 630 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.8919 _refine.correlation_coeff_Fo_to_Fc_free 0.8532 _refine.B_iso_mean 75.88 _refine.aniso_B[1][1] -3.3721 _refine.aniso_B[2][2] -3.3721 _refine.aniso_B[3][3] 6.7443 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;IDEAL-DIST CONTACT TERM CONTACT SETUP. RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=PO4 PC. NUMBER OF ATOMS WITH PROPER CCP4 ATOM TYPE=4713. NUMBER WITH APPROX DEFAULT CCP4 ATOM TYPE=58. NUMBER TREATED BY BAD NON-BONDED CONTACTS=6. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI 0.628 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.330 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3ZX7 _refine_analyze.Luzzati_coordinate_error_obs 0.499 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2355 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 72 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 2451 _refine_hist.d_res_high 2.84 _refine_hist.d_res_low 23.70 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.009 ? 2.00 4770 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.11 ? 2.00 8576 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 1037 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 57 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 698 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 4770 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? 5.00 0 'X-RAY DIFFRACTION' SEMIHARMONIC t_omega_torsion 2.97 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 18.06 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 323 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 5048 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 2.84 _refine_ls_shell.d_res_low 3.07 _refine_ls_shell.number_reflns_R_work 2435 _refine_ls_shell.R_factor_R_work 0.2286 _refine_ls_shell.percent_reflns_obs 99.57 _refine_ls_shell.R_factor_R_free 0.3229 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.18 _refine_ls_shell.number_reflns_R_free 133 _refine_ls_shell.number_reflns_all 2568 _refine_ls_shell.R_factor_all 0.2335 # _struct.entry_id 3ZX7 _struct.title 'Complex of lysenin with phosphocholine' _struct.pdbx_descriptor LYSENIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZX7 _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, PORE FORMING TOXIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 90 ? TYR A 95 ? THR A 91 TYR A 96 1 ? 6 HELX_P HELX_P2 2 ASN A 239 ? GLN A 242 ? ASN A 240 GLN A 243 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 43 N ? ? ? 1_555 A GLY 42 C ? ? A MSE 44 A GLY 43 1_555 ? ? ? ? ? ? ? 1.347 ? covale2 covale ? ? A MSE 43 C ? ? ? 1_555 A LYS 44 N ? ? A MSE 44 A LYS 45 1_555 ? ? ? ? ? ? ? 1.346 ? covale3 covale ? ? A MSE 89 N ? ? ? 1_555 A SER 88 C ? ? A MSE 90 A SER 89 1_555 ? ? ? ? ? ? ? 1.349 ? covale4 covale ? ? A MSE 89 C ? ? ? 1_555 A THR 90 N ? ? A MSE 90 A THR 91 1_555 ? ? ? ? ? ? ? 1.343 ? covale5 covale ? ? A MSE 129 N ? ? ? 1_555 A TYR 128 C ? ? A MSE 130 A TYR 129 1_555 ? ? ? ? ? ? ? 1.363 ? covale6 covale ? ? A MSE 129 C ? ? ? 1_555 A TYR 130 N ? ? A MSE 130 A TYR 131 1_555 ? ? ? ? ? ? ? 1.343 ? covale7 covale ? ? A MSE 178 N ? ? ? 1_555 A TYR 177 C ? ? A MSE 179 A TYR 178 1_555 ? ? ? ? ? ? ? 1.339 ? covale8 covale ? ? A MSE 178 C ? ? ? 1_555 A THR 179 N ? ? A MSE 179 A THR 180 1_555 ? ? ? ? ? ? ? 1.336 ? covale9 covale ? ? A MSE 216 C ? ? ? 1_555 A TYR 217 N ? ? A MSE 217 A TYR 218 1_555 ? ? ? ? ? ? ? 1.352 ? covale10 covale ? ? A MSE 216 N ? ? ? 1_555 A THR 215 C ? ? A MSE 217 A THR 216 1_555 ? ? ? ? ? ? ? 1.339 ? covale11 covale ? ? A MSE 261 C ? ? ? 1_555 A ASN 262 N ? ? A MSE 262 A ASN 263 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? A MSE 261 N ? ? ? 1_555 A PHE 260 C ? ? A MSE 262 A PHE 261 1_555 ? ? ? ? ? ? ? 1.333 ? metalc1 metalc ? ? E PO4 . O1 ? ? ? 1_555 H NA . NA ? ? A PO4 884 A NA 903 1_555 ? ? ? ? ? ? ? 2.966 ? metalc2 metalc ? ? I NA . NA ? ? ? 1_555 A GLY 275 O ? ? A NA 904 A GLY 276 1_555 ? ? ? ? ? ? ? 2.987 ? metalc3 metalc ? ? J NA . NA ? ? ? 1_555 A ASP 234 OD2 ? ? A NA 905 A ASP 235 1_555 ? ? ? ? ? ? ? 3.009 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 30 A . ? SER 31 A THR 31 A ? THR 32 A 1 2.13 2 HIS 80 A . ? HIS 81 A SER 81 A ? SER 82 A 1 -4.09 3 ILE 138 A . ? ILE 139 A GLY 139 A ? GLY 140 A 1 0.73 4 LEU 250 A . ? LEU 251 A PRO 251 A ? PRO 252 A 1 0.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? AC ? 2 ? AD ? 2 ? AE ? 5 ? AF ? 5 ? AG ? 2 ? AH ? 5 ? AI ? 5 ? AJ ? 2 ? AK ? 2 ? AL ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AE 4 5 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AF 3 4 ? anti-parallel AF 4 5 ? anti-parallel AG 1 2 ? anti-parallel AH 1 2 ? anti-parallel AH 2 3 ? anti-parallel AH 3 4 ? anti-parallel AH 4 5 ? anti-parallel AI 1 2 ? anti-parallel AI 2 3 ? anti-parallel AI 3 4 ? anti-parallel AI 4 5 ? anti-parallel AJ 1 2 ? anti-parallel AK 1 2 ? anti-parallel AL 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TYR A 8 ? ASP A 14 ? TYR A 9 ASP A 15 AA 2 GLN A 146 ? GLY A 157 ? GLN A 147 GLY A 158 AA 3 ALA A 68 ? SER A 79 ? ALA A 69 SER A 80 AA 4 GLU A 84 ? MSE A 89 ? GLU A 85 MSE A 90 AB 1 TYR A 8 ? ASP A 14 ? TYR A 9 ASP A 15 AB 2 GLN A 146 ? GLY A 157 ? GLN A 147 GLY A 158 AB 3 ALA A 68 ? SER A 79 ? ALA A 69 SER A 80 AB 4 VAL A 53 ? THR A 54 ? VAL A 54 THR A 55 AC 1 GLU A 84 ? MSE A 89 ? GLU A 85 MSE A 90 AC 2 ALA A 68 ? SER A 79 ? ALA A 69 SER A 80 AD 1 VAL A 16 ? ASN A 27 ? VAL A 17 ASN A 28 AD 2 SER A 110 ? VAL A 121 ? SER A 111 VAL A 122 AE 1 LYS A 98 ? ILE A 106 ? LYS A 99 ILE A 107 AE 2 VAL A 33 ? MSE A 43 ? VAL A 34 MSE A 44 AE 3 ALA A 124 ? LEU A 131 ? ALA A 125 LEU A 132 AE 4 SER A 110 ? VAL A 121 ? SER A 111 VAL A 122 AE 5 VAL A 135 ? PRO A 137 ? VAL A 136 PRO A 138 AF 1 LYS A 98 ? ILE A 106 ? LYS A 99 ILE A 107 AF 2 VAL A 33 ? MSE A 43 ? VAL A 34 MSE A 44 AF 3 ALA A 124 ? LEU A 131 ? ALA A 125 LEU A 132 AF 4 SER A 110 ? VAL A 121 ? SER A 111 VAL A 122 AF 5 VAL A 16 ? ASN A 27 ? VAL A 17 ASN A 28 AG 1 VAL A 135 ? PRO A 137 ? VAL A 136 PRO A 138 AG 2 SER A 110 ? VAL A 121 ? SER A 111 VAL A 122 AH 1 TRP A 186 ? GLY A 192 ? TRP A 187 GLY A 193 AH 2 GLU A 176 ? ARG A 183 ? GLU A 177 ARG A 184 AH 3 GLU A 166 ? HIS A 171 ? GLU A 167 HIS A 172 AH 4 TRP A 290 ? VAL A 294 ? TRP A 291 VAL A 295 AH 5 VAL A 257 ? VAL A 258 ? VAL A 258 VAL A 259 AI 1 TRP A 186 ? GLY A 192 ? TRP A 187 GLY A 193 AI 2 GLU A 176 ? ARG A 183 ? GLU A 177 ARG A 184 AI 3 GLU A 166 ? HIS A 171 ? GLU A 167 HIS A 172 AI 4 PHE A 199 ? ASP A 204 ? PHE A 200 ASP A 205 AI 5 GLY A 207 ? THR A 212 ? GLY A 208 THR A 213 AJ 1 TYR A 222 ? SER A 225 ? TYR A 223 SER A 226 AJ 2 ILE A 231 ? ASP A 234 ? ILE A 232 ASP A 235 AK 1 TRP A 244 ? ILE A 246 ? TRP A 245 ILE A 247 AK 2 PHE A 260 ? ASN A 262 ? PHE A 261 ASN A 263 AL 1 SER A 268 ? TYR A 272 ? SER A 269 TYR A 273 AL 2 VAL A 280 ? ASP A 284 ? VAL A 281 ASP A 285 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 13 ? N VAL A 14 O ALA A 152 ? O ALA A 153 AA 2 3 N ILE A 155 ? N ILE A 156 O GLU A 70 ? O GLU A 71 AA 3 4 N TYR A 78 ? N TYR A 79 O SER A 85 ? O SER A 86 AB 1 2 N VAL A 13 ? N VAL A 14 O ALA A 152 ? O ALA A 153 AB 2 3 N ILE A 155 ? N ILE A 156 O GLU A 70 ? O GLU A 71 AB 3 4 N PHE A 69 ? N PHE A 70 O VAL A 53 ? O VAL A 54 AC 1 2 N MSE A 89 ? N MSE A 90 O VAL A 74 ? O VAL A 75 AD 1 2 N ASN A 27 ? N ASN A 28 O SER A 110 ? O SER A 111 AE 1 2 N ILE A 106 ? N ILE A 107 O VAL A 33 ? O VAL A 34 AE 2 3 N GLY A 42 ? N GLY A 43 O GLU A 127 ? O GLU A 128 AE 3 4 N MSE A 129 ? N MSE A 130 O LEU A 117 ? O LEU A 118 AE 4 5 N LYS A 111 ? N LYS A 112 O THR A 136 ? O THR A 137 AF 1 2 N ILE A 106 ? N ILE A 107 O VAL A 33 ? O VAL A 34 AF 2 3 N GLY A 42 ? N GLY A 43 O GLU A 127 ? O GLU A 128 AF 3 4 N MSE A 129 ? N MSE A 130 O LEU A 117 ? O LEU A 118 AF 4 5 N ASP A 120 ? N ASP A 121 O VAL A 16 ? O VAL A 17 AG 1 2 N THR A 136 ? N THR A 137 O LYS A 111 ? O LYS A 112 AH 1 2 N GLY A 192 ? N GLY A 193 O TYR A 177 ? O TYR A 178 AH 2 3 N MSE A 178 ? N MSE A 179 O ILE A 169 ? O ILE A 170 AH 3 4 N LYS A 170 ? N LYS A 171 O ILE A 291 ? O ILE A 292 AH 4 5 N TRP A 290 ? N TRP A 291 O VAL A 258 ? O VAL A 259 AI 1 2 N GLY A 192 ? N GLY A 193 O TYR A 177 ? O TYR A 178 AI 2 3 N MSE A 178 ? N MSE A 179 O ILE A 169 ? O ILE A 170 AI 3 4 N ILE A 167 ? N ILE A 168 O PHE A 199 ? O PHE A 200 AI 4 5 N ASP A 204 ? N ASP A 205 O GLY A 207 ? O GLY A 208 AJ 1 2 N TYR A 224 ? N TYR A 225 O TYR A 232 ? O TYR A 233 AK 1 2 N ALA A 245 ? N ALA A 246 O MSE A 261 ? O MSE A 262 AL 1 2 N CYS A 271 ? N CYS A 272 O TYR A 281 ? O TYR A 282 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE PO4 A 881' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 A 882' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 A 883' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 A 884' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PO4 A 888' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NA A 903' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA A 904' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NA A 905' AC9 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE PC A 900' BC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PC A 990' BC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE PC A 991' BC3 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE PC A 992' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 GLU A 83 ? GLU A 84 . ? 1_555 ? 2 AC2 4 GLU A 6 ? GLU A 7 . ? 1_555 ? 3 AC2 4 ARG A 168 ? ARG A 169 . ? 1_555 ? 4 AC2 4 GLY A 296 ? GLY A 297 . ? 1_555 ? 5 AC2 4 HOH N . ? HOH A 2001 . ? 1_555 ? 6 AC3 4 LEU A 162 ? LEU A 163 . ? 1_555 ? 7 AC3 4 GLY A 163 ? GLY A 164 . ? 1_555 ? 8 AC3 4 TYR A 202 ? TYR A 203 . ? 1_555 ? 9 AC3 4 GLU A 203 ? GLU A 204 . ? 1_555 ? 10 AC4 4 GLU A 203 ? GLU A 204 . ? 1_555 ? 11 AC4 4 ASP A 204 ? ASP A 205 . ? 1_555 ? 12 AC4 4 TRP A 205 ? TRP A 206 . ? 1_555 ? 13 AC4 4 NA H . ? NA A 903 . ? 1_555 ? 14 AC5 3 GLU A 173 ? GLU A 174 . ? 1_555 ? 15 AC5 3 ASP A 288 ? ASP A 289 . ? 1_555 ? 16 AC5 3 LYS A 289 ? LYS A 290 . ? 1_555 ? 17 AC6 3 ASP A 204 ? ASP A 205 . ? 1_555 ? 18 AC6 3 TRP A 205 ? TRP A 206 . ? 1_555 ? 19 AC6 3 PO4 E . ? PO4 A 884 . ? 1_555 ? 20 AC7 2 ASP A 274 ? ASP A 275 . ? 1_555 ? 21 AC7 2 GLY A 275 ? GLY A 276 . ? 1_555 ? 22 AC8 3 TYR A 224 ? TYR A 225 . ? 1_555 ? 23 AC8 3 ASP A 234 ? ASP A 235 . ? 1_555 ? 24 AC8 3 ASN A 239 ? ASN A 240 . ? 1_555 ? 25 AC9 12 GLU A 6 ? GLU A 7 . ? 6_554 ? 26 AC9 12 GLY A 7 ? GLY A 8 . ? 6_554 ? 27 AC9 12 ARG A 158 ? ARG A 159 . ? 6_554 ? 28 AC9 12 ARG A 183 ? ARG A 184 . ? 1_555 ? 29 AC9 12 LYS A 184 ? LYS A 185 . ? 1_555 ? 30 AC9 12 SER A 226 ? SER A 227 . ? 1_555 ? 31 AC9 12 GLN A 228 ? GLN A 229 . ? 1_555 ? 32 AC9 12 TYR A 232 ? TYR A 233 . ? 1_555 ? 33 AC9 12 PRO A 276 ? PRO A 277 . ? 1_555 ? 34 AC9 12 TYR A 281 ? TYR A 282 . ? 1_555 ? 35 AC9 12 GLY A 296 ? GLY A 297 . ? 6_554 ? 36 AC9 12 LEU A 297 ? LEU A 298 . ? 6_554 ? 37 BC1 5 THR A 237 ? THR A 238 . ? 1_555 ? 38 BC1 5 ASP A 238 ? ASP A 239 . ? 8_555 ? 39 BC1 5 ASP A 238 ? ASP A 239 . ? 1_555 ? 40 BC1 5 ASN A 239 ? ASN A 240 . ? 8_555 ? 41 BC1 5 ASN A 239 ? ASN A 240 . ? 1_555 ? 42 BC2 7 SER A 81 ? SER A 82 . ? 1_555 ? 43 BC2 7 THR A 103 ? THR A 104 . ? 10_665 ? 44 BC2 7 ILE A 104 ? ILE A 105 . ? 10_665 ? 45 BC2 7 THR A 105 ? THR A 106 . ? 10_665 ? 46 BC2 7 ILE A 132 ? ILE A 133 . ? 1_555 ? 47 BC2 7 ASP A 133 ? ASP A 134 . ? 1_555 ? 48 BC2 7 GLU A 134 ? GLU A 135 . ? 1_555 ? 49 BC3 11 GLU A 9 ? GLU A 10 . ? 6_554 ? 50 BC3 11 ARG A 158 ? ARG A 159 . ? 6_554 ? 51 BC3 11 GLN A 159 ? GLN A 160 . ? 6_554 ? 52 BC3 11 SER A 226 ? SER A 227 . ? 1_555 ? 53 BC3 11 ASP A 227 ? ASP A 228 . ? 1_555 ? 54 BC3 11 GLY A 229 ? GLY A 230 . ? 1_555 ? 55 BC3 11 PHE A 265 ? PHE A 266 . ? 1_555 ? 56 BC3 11 SER A 268 ? SER A 269 . ? 1_555 ? 57 BC3 11 CYS A 282 ? CYS A 283 . ? 1_555 ? 58 BC3 11 LEU A 283 ? LEU A 284 . ? 1_555 ? 59 BC3 11 ASP A 284 ? ASP A 285 . ? 1_555 ? # _database_PDB_matrix.entry_id 3ZX7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZX7 _atom_sites.fract_transf_matrix[1][1] 0.010193 _atom_sites.fract_transf_matrix[1][2] 0.005885 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011769 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005430 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 ? ? ? A . n A 1 2 ALA 2 3 ? ? ? A . n A 1 3 LYS 3 4 ? ? ? A . n A 1 4 ALA 4 5 ? ? ? A . n A 1 5 ALA 5 6 6 ALA ALA A . n A 1 6 GLU 6 7 7 GLU GLU A . n A 1 7 GLY 7 8 8 GLY GLY A . n A 1 8 TYR 8 9 9 TYR TYR A . n A 1 9 GLU 9 10 10 GLU GLU A . n A 1 10 GLN 10 11 11 GLN GLN A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 GLU 12 13 13 GLU GLU A . n A 1 13 VAL 13 14 14 VAL VAL A . n A 1 14 ASP 14 15 15 ASP ASP A . n A 1 15 VAL 15 16 16 VAL VAL A . n A 1 16 VAL 16 17 17 VAL VAL A . n A 1 17 ALA 17 18 18 ALA ALA A . n A 1 18 VAL 18 19 19 VAL VAL A . n A 1 19 TRP 19 20 20 TRP TRP A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 GLU 21 22 22 GLU GLU A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 TYR 23 24 24 TYR TYR A . n A 1 24 VAL 24 25 25 VAL VAL A . n A 1 25 TYR 25 26 26 TYR TYR A . n A 1 26 GLU 26 27 27 GLU GLU A . n A 1 27 ASN 27 28 28 ASN ASN A . n A 1 28 ARG 28 29 29 ARG ARG A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 SER 30 31 31 SER SER A . n A 1 31 THR 31 32 32 THR THR A . n A 1 32 SER 32 33 33 SER SER A . n A 1 33 VAL 33 34 34 VAL VAL A . n A 1 34 ASP 34 35 35 ASP ASP A . n A 1 35 GLN 35 36 36 GLN GLN A . n A 1 36 LYS 36 37 37 LYS LYS A . n A 1 37 ILE 37 38 38 ILE ILE A . n A 1 38 THR 38 39 39 THR THR A . n A 1 39 ILE 39 40 40 ILE ILE A . n A 1 40 THR 40 41 41 THR THR A . n A 1 41 LYS 41 42 42 LYS LYS A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 MSE 43 44 44 MSE MSE A . n A 1 44 LYS 44 45 45 LYS LYS A . n A 1 45 ASN 45 46 46 ASN ASN A . n A 1 46 VAL 46 47 47 VAL VAL A . n A 1 47 ASN 47 48 48 ASN ASN A . n A 1 48 SER 48 49 49 SER SER A . n A 1 49 GLU 49 50 50 GLU GLU A . n A 1 50 THR 50 51 51 THR THR A . n A 1 51 ARG 51 52 52 ARG ARG A . n A 1 52 THR 52 53 53 THR THR A . n A 1 53 VAL 53 54 54 VAL VAL A . n A 1 54 THR 54 55 55 THR THR A . n A 1 55 ALA 55 56 56 ALA ALA A . n A 1 56 THR 56 57 57 THR THR A . n A 1 57 HIS 57 58 58 HIS HIS A . n A 1 58 SER 58 59 59 SER SER A . n A 1 59 ILE 59 60 60 ILE ILE A . n A 1 60 GLY 60 61 61 GLY GLY A . n A 1 61 SER 61 62 62 SER SER A . n A 1 62 THR 62 63 63 THR THR A . n A 1 63 ILE 63 64 64 ILE ILE A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 THR 65 66 66 THR THR A . n A 1 66 GLY 66 67 67 GLY GLY A . n A 1 67 ASP 67 68 68 ASP ASP A . n A 1 68 ALA 68 69 69 ALA ALA A . n A 1 69 PHE 69 70 70 PHE PHE A . n A 1 70 GLU 70 71 71 GLU GLU A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 GLY 72 73 73 GLY GLY A . n A 1 73 SER 73 74 74 SER SER A . n A 1 74 VAL 74 75 75 VAL VAL A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 VAL 76 77 77 VAL VAL A . n A 1 77 SER 77 78 78 SER SER A . n A 1 78 TYR 78 79 79 TYR TYR A . n A 1 79 SER 79 80 80 SER SER A . n A 1 80 HIS 80 81 81 HIS HIS A . n A 1 81 SER 81 82 82 SER SER A . n A 1 82 HIS 82 83 83 HIS HIS A . n A 1 83 GLU 83 84 84 GLU GLU A . n A 1 84 GLU 84 85 85 GLU GLU A . n A 1 85 SER 85 86 86 SER SER A . n A 1 86 GLN 86 87 87 GLN GLN A . n A 1 87 VAL 87 88 88 VAL VAL A . n A 1 88 SER 88 89 89 SER SER A . n A 1 89 MSE 89 90 90 MSE MSE A . n A 1 90 THR 90 91 91 THR THR A . n A 1 91 GLU 91 92 92 GLU GLU A . n A 1 92 THR 92 93 93 THR THR A . n A 1 93 GLU 93 94 94 GLU GLU A . n A 1 94 VAL 94 95 95 VAL VAL A . n A 1 95 TYR 95 96 96 TYR TYR A . n A 1 96 GLU 96 97 97 GLU GLU A . n A 1 97 SER 97 98 98 SER SER A . n A 1 98 LYS 98 99 99 LYS LYS A . n A 1 99 VAL 99 100 100 VAL VAL A . n A 1 100 ILE 100 101 101 ILE ILE A . n A 1 101 GLU 101 102 102 GLU GLU A . n A 1 102 HIS 102 103 103 HIS HIS A . n A 1 103 THR 103 104 104 THR THR A . n A 1 104 ILE 104 105 105 ILE ILE A . n A 1 105 THR 105 106 106 THR THR A . n A 1 106 ILE 106 107 107 ILE ILE A . n A 1 107 PRO 107 108 108 PRO PRO A . n A 1 108 PRO 108 109 109 PRO PRO A . n A 1 109 THR 109 110 110 THR THR A . n A 1 110 SER 110 111 111 SER SER A . n A 1 111 LYS 111 112 112 LYS LYS A . n A 1 112 PHE 112 113 113 PHE PHE A . n A 1 113 THR 113 114 114 THR THR A . n A 1 114 ARG 114 115 115 ARG ARG A . n A 1 115 TRP 115 116 116 TRP TRP A . n A 1 116 GLN 116 117 117 GLN GLN A . n A 1 117 LEU 117 118 118 LEU LEU A . n A 1 118 ASN 118 119 119 ASN ASN A . n A 1 119 ALA 119 120 120 ALA ALA A . n A 1 120 ASP 120 121 121 ASP ASP A . n A 1 121 VAL 121 122 122 VAL VAL A . n A 1 122 GLY 122 123 123 GLY GLY A . n A 1 123 GLY 123 124 124 GLY GLY A . n A 1 124 ALA 124 125 125 ALA ALA A . n A 1 125 ASP 125 126 126 ASP ASP A . n A 1 126 ILE 126 127 127 ILE ILE A . n A 1 127 GLU 127 128 128 GLU GLU A . n A 1 128 TYR 128 129 129 TYR TYR A . n A 1 129 MSE 129 130 130 MSE MSE A . n A 1 130 TYR 130 131 131 TYR TYR A . n A 1 131 LEU 131 132 132 LEU LEU A . n A 1 132 ILE 132 133 133 ILE ILE A . n A 1 133 ASP 133 134 134 ASP ASP A . n A 1 134 GLU 134 135 135 GLU GLU A . n A 1 135 VAL 135 136 136 VAL VAL A . n A 1 136 THR 136 137 137 THR THR A . n A 1 137 PRO 137 138 138 PRO PRO A . n A 1 138 ILE 138 139 139 ILE ILE A . n A 1 139 GLY 139 140 140 GLY GLY A . n A 1 140 GLY 140 141 141 GLY GLY A . n A 1 141 THR 141 142 142 THR THR A . n A 1 142 GLN 142 143 143 GLN GLN A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 ILE 144 145 145 ILE ILE A . n A 1 145 PRO 145 146 146 PRO PRO A . n A 1 146 GLN 146 147 147 GLN GLN A . n A 1 147 VAL 147 148 148 VAL VAL A . n A 1 148 ILE 148 149 149 ILE ILE A . n A 1 149 THR 149 150 150 THR THR A . n A 1 150 SER 150 151 151 SER SER A . n A 1 151 ARG 151 152 152 ARG ARG A . n A 1 152 ALA 152 153 153 ALA ALA A . n A 1 153 LYS 153 154 154 LYS LYS A . n A 1 154 ILE 154 155 155 ILE ILE A . n A 1 155 ILE 155 156 156 ILE ILE A . n A 1 156 VAL 156 157 157 VAL VAL A . n A 1 157 GLY 157 158 158 GLY GLY A . n A 1 158 ARG 158 159 159 ARG ARG A . n A 1 159 GLN 159 160 160 GLN GLN A . n A 1 160 ILE 160 161 161 ILE ILE A . n A 1 161 ILE 161 162 162 ILE ILE A . n A 1 162 LEU 162 163 163 LEU LEU A . n A 1 163 GLY 163 164 164 GLY GLY A . n A 1 164 LYS 164 165 165 LYS LYS A . n A 1 165 THR 165 166 166 THR THR A . n A 1 166 GLU 166 167 167 GLU GLU A . n A 1 167 ILE 167 168 168 ILE ILE A . n A 1 168 ARG 168 169 169 ARG ARG A . n A 1 169 ILE 169 170 170 ILE ILE A . n A 1 170 LYS 170 171 171 LYS LYS A . n A 1 171 HIS 171 172 172 HIS HIS A . n A 1 172 ALA 172 173 173 ALA ALA A . n A 1 173 GLU 173 174 174 GLU GLU A . n A 1 174 ARG 174 175 175 ARG ARG A . n A 1 175 LYS 175 176 176 LYS LYS A . n A 1 176 GLU 176 177 177 GLU GLU A . n A 1 177 TYR 177 178 178 TYR TYR A . n A 1 178 MSE 178 179 179 MSE MSE A . n A 1 179 THR 179 180 180 THR THR A . n A 1 180 VAL 180 181 181 VAL VAL A . n A 1 181 VAL 181 182 182 VAL VAL A . n A 1 182 SER 182 183 183 SER SER A . n A 1 183 ARG 183 184 184 ARG ARG A . n A 1 184 LYS 184 185 185 LYS LYS A . n A 1 185 SER 185 186 186 SER SER A . n A 1 186 TRP 186 187 187 TRP TRP A . n A 1 187 PRO 187 188 188 PRO PRO A . n A 1 188 ALA 188 189 189 ALA ALA A . n A 1 189 ALA 189 190 190 ALA ALA A . n A 1 190 THR 190 191 191 THR THR A . n A 1 191 LEU 191 192 192 LEU LEU A . n A 1 192 GLY 192 193 193 GLY GLY A . n A 1 193 HIS 193 194 194 HIS HIS A . n A 1 194 SER 194 195 195 SER SER A . n A 1 195 LYS 195 196 196 LYS LYS A . n A 1 196 LEU 196 197 197 LEU LEU A . n A 1 197 PHE 197 198 198 PHE PHE A . n A 1 198 LYS 198 199 199 LYS LYS A . n A 1 199 PHE 199 200 200 PHE PHE A . n A 1 200 VAL 200 201 201 VAL VAL A . n A 1 201 LEU 201 202 202 LEU LEU A . n A 1 202 TYR 202 203 203 TYR TYR A . n A 1 203 GLU 203 204 204 GLU GLU A . n A 1 204 ASP 204 205 205 ASP ASP A . n A 1 205 TRP 205 206 206 TRP TRP A . n A 1 206 GLY 206 207 207 GLY GLY A . n A 1 207 GLY 207 208 208 GLY GLY A . n A 1 208 PHE 208 209 209 PHE PHE A . n A 1 209 ARG 209 210 210 ARG ARG A . n A 1 210 ILE 210 211 211 ILE ILE A . n A 1 211 LYS 211 212 212 LYS LYS A . n A 1 212 THR 212 213 213 THR THR A . n A 1 213 LEU 213 214 214 LEU LEU A . n A 1 214 ASN 214 215 215 ASN ASN A . n A 1 215 THR 215 216 216 THR THR A . n A 1 216 MSE 216 217 217 MSE MSE A . n A 1 217 TYR 217 218 218 TYR TYR A . n A 1 218 SER 218 219 219 SER SER A . n A 1 219 GLY 219 220 220 GLY GLY A . n A 1 220 TYR 220 221 221 TYR TYR A . n A 1 221 GLU 221 222 222 GLU GLU A . n A 1 222 TYR 222 223 223 TYR TYR A . n A 1 223 ALA 223 224 224 ALA ALA A . n A 1 224 TYR 224 225 225 TYR TYR A . n A 1 225 SER 225 226 226 SER SER A . n A 1 226 SER 226 227 227 SER SER A . n A 1 227 ASP 227 228 228 ASP ASP A . n A 1 228 GLN 228 229 229 GLN GLN A . n A 1 229 GLY 229 230 230 GLY GLY A . n A 1 230 GLY 230 231 231 GLY GLY A . n A 1 231 ILE 231 232 232 ILE ILE A . n A 1 232 TYR 232 233 233 TYR TYR A . n A 1 233 PHE 233 234 234 PHE PHE A . n A 1 234 ASP 234 235 235 ASP ASP A . n A 1 235 GLN 235 236 236 GLN GLN A . n A 1 236 GLY 236 237 237 GLY GLY A . n A 1 237 THR 237 238 238 THR THR A . n A 1 238 ASP 238 239 239 ASP ASP A . n A 1 239 ASN 239 240 240 ASN ASN A . n A 1 240 PRO 240 241 241 PRO PRO A . n A 1 241 LYS 241 242 242 LYS LYS A . n A 1 242 GLN 242 243 243 GLN GLN A . n A 1 243 ARG 243 244 244 ARG ARG A . n A 1 244 TRP 244 245 245 TRP TRP A . n A 1 245 ALA 245 246 246 ALA ALA A . n A 1 246 ILE 246 247 247 ILE ILE A . n A 1 247 ASN 247 248 248 ASN ASN A . n A 1 248 LYS 248 249 249 LYS LYS A . n A 1 249 SER 249 250 250 SER SER A . n A 1 250 LEU 250 251 251 LEU LEU A . n A 1 251 PRO 251 252 252 PRO PRO A . n A 1 252 LEU 252 253 253 LEU LEU A . n A 1 253 ARG 253 254 254 ARG ARG A . n A 1 254 HIS 254 255 255 HIS HIS A . n A 1 255 GLY 255 256 256 GLY GLY A . n A 1 256 ASP 256 257 257 ASP ASP A . n A 1 257 VAL 257 258 258 VAL VAL A . n A 1 258 VAL 258 259 259 VAL VAL A . n A 1 259 THR 259 260 260 THR THR A . n A 1 260 PHE 260 261 261 PHE PHE A . n A 1 261 MSE 261 262 262 MSE MSE A . n A 1 262 ASN 262 263 263 ASN ASN A . n A 1 263 LYS 263 264 264 LYS LYS A . n A 1 264 TYR 264 265 265 TYR TYR A . n A 1 265 PHE 265 266 266 PHE PHE A . n A 1 266 THR 266 267 267 THR THR A . n A 1 267 ARG 267 268 268 ARG ARG A . n A 1 268 SER 268 269 269 SER SER A . n A 1 269 GLY 269 270 270 GLY GLY A . n A 1 270 LEU 270 271 271 LEU LEU A . n A 1 271 CYS 271 272 272 CYS CYS A . n A 1 272 TYR 272 273 273 TYR TYR A . n A 1 273 ASP 273 274 274 ASP ASP A . n A 1 274 ASP 274 275 275 ASP ASP A . n A 1 275 GLY 275 276 276 GLY GLY A . n A 1 276 PRO 276 277 277 PRO PRO A . n A 1 277 ALA 277 278 278 ALA ALA A . n A 1 278 THR 278 279 279 THR THR A . n A 1 279 ASN 279 280 280 ASN ASN A . n A 1 280 VAL 280 281 281 VAL VAL A . n A 1 281 TYR 281 282 282 TYR TYR A . n A 1 282 CYS 282 283 283 CYS CYS A . n A 1 283 LEU 283 284 284 LEU LEU A . n A 1 284 ASP 284 285 285 ASP ASP A . n A 1 285 LYS 285 286 286 LYS LYS A . n A 1 286 ARG 286 287 287 ARG ARG A . n A 1 287 GLU 287 288 288 GLU GLU A . n A 1 288 ASP 288 289 289 ASP ASP A . n A 1 289 LYS 289 290 290 LYS LYS A . n A 1 290 TRP 290 291 291 TRP TRP A . n A 1 291 ILE 291 292 292 ILE ILE A . n A 1 292 LEU 292 293 293 LEU LEU A . n A 1 293 GLU 293 294 294 GLU GLU A . n A 1 294 VAL 294 295 295 VAL VAL A . n A 1 295 VAL 295 296 296 VAL VAL A . n A 1 296 GLY 296 297 297 GLY GLY A . n A 1 297 LEU 297 298 298 LEU LEU A . n A 1 298 VAL 298 299 299 VAL VAL A . n A 1 299 PRO 299 300 300 PRO PRO A . n A 1 300 ARG 300 301 301 ARG ARG A . n A 1 301 GLY 301 302 ? ? ? A . n A 1 302 SER 302 303 ? ? ? A . n A 1 303 GLY 303 304 ? ? ? A . n A 1 304 HIS 304 305 ? ? ? A . n A 1 305 HIS 305 306 ? ? ? A . n A 1 306 HIS 306 307 ? ? ? A . n A 1 307 HIS 307 308 ? ? ? A . n A 1 308 HIS 308 309 ? ? ? A . n A 1 309 HIS 309 310 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 881 881 PO4 PO4 A . C 2 PO4 1 882 882 PO4 PO4 A . D 2 PO4 1 883 883 PO4 PO4 A . E 2 PO4 1 884 884 PO4 PO4 A . F 2 PO4 1 888 888 PO4 PO4 A . G 3 PC 1 900 900 PC PC A . H 4 NA 1 903 903 NA NA A . I 4 NA 1 904 904 NA NA A . J 4 NA 1 905 905 NA NA A . K 3 PC 1 990 990 PC PC A . L 3 PC 1 991 991 PC PC A . M 3 PC 1 992 992 PC PC A . N 5 HOH 1 2001 2001 HOH HOH A . N 5 HOH 2 2002 2002 HOH HOH A . N 5 HOH 3 2003 2003 HOH HOH A . N 5 HOH 4 2007 2007 HOH HOH A . N 5 HOH 5 2009 2009 HOH HOH A . N 5 HOH 6 2012 2012 HOH HOH A . N 5 HOH 7 2013 2013 HOH HOH A . N 5 HOH 8 2014 2014 HOH HOH A . N 5 HOH 9 2016 2016 HOH HOH A . N 5 HOH 10 2019 2019 HOH HOH A . N 5 HOH 11 2021 2021 HOH HOH A . N 5 HOH 12 2022 2022 HOH HOH A . N 5 HOH 13 2025 2025 HOH HOH A . N 5 HOH 14 2026 2026 HOH HOH A . N 5 HOH 15 2028 2028 HOH HOH A . N 5 HOH 16 2029 2029 HOH HOH A . N 5 HOH 17 2031 2031 HOH HOH A . N 5 HOH 18 2034 2034 HOH HOH A . N 5 HOH 19 2035 2035 HOH HOH A . N 5 HOH 20 2038 2038 HOH HOH A . N 5 HOH 21 2039 2039 HOH HOH A . N 5 HOH 22 2041 2041 HOH HOH A . N 5 HOH 23 2047 2047 HOH HOH A . N 5 HOH 24 2048 2048 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 43 A MSE 44 ? MET SELENOMETHIONINE 2 A MSE 89 A MSE 90 ? MET SELENOMETHIONINE 3 A MSE 129 A MSE 130 ? MET SELENOMETHIONINE 4 A MSE 178 A MSE 179 ? MET SELENOMETHIONINE 5 A MSE 216 A MSE 217 ? MET SELENOMETHIONINE 6 A MSE 261 A MSE 262 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-19 2 'Structure model' 1 1 2012-10-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 36.9913 10.9084 15.2861 -0.1330 -0.4334 0.3484 0.0349 -0.1579 -0.2936 12.8321 1.2612 0.0000 2.4157 -0.1397 -2.0132 -0.2110 0.0907 -0.2162 0.1033 0.3763 -1.6083 0.0050 0.6495 -0.1653 'X-RAY DIFFRACTION' 2 ? refined 58.6132 21.7952 4.3616 -0.3839 -0.0269 0.6352 -0.0919 0.0744 -0.4529 -0.1155 0.6059 0.0000 0.4914 0.3796 -1.5738 -0.2287 0.2949 0.0611 -0.0399 0.1010 -0.5392 0.2048 -0.1144 0.1277 'X-RAY DIFFRACTION' 3 ? refined 30.7287 13.9571 10.8810 -0.4242 -0.2475 -0.0009 0.1324 -0.1354 -0.1105 6.7762 8.2472 9.0139 3.9792 2.2074 6.8256 -0.1156 0.9431 -0.3629 -0.0787 0.1539 -1.2146 -0.0118 -0.5225 -0.0383 'X-RAY DIFFRACTION' 4 ? refined 52.5122 16.3965 12.8242 -0.2545 -0.2229 0.6399 0.2270 -0.0545 -0.2960 6.8949 0.3760 2.9648 -0.0401 -1.0641 1.7531 -0.2212 0.2427 -0.3622 -0.2610 -0.2602 -0.0240 0.1980 0.1932 0.4815 'X-RAY DIFFRACTION' 5 ? refined 63.7172 9.8669 10.4798 -0.1918 0.3413 0.5471 0.4502 0.2971 0.1111 -2.7600 13.4924 1.4581 0.7430 -1.9525 -5.3695 0.0384 0.0624 -0.3023 -0.1359 0.3202 0.3283 -0.1374 0.1293 -0.3586 'X-RAY DIFFRACTION' 6 ? refined 42.4520 6.4808 19.0233 0.3011 -0.1409 0.7294 0.1539 -0.4426 -0.1453 -2.9285 6.6883 0.3673 3.2837 3.2147 6.3271 0.0566 0.0516 -0.0405 -0.1242 -0.1538 -0.0281 0.2490 -0.0337 0.0973 'X-RAY DIFFRACTION' 7 ? refined 5.2741 14.3894 9.0919 0.0835 -0.1338 -0.2682 0.0443 -0.0390 -0.1257 1.7520 2.7107 5.6395 -0.1445 1.5569 0.1655 -0.0354 -0.1959 0.3384 0.4458 -0.3301 0.0561 -0.2518 -0.6024 0.3655 'X-RAY DIFFRACTION' 8 ? refined 4.3686 22.3767 -2.2726 0.0875 -0.1687 -0.2662 0.1041 -0.1652 -0.0214 2.6507 6.8664 5.9942 1.9963 2.4964 0.5138 -0.2072 0.1756 0.7188 -0.0906 -0.1854 -0.2316 -1.2995 -0.3317 0.3926 'X-RAY DIFFRACTION' 9 ? refined 11.8308 17.9678 13.1992 0.2976 -0.1690 -0.1189 0.0114 -0.1044 -0.0426 2.2390 0.1405 0.1119 -1.9796 0.4614 0.0837 -0.1670 0.0906 0.2998 0.2492 -0.1408 -0.0099 0.1744 -0.2178 0.3078 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 6:22' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 23:48' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 49:75' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 76:131' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 132:147' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 148:154' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 155:267' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 268:286' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 287:992' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.11.1 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 283 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O3 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 PC _pdbx_validate_close_contact.auth_seq_id_2 992 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A GLU 22 ? ? CB A GLU 22 ? ? CG A GLU 22 ? ? 129.04 113.40 15.64 2.20 N 2 1 CB A GLU 22 ? ? CG A GLU 22 ? ? CD A GLU 22 ? ? 130.80 114.20 16.60 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 7 ? ? -64.02 89.68 2 1 THR A 32 ? ? -98.45 -148.09 3 1 ILE A 133 ? ? -93.69 -62.96 4 1 ASP A 134 ? ? 81.74 153.12 5 1 GLU A 135 ? ? -163.21 118.09 6 1 LYS A 165 ? ? -126.95 -60.10 7 1 TRP A 206 ? ? -36.67 -36.77 8 1 ASN A 248 ? ? -78.72 26.62 9 1 ASP A 275 ? ? -68.11 92.05 10 1 ASN A 280 ? ? -140.67 38.01 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 2 ? A SER 1 2 1 Y 1 A ALA 3 ? A ALA 2 3 1 Y 1 A LYS 4 ? A LYS 3 4 1 Y 1 A ALA 5 ? A ALA 4 5 1 Y 1 A GLY 302 ? A GLY 301 6 1 Y 1 A SER 303 ? A SER 302 7 1 Y 1 A GLY 304 ? A GLY 303 8 1 Y 1 A HIS 305 ? A HIS 304 9 1 Y 1 A HIS 306 ? A HIS 305 10 1 Y 1 A HIS 307 ? A HIS 306 11 1 Y 1 A HIS 308 ? A HIS 307 12 1 Y 1 A HIS 309 ? A HIS 308 13 1 Y 1 A HIS 310 ? A HIS 309 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 PHOSPHOCHOLINE PC 4 'SODIUM ION' NA 5 water HOH #