HEADER VIRUS 08-AUG-11 3ZX9 TITLE CRYO-EM RECONSTRUCTION OF NATIVE AND EXPANDED TURNIP CRINKLE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: COAT PROTEIN, P38 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TURNIP CRINKLE VIRUS; SOURCE 3 ORGANISM_COMMON: TCV; SOURCE 4 ORGANISM_TAXID: 11988; SOURCE 5 STRAIN: M KEYWDS VIRUS, GENOMIC RNA STRUCTURE, GENOME UNCOATING, SSRNA VIRUS, KEYWDS 2 ICOSAHEDRAL EXPDTA ELECTRON MICROSCOPY AUTHOR S.E.BAKKER,J.ROBOTTOM,A.R.PEARSON,P.G.STOCKLEY,N.A.RANSON REVDAT 3 08-MAY-24 3ZX9 1 REMARK REVDAT 2 03-OCT-18 3ZX9 1 REMARK REVDAT 1 18-JUL-12 3ZX9 0 JRNL AUTH S.E.BAKKER,R.J.FORD,A.M.BARKER,J.ROBOTTOM,K.SAUNDERS, JRNL AUTH 2 A.R.PEARSON,N.A.RANSON,P.G.STOCKLEY JRNL TITL ISOLATION OF AN ASYMMETRIC RNA UNCOATING INTERMEDIATE FOR A JRNL TITL 2 SINGLE-STRANDED RNA PLANT VIRUS. JRNL REF J.MOL.BIOL. V. 417 65 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22306464 JRNL DOI 10.1016/J.JMB.2012.01.017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.HOGLE,A.MAEDA,S.C.HARRISON REMARK 1 TITL STRUCTURE AND ASSEMBLY OF TURNIP CRINKLE VIRUS. I. X-RAY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STRUCTURE ANALYSIS AT 3.2 A RESOLUTION. REMARK 1 REF J.MOL.BIOL. V. 191 625 1986 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 3806676 REMARK 1 DOI 10.1016/0022-2836(86)90450-X REMARK 2 REMARK 2 RESOLUTION. 17.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--RIGID-BODY FIT REFINEMENT PROTOCOL--X REMARK 3 -RAY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.000 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 17.00 REMARK 3 NUMBER OF PARTICLES : 5121 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -1864.(DEPOSITION ID: 7818). REMARK 4 REMARK 4 3ZX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290047121. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE CRYO EM REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TURNIP CRINKLE VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.00 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, TEMPERATURE- 77, REMARK 245 INSTRUMENT- DOUBLE SIDED REMARK 245 AUTOMATED BLOTTER AND PLUNGER, REMARK 245 METHOD- BLOT 1.6 SECONDS BEFORE REMARK 245 PLUNGING, REMARK 245 SAMPLE BUFFER : 100 MM TRIS PH 8.5, 5 MM EDTA REMARK 245 PH : 8.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 52911 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 VAL A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 PHE A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 GLN A 16 REMARK 465 TRP A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 LYS A 20 REMARK 465 TRP A 21 REMARK 465 GLN A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 GLY A 25 REMARK 465 TRP A 26 REMARK 465 SER A 27 REMARK 465 THR A 28 REMARK 465 LEU A 29 REMARK 465 THR A 30 REMARK 465 SER A 31 REMARK 465 ARG A 32 REMARK 465 GLN A 33 REMARK 465 LYS A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 ALA A 37 REMARK 465 ARG A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 MET A 41 REMARK 465 GLY A 42 REMARK 465 ILE A 43 REMARK 465 LYS A 44 REMARK 465 LEU A 45 REMARK 465 SER A 46 REMARK 465 PRO A 47 REMARK 465 VAL A 48 REMARK 465 ALA A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 VAL A 52 REMARK 465 GLN A 53 REMARK 465 LYS A 54 REMARK 465 VAL A 55 REMARK 465 THR A 56 REMARK 465 ARG A 57 REMARK 465 LEU A 58 REMARK 465 SER A 59 REMARK 465 ALA A 60 REMARK 465 PRO A 61 REMARK 465 VAL A 62 REMARK 465 ALA A 63 REMARK 465 LEU A 64 REMARK 465 ALA A 65 REMARK 465 TYR A 66 REMARK 465 ARG A 67 REMARK 465 GLU A 68 REMARK 465 VAL A 69 REMARK 465 SER A 70 REMARK 465 THR A 71 REMARK 465 GLN A 72 REMARK 465 PRO A 73 REMARK 465 ARG A 74 REMARK 465 VAL A 75 REMARK 465 SER A 76 REMARK 465 THR A 77 REMARK 465 ALA A 78 REMARK 465 ARG A 79 REMARK 465 ASP A 80 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 ASP B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 VAL B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 PHE B 10 REMARK 465 ALA B 11 REMARK 465 SER B 12 REMARK 465 ASP B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 GLN B 16 REMARK 465 TRP B 17 REMARK 465 ALA B 18 REMARK 465 ILE B 19 REMARK 465 LYS B 20 REMARK 465 TRP B 21 REMARK 465 GLN B 22 REMARK 465 LYS B 23 REMARK 465 LYS B 24 REMARK 465 GLY B 25 REMARK 465 TRP B 26 REMARK 465 SER B 27 REMARK 465 THR B 28 REMARK 465 LEU B 29 REMARK 465 THR B 30 REMARK 465 SER B 31 REMARK 465 ARG B 32 REMARK 465 GLN B 33 REMARK 465 LYS B 34 REMARK 465 GLN B 35 REMARK 465 THR B 36 REMARK 465 ALA B 37 REMARK 465 ARG B 38 REMARK 465 ALA B 39 REMARK 465 ALA B 40 REMARK 465 MET B 41 REMARK 465 GLY B 42 REMARK 465 ILE B 43 REMARK 465 LYS B 44 REMARK 465 LEU B 45 REMARK 465 SER B 46 REMARK 465 PRO B 47 REMARK 465 VAL B 48 REMARK 465 ALA B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 VAL B 52 REMARK 465 GLN B 53 REMARK 465 LYS B 54 REMARK 465 VAL B 55 REMARK 465 THR B 56 REMARK 465 ARG B 57 REMARK 465 LEU B 58 REMARK 465 SER B 59 REMARK 465 ALA B 60 REMARK 465 PRO B 61 REMARK 465 VAL B 62 REMARK 465 ALA B 63 REMARK 465 LEU B 64 REMARK 465 ALA B 65 REMARK 465 TYR B 66 REMARK 465 ARG B 67 REMARK 465 GLU B 68 REMARK 465 VAL B 69 REMARK 465 SER B 70 REMARK 465 THR B 71 REMARK 465 GLN B 72 REMARK 465 PRO B 73 REMARK 465 ARG B 74 REMARK 465 VAL B 75 REMARK 465 SER B 76 REMARK 465 THR B 77 REMARK 465 ALA B 78 REMARK 465 ARG B 79 REMARK 465 ASP B 80 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ASN C 3 REMARK 465 ASP C 4 REMARK 465 PRO C 5 REMARK 465 ARG C 6 REMARK 465 VAL C 7 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 PHE C 10 REMARK 465 ALA C 11 REMARK 465 SER C 12 REMARK 465 ASP C 13 REMARK 465 GLY C 14 REMARK 465 ALA C 15 REMARK 465 GLN C 16 REMARK 465 TRP C 17 REMARK 465 ALA C 18 REMARK 465 ILE C 19 REMARK 465 LYS C 20 REMARK 465 TRP C 21 REMARK 465 GLN C 22 REMARK 465 LYS C 23 REMARK 465 LYS C 24 REMARK 465 GLY C 25 REMARK 465 TRP C 26 REMARK 465 SER C 27 REMARK 465 THR C 28 REMARK 465 LEU C 29 REMARK 465 THR C 30 REMARK 465 SER C 31 REMARK 465 ARG C 32 REMARK 465 GLN C 33 REMARK 465 LYS C 34 REMARK 465 GLN C 35 REMARK 465 THR C 36 REMARK 465 ALA C 37 REMARK 465 ARG C 38 REMARK 465 ALA C 39 REMARK 465 ALA C 40 REMARK 465 MET C 41 REMARK 465 GLY C 42 REMARK 465 ILE C 43 REMARK 465 LYS C 44 REMARK 465 LEU C 45 REMARK 465 SER C 46 REMARK 465 PRO C 47 REMARK 465 VAL C 48 REMARK 465 ALA C 49 REMARK 465 GLN C 50 REMARK 465 PRO C 51 REMARK 465 VAL C 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 219 CB CG CD OE1 NE2 REMARK 470 GLN A 249 NE2 REMARK 470 GLN B 219 CB CG CD OE1 NE2 REMARK 470 GLN B 249 NE2 REMARK 470 GLN C 53 CA CB CG CD OE1 NE2 REMARK 470 GLN C 219 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ALA C 248 N LEU C 349 0.29 REMARK 500 OD2 ASP A 194 NZ LYS A 239 0.51 REMARK 500 OD2 ASP B 194 NZ LYS B 239 0.51 REMARK 500 OD2 ASP C 194 NZ LYS C 239 0.51 REMARK 500 CB ALA B 248 CH2 TRP B 265 0.57 REMARK 500 C ILE C 201 O LEU C 281 0.72 REMARK 500 OG SER C 111 NE ARG C 350 0.72 REMARK 500 CG PRO A 113 NE ARG A 329 0.73 REMARK 500 CA ILE C 201 C LEU C 281 0.74 REMARK 500 CD PRO A 113 NH1 ARG A 329 0.75 REMARK 500 N ALA C 248 CB LEU C 349 0.76 REMARK 500 CA ALA C 248 CB LEU C 349 0.83 REMARK 500 CD PRO A 113 CZ ARG A 329 0.84 REMARK 500 CD1 ILE B 120 NH2 ARG B 350 0.86 REMARK 500 CB ALA B 248 CZ3 TRP B 265 0.87 REMARK 500 CG1 ILE C 201 CA LEU C 281 0.87 REMARK 500 OE1 GLU C 112 CA GLY C 284 0.93 REMARK 500 O ASP C 199 O SER C 264 0.93 REMARK 500 O ILE C 201 N SER C 202 0.94 REMARK 500 O ILE A 201 N SER A 202 0.94 REMARK 500 O ILE B 201 N SER B 202 0.94 REMARK 500 N SER C 202 O LEU C 281 0.99 REMARK 500 N ALA C 248 CG LEU C 349 1.00 REMARK 500 OG SER B 266 O HIS B 279 1.01 REMARK 500 OG SER A 266 O HIS A 279 1.01 REMARK 500 OG SER C 266 O HIS C 279 1.01 REMARK 500 CB SER C 246 CD2 LEU C 349 1.03 REMARK 500 NE ARG B 135 OE2 GLU B 233 1.04 REMARK 500 NE ARG C 135 OE2 GLU C 233 1.04 REMARK 500 NE ARG A 135 OE2 GLU A 233 1.04 REMARK 500 CD PRO C 110 OH TYR C 129 1.09 REMARK 500 CD PRO A 110 OH TYR A 129 1.09 REMARK 500 CD PRO B 110 OH TYR B 129 1.09 REMARK 500 CB PRO A 113 NE ARG A 329 1.13 REMARK 500 CA ALA C 248 CA LEU C 349 1.14 REMARK 500 CG PRO A 113 CZ ARG A 329 1.17 REMARK 500 N PRO A 113 CZ ARG A 329 1.17 REMARK 500 CA ALA B 248 CZ2 TRP B 265 1.19 REMARK 500 CG1 ILE C 201 CB LEU C 281 1.20 REMARK 500 CA ILE C 201 N GLY C 282 1.27 REMARK 500 C ALA C 248 CA LEU C 349 1.29 REMARK 500 CG PRO A 110 CE2 TYR A 129 1.29 REMARK 500 CG PRO C 110 CE2 TYR C 129 1.29 REMARK 500 CG PRO B 110 CE2 TYR B 129 1.29 REMARK 500 CB ILE C 201 CA LEU C 281 1.29 REMARK 500 O ALA C 248 N LEU C 349 1.30 REMARK 500 CB SER C 111 CZ ARG C 350 1.31 REMARK 500 N PRO A 113 NH1 ARG A 329 1.31 REMARK 500 CB ILE C 201 CB LEU C 281 1.33 REMARK 500 OG SER A 306 O LYS A 325 1.34 REMARK 500 REMARK 500 THIS ENTRY HAS 420 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 90 CA ILE A 90 C 0.163 REMARK 500 THR A 91 N THR A 91 CA 0.185 REMARK 500 LEU A 93 N LEU A 93 CA -0.822 REMARK 500 LYS A 121 CE LYS A 121 NZ 0.302 REMARK 500 SER A 133 CB SER A 133 OG 0.387 REMARK 500 SER A 139 C PRO A 140 N -0.219 REMARK 500 PRO A 140 CA PRO A 140 CB -0.123 REMARK 500 PRO A 140 CD PRO A 140 N -0.153 REMARK 500 LYS A 149 CD LYS A 149 CE 0.485 REMARK 500 PRO A 163 N PRO A 163 CA -0.102 REMARK 500 CYS A 175 C VAL A 176 N -0.147 REMARK 500 SER A 177 C SER A 178 N -0.293 REMARK 500 GLY A 200 C ILE A 201 N -0.216 REMARK 500 ILE A 201 C SER A 202 N -0.974 REMARK 500 GLY A 259 CA GLY A 259 C 0.102 REMARK 500 PRO A 260 C ARG A 261 N -0.185 REMARK 500 LEU A 288 C THR A 289 N -0.399 REMARK 500 LEU A 290 C PHE A 291 N 0.174 REMARK 500 VAL A 297 C SER A 298 N -0.332 REMARK 500 SER A 298 C GLY A 299 N -0.174 REMARK 500 GLY A 299 N GLY A 299 CA -0.135 REMARK 500 GLY A 299 CA GLY A 299 C -0.136 REMARK 500 GLY A 299 C LEU A 300 N -0.161 REMARK 500 LEU A 300 N LEU A 300 CA -0.151 REMARK 500 ALA A 303 C ASP A 304 N 0.161 REMARK 500 PHE A 308 C SER A 309 N -0.221 REMARK 500 ALA A 315 C ALA A 316 N -0.199 REMARK 500 VAL A 319 C GLN A 320 N 0.276 REMARK 500 GLY A 323 C VAL A 324 N -0.176 REMARK 500 GLY A 330 C GLN A 331 N 0.163 REMARK 500 ILE B 90 CA ILE B 90 C 0.163 REMARK 500 THR B 91 N THR B 91 CA 0.186 REMARK 500 LEU B 93 N LEU B 93 CA -0.822 REMARK 500 LYS B 121 CE LYS B 121 NZ 0.302 REMARK 500 SER B 133 CB SER B 133 OG 0.388 REMARK 500 SER B 139 C PRO B 140 N -0.220 REMARK 500 PRO B 140 CA PRO B 140 CB -0.123 REMARK 500 PRO B 140 CD PRO B 140 N -0.152 REMARK 500 LYS B 149 CD LYS B 149 CE 0.487 REMARK 500 PRO B 163 N PRO B 163 CA -0.103 REMARK 500 CYS B 175 C VAL B 176 N -0.146 REMARK 500 SER B 177 C SER B 178 N -0.295 REMARK 500 GLY B 200 C ILE B 201 N -0.215 REMARK 500 ILE B 201 C SER B 202 N -0.974 REMARK 500 GLY B 259 CA GLY B 259 C 0.104 REMARK 500 PRO B 260 C ARG B 261 N -0.184 REMARK 500 LEU B 288 C THR B 289 N -0.397 REMARK 500 LEU B 290 C PHE B 291 N 0.175 REMARK 500 VAL B 297 C SER B 298 N -0.332 REMARK 500 SER B 298 C GLY B 299 N -0.175 REMARK 500 REMARK 500 THIS ENTRY HAS 101 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ILE A 90 O - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 THR A 91 N - CA - CB ANGL. DEV. = 13.3 DEGREES REMARK 500 LEU A 93 N - CA - C ANGL. DEV. = -34.1 DEGREES REMARK 500 GLU A 100 O - C - N ANGL. DEV. = -17.7 DEGREES REMARK 500 LYS A 102 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR A 129 CA - C - N ANGL. DEV. = -21.1 DEGREES REMARK 500 TYR A 129 O - C - N ANGL. DEV. = 20.6 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 PRO A 140 C - N - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO A 140 CA - N - CD ANGL. DEV. = 12.9 DEGREES REMARK 500 PRO A 140 N - CA - CB ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO A 140 N - CD - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 MET A 141 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 PRO A 163 O - C - N ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 165 O - C - N ANGL. DEV. = 11.1 DEGREES REMARK 500 CYS A 175 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 CYS A 175 CA - CB - SG ANGL. DEV. = -14.9 DEGREES REMARK 500 VAL A 176 C - N - CA ANGL. DEV. = -20.7 DEGREES REMARK 500 VAL A 176 O - C - N ANGL. DEV. = 11.5 DEGREES REMARK 500 ASP A 191 O - C - N ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 199 O - C - N ANGL. DEV. = 10.9 DEGREES REMARK 500 GLY A 200 CA - C - N ANGL. DEV. = -21.5 DEGREES REMARK 500 GLY A 200 O - C - N ANGL. DEV. = 19.9 DEGREES REMARK 500 ILE A 201 C - N - CA ANGL. DEV. = 24.2 DEGREES REMARK 500 ILE A 201 CA - C - N ANGL. DEV. = 27.2 DEGREES REMARK 500 ILE A 201 O - C - N ANGL. DEV. = -94.4 DEGREES REMARK 500 SER A 202 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 SER A 202 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 SER A 202 O - C - N ANGL. DEV. = 11.1 DEGREES REMARK 500 ASP A 203 O - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 MET A 214 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLY A 273 CA - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 GLY A 273 O - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 TRP A 274 C - N - CA ANGL. DEV. = -18.9 DEGREES REMARK 500 TRP A 274 O - C - N ANGL. DEV. = 11.6 DEGREES REMARK 500 GLU A 275 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 GLU A 275 N - CA - C ANGL. DEV. = -23.0 DEGREES REMARK 500 CYS A 278 CA - CB - SG ANGL. DEV. = -15.8 DEGREES REMARK 500 LEU A 288 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 LEU A 290 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 LEU A 290 CA - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 LEU A 290 O - C - N ANGL. DEV. = 19.8 DEGREES REMARK 500 PHE A 291 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 250 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 84 -168.34 -161.80 REMARK 500 SER A 87 82.02 130.44 REMARK 500 ILE A 90 39.00 -57.14 REMARK 500 THR A 91 152.89 70.25 REMARK 500 LEU A 93 -163.84 -109.33 REMARK 500 LYS A 94 115.03 -167.94 REMARK 500 LYS A 95 -153.97 21.03 REMARK 500 ASN A 96 10.51 158.58 REMARK 500 THR A 97 49.40 -30.04 REMARK 500 PRO A 101 -161.97 -55.24 REMARK 500 LYS A 102 121.39 -172.58 REMARK 500 THR A 105 117.87 -5.04 REMARK 500 GLU A 112 66.12 -160.03 REMARK 500 THR A 115 15.84 -175.97 REMARK 500 PHE A 116 98.52 173.34 REMARK 500 LEU A 119 -7.29 163.62 REMARK 500 GLN A 125 -0.16 -140.27 REMARK 500 GLU A 127 94.64 -170.64 REMARK 500 LYS A 128 149.11 140.07 REMARK 500 ARG A 130 -82.83 -94.36 REMARK 500 PHE A 131 133.88 68.82 REMARK 500 THR A 132 -20.92 -146.35 REMARK 500 LEU A 134 119.04 179.17 REMARK 500 SER A 139 154.60 -40.00 REMARK 500 THR A 145 6.20 -58.26 REMARK 500 ALA A 151 154.33 -34.53 REMARK 500 LEU A 152 94.21 179.26 REMARK 500 ARG A 156 -72.49 -17.42 REMARK 500 ASP A 157 72.69 -51.44 REMARK 500 ALA A 158 14.34 -59.16 REMARK 500 LYS A 160 152.96 156.73 REMARK 500 PRO A 163 -156.85 -67.68 REMARK 500 LEU A 166 -87.04 -33.54 REMARK 500 ALA A 167 -45.75 -24.27 REMARK 500 TYR A 170 24.17 -75.33 REMARK 500 GLU A 173 -136.59 -12.59 REMARK 500 CYS A 175 -0.47 88.42 REMARK 500 SER A 192 51.29 -142.11 REMARK 500 ASP A 199 32.91 -89.25 REMARK 500 ILE A 201 -49.60 -29.08 REMARK 500 SER A 202 -140.56 11.18 REMARK 500 LYS A 205 -33.40 -166.28 REMARK 500 PHE A 209 -84.59 -43.40 REMARK 500 GLN A 219 -30.12 -151.47 REMARK 500 ALA A 225 172.86 174.61 REMARK 500 GLN A 226 66.13 -108.95 REMARK 500 LEU A 227 -106.65 -6.65 REMARK 500 ARG A 231 -150.95 -143.80 REMARK 500 ASN A 240 119.57 42.21 REMARK 500 THR A 242 -124.77 -121.63 REMARK 500 REMARK 500 THIS ENTRY HAS 242 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 92 LEU A 93 -133.28 REMARK 500 THR B 92 LEU B 93 -133.33 REMARK 500 THR C 92 LEU C 93 -133.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 100 15.60 REMARK 500 SER A 177 13.46 REMARK 500 ILE A 201 -152.71 REMARK 500 PRO A 260 -10.90 REMARK 500 ASP A 307 -11.73 REMARK 500 GLY A 330 10.51 REMARK 500 MET A 335 -23.53 REMARK 500 GLU B 100 15.62 REMARK 500 SER B 177 13.37 REMARK 500 ILE B 201 -152.92 REMARK 500 PRO B 260 -10.87 REMARK 500 ASP B 307 -11.72 REMARK 500 GLY B 330 10.55 REMARK 500 MET B 335 -23.62 REMARK 500 SER C 59 13.62 REMARK 500 VAL C 69 23.42 REMARK 500 GLU C 100 15.53 REMARK 500 SER C 177 13.39 REMARK 500 ILE C 201 -153.07 REMARK 500 PRO C 260 -10.80 REMARK 500 ASP C 307 -11.73 REMARK 500 GLY C 330 10.57 REMARK 500 MET C 335 -23.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZXA RELATED DB: PDB REMARK 900 STRUCTURE AND ASSEMBLY OF TURNIP CRINKLE VIRUS I. X- RAY REMARK 900 CRYSTALLOGRAPHIC STRUCTURE ANALYSIS AT 3.2 A RESOLUTION REMARK 900 RELATED ID: 3ZX8 RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF NATIVE AND EXPANDED TURNIP CRINKLE VIRUS REMARK 900 RELATED ID: EMD-1863 RELATED DB: EMDB REMARK 900 CRYO-EM RECONSTRUCTION OF NATIVE AND EXPANDED TURNIP CRINKLE VIRUS REMARK 900 RELATED ID: EMD-1864 RELATED DB: EMDB REMARK 900 CRYO-EM RECONSTRUCTION OF NATIVE AND EXPANDED TURNIP CRINKLE VIRUS REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN CHAIN C RESIDUES 1-52 DISORDERED AND NOT OBSERVED. IN REMARK 999 CHAINS A AND B RESIDUES 1-80 DISORDERED AND NOT OBSERVED. DBREF 3ZX9 A 1 221 UNP P06663 CAPSD_TCV 1 221 DBREF 3ZX9 A 225 246 UNP P06663 CAPSD_TCV 225 246 DBREF 3ZX9 A 248 351 UNP P06663 CAPSD_TCV 248 351 DBREF 3ZX9 B 1 221 UNP P06663 CAPSD_TCV 1 221 DBREF 3ZX9 B 225 246 UNP P06663 CAPSD_TCV 225 246 DBREF 3ZX9 B 248 351 UNP P06663 CAPSD_TCV 248 351 DBREF 3ZX9 C 1 221 UNP P06663 CAPSD_TCV 1 221 DBREF 3ZX9 C 225 246 UNP P06663 CAPSD_TCV 225 246 DBREF 3ZX9 C 248 351 UNP P06663 CAPSD_TCV 248 351 SEQADV 3ZX9 A UNP P06663 ASN 222 DELETION SEQADV 3ZX9 A UNP P06663 ASP 223 DELETION SEQADV 3ZX9 A UNP P06663 ALA 224 DELETION SEQADV 3ZX9 A UNP P06663 ASP 247 DELETION SEQADV 3ZX9 TRP A 346 UNP P06663 LEU 346 VARIANT SEQADV 3ZX9 B UNP P06663 ASN 222 DELETION SEQADV 3ZX9 B UNP P06663 ASP 223 DELETION SEQADV 3ZX9 B UNP P06663 ALA 224 DELETION SEQADV 3ZX9 B UNP P06663 ASP 247 DELETION SEQADV 3ZX9 TRP B 346 UNP P06663 LEU 346 VARIANT SEQADV 3ZX9 C UNP P06663 ASN 222 DELETION SEQADV 3ZX9 C UNP P06663 ASP 223 DELETION SEQADV 3ZX9 C UNP P06663 ALA 224 DELETION SEQADV 3ZX9 C UNP P06663 ASP 247 DELETION SEQADV 3ZX9 TRP C 346 UNP P06663 LEU 346 VARIANT SEQRES 1 A 347 MET GLU ASN ASP PRO ARG VAL ARG LYS PHE ALA SER ASP SEQRES 2 A 347 GLY ALA GLN TRP ALA ILE LYS TRP GLN LYS LYS GLY TRP SEQRES 3 A 347 SER THR LEU THR SER ARG GLN LYS GLN THR ALA ARG ALA SEQRES 4 A 347 ALA MET GLY ILE LYS LEU SER PRO VAL ALA GLN PRO VAL SEQRES 5 A 347 GLN LYS VAL THR ARG LEU SER ALA PRO VAL ALA LEU ALA SEQRES 6 A 347 TYR ARG GLU VAL SER THR GLN PRO ARG VAL SER THR ALA SEQRES 7 A 347 ARG ASP GLY ILE THR ARG SER GLY SER GLU LEU ILE THR SEQRES 8 A 347 THR LEU LYS LYS ASN THR ASP THR GLU PRO LYS TYR THR SEQRES 9 A 347 THR ALA VAL LEU ASN PRO SER GLU PRO GLY THR PHE ASN SEQRES 10 A 347 GLN LEU ILE LYS GLU ALA ALA GLN TYR GLU LYS TYR ARG SEQRES 11 A 347 PHE THR SER LEU ARG PHE ARG TYR SER PRO MET SER PRO SEQRES 12 A 347 SER THR THR GLY GLY LYS VAL ALA LEU ALA PHE ASP ARG SEQRES 13 A 347 ASP ALA ALA LYS PRO PRO PRO ASN ASP LEU ALA SER LEU SEQRES 14 A 347 TYR ASN ILE GLU GLY CYS VAL SER SER VAL PRO TRP THR SEQRES 15 A 347 GLY PHE ILE LEU THR VAL PRO THR ASP SER THR ASP ARG SEQRES 16 A 347 PHE VAL ALA ASP GLY ILE SER ASP PRO LYS LEU VAL ASP SEQRES 17 A 347 PHE GLY LYS LEU ILE MET ALA THR TYR GLY GLN GLY ALA SEQRES 18 A 347 ALA GLN LEU GLY GLU VAL ARG VAL GLU TYR THR VAL GLN SEQRES 19 A 347 LEU LYS ASN ARG THR GLY SER THR SER ALA GLN ILE GLY SEQRES 20 A 347 ASP PHE ALA GLY VAL LYS ASP GLY PRO ARG LEU VAL SER SEQRES 21 A 347 TRP SER LYS THR LYS GLY THR ALA GLY TRP GLU HIS ASP SEQRES 22 A 347 CYS HIS PHE LEU GLY THR GLY ASN PHE SER LEU THR LEU SEQRES 23 A 347 PHE TYR GLU LYS ALA PRO VAL SER GLY LEU GLU ASN ALA SEQRES 24 A 347 ASP ALA SER ASP PHE SER VAL LEU GLY GLU ALA ALA ALA SEQRES 25 A 347 GLY SER VAL GLN TRP ALA GLY VAL LYS VAL ALA GLU ARG SEQRES 26 A 347 GLY GLN GLY VAL LYS MET VAL THR THR GLU GLU GLN PRO SEQRES 27 A 347 LYS GLY LYS TRP GLN ALA LEU ARG ILE SEQRES 1 B 347 MET GLU ASN ASP PRO ARG VAL ARG LYS PHE ALA SER ASP SEQRES 2 B 347 GLY ALA GLN TRP ALA ILE LYS TRP GLN LYS LYS GLY TRP SEQRES 3 B 347 SER THR LEU THR SER ARG GLN LYS GLN THR ALA ARG ALA SEQRES 4 B 347 ALA MET GLY ILE LYS LEU SER PRO VAL ALA GLN PRO VAL SEQRES 5 B 347 GLN LYS VAL THR ARG LEU SER ALA PRO VAL ALA LEU ALA SEQRES 6 B 347 TYR ARG GLU VAL SER THR GLN PRO ARG VAL SER THR ALA SEQRES 7 B 347 ARG ASP GLY ILE THR ARG SER GLY SER GLU LEU ILE THR SEQRES 8 B 347 THR LEU LYS LYS ASN THR ASP THR GLU PRO LYS TYR THR SEQRES 9 B 347 THR ALA VAL LEU ASN PRO SER GLU PRO GLY THR PHE ASN SEQRES 10 B 347 GLN LEU ILE LYS GLU ALA ALA GLN TYR GLU LYS TYR ARG SEQRES 11 B 347 PHE THR SER LEU ARG PHE ARG TYR SER PRO MET SER PRO SEQRES 12 B 347 SER THR THR GLY GLY LYS VAL ALA LEU ALA PHE ASP ARG SEQRES 13 B 347 ASP ALA ALA LYS PRO PRO PRO ASN ASP LEU ALA SER LEU SEQRES 14 B 347 TYR ASN ILE GLU GLY CYS VAL SER SER VAL PRO TRP THR SEQRES 15 B 347 GLY PHE ILE LEU THR VAL PRO THR ASP SER THR ASP ARG SEQRES 16 B 347 PHE VAL ALA ASP GLY ILE SER ASP PRO LYS LEU VAL ASP SEQRES 17 B 347 PHE GLY LYS LEU ILE MET ALA THR TYR GLY GLN GLY ALA SEQRES 18 B 347 ALA GLN LEU GLY GLU VAL ARG VAL GLU TYR THR VAL GLN SEQRES 19 B 347 LEU LYS ASN ARG THR GLY SER THR SER ALA GLN ILE GLY SEQRES 20 B 347 ASP PHE ALA GLY VAL LYS ASP GLY PRO ARG LEU VAL SER SEQRES 21 B 347 TRP SER LYS THR LYS GLY THR ALA GLY TRP GLU HIS ASP SEQRES 22 B 347 CYS HIS PHE LEU GLY THR GLY ASN PHE SER LEU THR LEU SEQRES 23 B 347 PHE TYR GLU LYS ALA PRO VAL SER GLY LEU GLU ASN ALA SEQRES 24 B 347 ASP ALA SER ASP PHE SER VAL LEU GLY GLU ALA ALA ALA SEQRES 25 B 347 GLY SER VAL GLN TRP ALA GLY VAL LYS VAL ALA GLU ARG SEQRES 26 B 347 GLY GLN GLY VAL LYS MET VAL THR THR GLU GLU GLN PRO SEQRES 27 B 347 LYS GLY LYS TRP GLN ALA LEU ARG ILE SEQRES 1 C 347 MET GLU ASN ASP PRO ARG VAL ARG LYS PHE ALA SER ASP SEQRES 2 C 347 GLY ALA GLN TRP ALA ILE LYS TRP GLN LYS LYS GLY TRP SEQRES 3 C 347 SER THR LEU THR SER ARG GLN LYS GLN THR ALA ARG ALA SEQRES 4 C 347 ALA MET GLY ILE LYS LEU SER PRO VAL ALA GLN PRO VAL SEQRES 5 C 347 GLN LYS VAL THR ARG LEU SER ALA PRO VAL ALA LEU ALA SEQRES 6 C 347 TYR ARG GLU VAL SER THR GLN PRO ARG VAL SER THR ALA SEQRES 7 C 347 ARG ASP GLY ILE THR ARG SER GLY SER GLU LEU ILE THR SEQRES 8 C 347 THR LEU LYS LYS ASN THR ASP THR GLU PRO LYS TYR THR SEQRES 9 C 347 THR ALA VAL LEU ASN PRO SER GLU PRO GLY THR PHE ASN SEQRES 10 C 347 GLN LEU ILE LYS GLU ALA ALA GLN TYR GLU LYS TYR ARG SEQRES 11 C 347 PHE THR SER LEU ARG PHE ARG TYR SER PRO MET SER PRO SEQRES 12 C 347 SER THR THR GLY GLY LYS VAL ALA LEU ALA PHE ASP ARG SEQRES 13 C 347 ASP ALA ALA LYS PRO PRO PRO ASN ASP LEU ALA SER LEU SEQRES 14 C 347 TYR ASN ILE GLU GLY CYS VAL SER SER VAL PRO TRP THR SEQRES 15 C 347 GLY PHE ILE LEU THR VAL PRO THR ASP SER THR ASP ARG SEQRES 16 C 347 PHE VAL ALA ASP GLY ILE SER ASP PRO LYS LEU VAL ASP SEQRES 17 C 347 PHE GLY LYS LEU ILE MET ALA THR TYR GLY GLN GLY ALA SEQRES 18 C 347 ALA GLN LEU GLY GLU VAL ARG VAL GLU TYR THR VAL GLN SEQRES 19 C 347 LEU LYS ASN ARG THR GLY SER THR SER ALA GLN ILE GLY SEQRES 20 C 347 ASP PHE ALA GLY VAL LYS ASP GLY PRO ARG LEU VAL SER SEQRES 21 C 347 TRP SER LYS THR LYS GLY THR ALA GLY TRP GLU HIS ASP SEQRES 22 C 347 CYS HIS PHE LEU GLY THR GLY ASN PHE SER LEU THR LEU SEQRES 23 C 347 PHE TYR GLU LYS ALA PRO VAL SER GLY LEU GLU ASN ALA SEQRES 24 C 347 ASP ALA SER ASP PHE SER VAL LEU GLY GLU ALA ALA ALA SEQRES 25 C 347 GLY SER VAL GLN TRP ALA GLY VAL LYS VAL ALA GLU ARG SEQRES 26 C 347 GLY GLN GLY VAL LYS MET VAL THR THR GLU GLU GLN PRO SEQRES 27 C 347 LYS GLY LYS TRP GLN ALA LEU ARG ILE HELIX 1 2 ASN A 117 GLN A 125 1 9 HELIX 2 3 LEU A 166 ILE A 172 1 7 HELIX 3 6 ASN B 117 GLN B 125 1 9 HELIX 4 7 LEU B 166 ILE B 172 1 7 HELIX 5 10 ASN C 117 GLN C 125 1 9 HELIX 6 11 LEU C 166 ILE C 172 1 7 SHEET 1 2 1 ILE A 82 ASN A 96 0 SHEET 1 3 1 GLU A 100 ASN A 109 0 SHEET 1 4 1 LYS A 128 MET A 141 0 SHEET 1 5 1 GLY A 148 ASP A 157 0 SHEET 1 6 1 GLY A 174 SER A 178 0 SHEET 1 7 1 GLY A 183 THR A 193 0 SHEET 1 8 1 PHE A 209 GLN A 219 0 SHEET 1 9 1 ALA A 225 GLN A 237 0 SHEET 1 10 1 ILE A 250 ALA A 254 0 SHEET 1 11 1 LYS A 257 ARG A 261 0 SHEET 1 12 1 SER A 266 ALA A 272 0 SHEET 1 13 1 GLU A 275 PHE A 280 0 SHEET 1 14 1 ASN A 285 TYR A 292 0 SHEET 1 15 1 SER A 298 ALA A 303 0 SHEET 1 16 1 SER A 306 GLU A 313 0 SHEET 1 17 1 VAL A 319 LYS A 325 0 SHEET 1 18 1 GLN A 331 VAL A 336 0 SHEET 1 19 1 GLY A 344 ARG A 350 0 SHEET 1 21 1 ILE B 82 ASN B 96 0 SHEET 1 22 1 GLU B 100 ASN B 109 0 SHEET 1 23 1 LYS B 128 MET B 141 0 SHEET 1 24 1 GLY B 148 ASP B 157 0 SHEET 1 25 1 GLY B 174 SER B 178 0 SHEET 1 26 1 GLY B 183 THR B 193 0 SHEET 1 27 1 PHE B 209 GLN B 219 0 SHEET 1 28 1 ALA B 225 GLN B 237 0 SHEET 1 29 1 ILE B 250 ALA B 254 0 SHEET 1 30 1 LYS B 257 ARG B 261 0 SHEET 1 31 1 SER B 266 ALA B 272 0 SHEET 1 32 1 GLU B 275 PHE B 280 0 SHEET 1 33 1 ASN B 285 TYR B 292 0 SHEET 1 34 1 SER B 298 ALA B 303 0 SHEET 1 35 1 SER B 306 GLU B 313 0 SHEET 1 36 1 VAL B 319 LYS B 325 0 SHEET 1 37 1 GLN B 331 VAL B 336 0 SHEET 1 38 1 GLY B 344 ARG B 350 0 SHEET 1 39 1 ARG C 74 THR C 77 0 SHEET 1 40 1 ILE C 82 ASN C 96 0 SHEET 1 41 1 GLU C 100 ASN C 109 0 SHEET 1 42 1 LYS C 128 MET C 141 0 SHEET 1 43 1 GLY C 148 ASP C 157 0 SHEET 1 44 1 GLY C 174 SER C 178 0 SHEET 1 45 1 GLY C 183 THR C 193 0 SHEET 1 46 1 PHE C 209 GLN C 219 0 SHEET 1 47 1 ALA C 225 GLN C 237 0 SHEET 1 48 1 ILE C 250 ALA C 254 0 SHEET 1 49 1 LYS C 257 ARG C 261 0 SHEET 1 50 1 SER C 266 ALA C 272 0 SHEET 1 51 1 GLU C 275 PHE C 280 0 SHEET 1 52 1 ASN C 285 TYR C 292 0 SHEET 1 53 1 SER C 298 ALA C 303 0 SHEET 1 54 1 SER C 306 GLU C 313 0 SHEET 1 55 1 VAL C 319 LYS C 325 0 SHEET 1 56 1 GLN C 331 VAL C 336 0 SHEET 1 57 1 GLY C 344 ARG C 350 0 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000