HEADER LIGASE 11-AUG-11 3ZXI TITLE CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TYROSYL-TRNA SYNTHETASE IN TITLE 2 COMPLEX WITH A TYROSYL-ADENYLATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-375; COMPND 5 SYNONYM: TYROSINE--TRNA LIGASE, TYRRS; COMPND 6 EC: 6.1.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOACYL-TRNA SYNTHETASE, PROTEIN-SUBSTRATE COMPLEX, ATP-BINDING, KEYWDS 2 LIGASE, PROTEIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR L.BONNEFOND,M.FRUGIER,J.RUDINGER-THIRION,C.BALG,R.CHENEVERT,B.LORBER, AUTHOR 2 R.GIEGE,C.SAUTER REVDAT 4 20-DEC-23 3ZXI 1 REMARK REVDAT 3 08-MAY-19 3ZXI 1 REMARK REVDAT 2 06-MAR-19 3ZXI 1 REMARK REVDAT 1 16-NOV-11 3ZXI 0 JRNL AUTH L.BONNEFOND,P.SCHELLENBERGER,J.BASQUIN,G.DEMANGEAT, JRNL AUTH 2 C.RITZENTHALER,R.CHENEVERT,C.BALG,M.FRUGIER, JRNL AUTH 3 J.RUDINGER-THIRION,R.GIEGE,B.LORBER,C.SAUTER JRNL TITL EXPLOITING PROTEIN ENGINEERING AND CRYSTAL POLYMORPHISM FOR JRNL TITL 2 SUCCESSFUL X-RAY STRUCTURE DETERMINATION JRNL REF CRYST.GROWTH DES. V. 11 4334 2011 JRNL REFN ISSN 1528-7483 JRNL DOI 10.1021/CG101468P REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BONNEFOND,M.FRUGIER,E.TOUZE,B.LORBER,C.FLORENTZ,R.GIEGE, REMARK 1 AUTH 2 C.SAUTER,J.RUDINGER-THIRION REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TYROSYL- TRNA REMARK 1 TITL 2 SYNTHETASE REVEALS COMMON AND IDIOSYNCRATIC FEATURES. REMARK 1 REF STRUCTURE V. 15 1505 2007 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 17997975 REMARK 1 DOI 10.1016/J.STR.2007.09.018 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 16741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9391 - 4.9910 0.98 2939 135 0.2171 0.2643 REMARK 3 2 4.9910 - 3.9644 0.93 2626 148 0.1910 0.2695 REMARK 3 3 3.9644 - 3.4642 0.91 2538 142 0.2272 0.3348 REMARK 3 4 3.4642 - 3.1478 0.91 2535 122 0.2338 0.3462 REMARK 3 5 3.1478 - 2.9224 0.96 2665 144 0.2672 0.3717 REMARK 3 6 2.9224 - 2.7502 0.95 2579 168 0.3202 0.4177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 102.9 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 62.57930 REMARK 3 B22 (A**2) : -26.92900 REMARK 3 B33 (A**2) : -35.65040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5044 REMARK 3 ANGLE : 1.057 6818 REMARK 3 CHIRALITY : 0.071 734 REMARK 3 PLANARITY : 0.004 878 REMARK 3 DIHEDRAL : 20.492 1894 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 37:169) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0834 -1.4361 18.8768 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.4052 REMARK 3 T33: 0.3135 T12: 0.0292 REMARK 3 T13: -0.0403 T23: 0.1096 REMARK 3 L TENSOR REMARK 3 L11: 0.7035 L22: 0.7271 REMARK 3 L33: 1.5251 L12: -0.0053 REMARK 3 L13: 0.9114 L23: 0.0696 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: 0.2107 S13: 0.0399 REMARK 3 S21: -0.5111 S22: 0.0769 S23: 0.1434 REMARK 3 S31: -0.2790 S32: 0.7401 S33: 0.0737 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 170:295) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6462 4.4084 30.6261 REMARK 3 T TENSOR REMARK 3 T11: 0.4963 T22: 0.5136 REMARK 3 T33: 0.4557 T12: -0.1522 REMARK 3 T13: -0.0538 T23: 0.1781 REMARK 3 L TENSOR REMARK 3 L11: 1.2521 L22: 0.5017 REMARK 3 L33: 1.6397 L12: 0.0995 REMARK 3 L13: 0.8067 L23: 0.1472 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.4612 S13: -0.1017 REMARK 3 S21: -0.6605 S22: -0.1811 S23: 0.0110 REMARK 3 S31: -0.4159 S32: 0.7308 S33: 0.1627 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 296:373) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6006 2.7089 2.8818 REMARK 3 T TENSOR REMARK 3 T11: 0.9807 T22: 0.6389 REMARK 3 T33: 0.6928 T12: 0.1040 REMARK 3 T13: -0.2592 T23: 0.1334 REMARK 3 L TENSOR REMARK 3 L11: 1.2761 L22: 0.6709 REMARK 3 L33: 1.6170 L12: -0.2965 REMARK 3 L13: 0.3635 L23: 0.5176 REMARK 3 S TENSOR REMARK 3 S11: -0.1630 S12: 0.0988 S13: -0.0979 REMARK 3 S21: -1.0877 S22: 0.3561 S23: 0.6975 REMARK 3 S31: -0.6520 S32: 0.1086 S33: -0.0727 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 37:169) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0293 0.2315 68.2099 REMARK 3 T TENSOR REMARK 3 T11: 0.3587 T22: 0.2446 REMARK 3 T33: 0.2911 T12: -0.1068 REMARK 3 T13: -0.1919 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.1644 L22: 2.6786 REMARK 3 L33: 3.5338 L12: 0.5896 REMARK 3 L13: 0.8729 L23: -0.4884 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.0021 S13: -0.0987 REMARK 3 S21: 0.3073 S22: -0.0429 S23: -0.2561 REMARK 3 S31: 0.6131 S32: 0.2952 S33: -0.0225 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 170:295) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6029 3.8882 56.7587 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.4238 REMARK 3 T33: 0.4447 T12: -0.0432 REMARK 3 T13: -0.0879 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.4913 L22: 0.6360 REMARK 3 L33: 1.8413 L12: 0.2875 REMARK 3 L13: 1.0384 L23: 0.3546 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: 0.3067 S13: 0.1668 REMARK 3 S21: -0.1016 S22: -0.2496 S23: 0.1053 REMARK 3 S31: -0.2759 S32: 0.3642 S33: 0.1367 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 296:373) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8555 8.5978 84.1413 REMARK 3 T TENSOR REMARK 3 T11: 0.7573 T22: 0.7543 REMARK 3 T33: 0.6367 T12: -0.2078 REMARK 3 T13: -0.3672 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 2.0246 L22: 1.1939 REMARK 3 L33: 0.4842 L12: 0.1118 REMARK 3 L13: 0.9683 L23: -0.1502 REMARK 3 S TENSOR REMARK 3 S11: -1.0586 S12: 0.0543 S13: 0.2570 REMARK 3 S21: 1.0208 S22: 0.3314 S23: 0.0154 REMARK 3 S31: -0.7193 S32: 0.1445 S33: 0.3743 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2430 REMARK 3 RMSD : 0.049 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PID REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN (20 MG/ML STOCK SOLUTION) REMARK 280 WAS CRYSTALLIZED AT 293K BY VAPOR DIFFUSION (SITTING DROP) WITH REMARK 280 A RESERVOIR SOLUTION CONTAINING 30% (M/V) PEG-4000, 0.1 M NA REMARK 280 ACETATE PH 4.6, 0.2 M NH4 ACETATE, 0.1 M TRIS-HCL PH 7.5, 1.2 M REMARK 280 NA MALONATE., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.57000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.57000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 HIS A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 GLU A 54 REMARK 465 THR A 55 REMARK 465 GLY A 56 REMARK 465 THR A 57 REMARK 465 LYS A 58 REMARK 465 ILE A 59 REMARK 465 GLU A 60 REMARK 465 LEU A 61 REMARK 465 PRO A 62 REMARK 465 GLU A 63 REMARK 465 LEU A 64 REMARK 465 PHE A 65 REMARK 465 ASP A 66 REMARK 465 ARG A 67 REMARK 465 GLY A 68 REMARK 465 THR A 69 REMARK 465 ALA A 70 REMARK 465 SER A 71 REMARK 465 PHE A 72 REMARK 465 SER A 276 REMARK 465 THR A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 280 REMARK 465 LYS A 281 REMARK 465 LEU A 282 REMARK 465 GLY A 283 REMARK 465 LYS A 284 REMARK 465 SER A 285 REMARK 465 ALA A 286 REMARK 465 GLY A 287 REMARK 465 ASN A 288 REMARK 465 HIS A 375 REMARK 465 ARG A 376 REMARK 465 SER A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 MET B 28 REMARK 465 ARG B 29 REMARK 465 GLY B 30 REMARK 465 SER B 31 REMARK 465 HIS B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 465 ALA B 35 REMARK 465 GLN B 36 REMARK 465 GLU B 54 REMARK 465 THR B 55 REMARK 465 GLY B 56 REMARK 465 THR B 57 REMARK 465 LYS B 58 REMARK 465 ILE B 59 REMARK 465 GLU B 60 REMARK 465 LEU B 61 REMARK 465 PRO B 62 REMARK 465 GLU B 63 REMARK 465 LEU B 64 REMARK 465 PHE B 65 REMARK 465 ASP B 66 REMARK 465 ARG B 67 REMARK 465 GLY B 68 REMARK 465 THR B 69 REMARK 465 ALA B 70 REMARK 465 SER B 71 REMARK 465 PHE B 72 REMARK 465 SER B 276 REMARK 465 THR B 277 REMARK 465 THR B 278 REMARK 465 GLY B 279 REMARK 465 ALA B 280 REMARK 465 LYS B 281 REMARK 465 LEU B 282 REMARK 465 GLY B 283 REMARK 465 LYS B 284 REMARK 465 SER B 285 REMARK 465 ALA B 286 REMARK 465 GLY B 287 REMARK 465 ASN B 288 REMARK 465 HIS B 375 REMARK 465 ARG B 376 REMARK 465 SER B 377 REMARK 465 HIS B 378 REMARK 465 HIS B 379 REMARK 465 HIS B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 465 HIS B 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 374 CA C O CB CG CD1 CD2 REMARK 470 TYR A 374 CE1 CE2 CZ OH REMARK 470 TYR B 374 CA C O CB CG CD1 CD2 REMARK 470 TYR B 374 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 157 NE2 HIS B 331 2554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 104 -3.31 -59.89 REMARK 500 ALA A 131 131.74 -34.35 REMARK 500 LEU A 182 -72.23 -27.47 REMARK 500 ASP A 246 -6.39 -53.03 REMARK 500 LEU A 373 -110.19 179.83 REMARK 500 ALA B 131 130.85 -33.18 REMARK 500 PHE B 159 37.43 -141.34 REMARK 500 ASP B 161 24.51 -140.24 REMARK 500 LEU B 182 -74.60 -26.64 REMARK 500 ASP B 246 -7.09 -52.40 REMARK 500 GLU B 339 70.91 -150.00 REMARK 500 LEU B 373 -110.25 -179.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYA A 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYA B 1374 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT LACKS THE MITOCHONDRIAL TARGETING SEQUENCE REMARK 999 (MTS) AND THE C-TERMINAL S4-LIKE DOMAIN. DBREF 3ZXI A 32 375 UNP Q9Y2Z4 SYYM_HUMAN 32 375 DBREF 3ZXI B 32 375 UNP Q9Y2Z4 SYYM_HUMAN 32 375 SEQADV 3ZXI MET A 28 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI ARG A 29 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI GLY A 30 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI SER A 31 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI ARG A 376 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI SER A 377 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS A 378 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS A 379 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS A 380 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS A 381 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS A 382 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS A 383 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI MET B 28 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI ARG B 29 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI GLY B 30 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI SER B 31 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI ARG B 376 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI SER B 377 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS B 378 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS B 379 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS B 380 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS B 381 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS B 382 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 3ZXI HIS B 383 UNP Q9Y2Z4 EXPRESSION TAG SEQRES 1 A 356 MET ARG GLY SER HIS SER GLY ALA GLN GLY LEU LEU ALA SEQRES 2 A 356 ALA GLN LYS ALA ARG GLY LEU PHE LYS ASP PHE PHE PRO SEQRES 3 A 356 GLU THR GLY THR LYS ILE GLU LEU PRO GLU LEU PHE ASP SEQRES 4 A 356 ARG GLY THR ALA SER PHE PRO GLN THR ILE TYR CYS GLY SEQRES 5 A 356 PHE ASP PRO THR ALA ASP SER LEU HIS VAL GLY HIS LEU SEQRES 6 A 356 LEU ALA LEU LEU GLY LEU PHE HIS LEU GLN ARG ALA GLY SEQRES 7 A 356 HIS ASN VAL ILE ALA LEU VAL GLY GLY ALA THR ALA ARG SEQRES 8 A 356 LEU GLY ASP PRO SER GLY ARG THR LYS GLU ARG GLU ALA SEQRES 9 A 356 LEU GLU THR GLU ARG VAL ARG ALA ASN ALA ARG ALA LEU SEQRES 10 A 356 ARG LEU GLY LEU GLU ALA LEU ALA ALA ASN HIS GLN GLN SEQRES 11 A 356 LEU PHE THR ASP GLY ARG SER TRP GLY SER PHE THR VAL SEQRES 12 A 356 LEU ASP ASN SER ALA TRP TYR GLN LYS GLN HIS LEU VAL SEQRES 13 A 356 ASP PHE LEU ALA ALA VAL GLY GLY HIS PHE ARG MET GLY SEQRES 14 A 356 THR LEU LEU SER ARG GLN SER VAL GLN LEU ARG LEU LYS SEQRES 15 A 356 SER PRO GLU GLY MET SER LEU ALA GLU PHE PHE TYR GLN SEQRES 16 A 356 VAL LEU GLN ALA TYR ASP PHE TYR TYR LEU PHE GLN ARG SEQRES 17 A 356 TYR GLY CYS ARG VAL GLN LEU GLY GLY SER ASP GLN LEU SEQRES 18 A 356 GLY ASN ILE MET SER GLY TYR GLU PHE ILE ASN LYS LEU SEQRES 19 A 356 THR GLY GLU ASP VAL PHE GLY ILE THR VAL PRO LEU ILE SEQRES 20 A 356 THR SER THR THR GLY ALA LYS LEU GLY LYS SER ALA GLY SEQRES 21 A 356 ASN ALA VAL TRP LEU ASN ARG ASP LYS THR SER PRO PHE SEQRES 22 A 356 GLU LEU TYR GLN PHE PHE VAL ARG GLN PRO ASP ASP SER SEQRES 23 A 356 VAL GLU ARG TYR LEU LYS LEU PHE THR PHE LEU PRO LEU SEQRES 24 A 356 PRO GLU ILE ASP HIS ILE MET GLN LEU HIS VAL LYS GLU SEQRES 25 A 356 PRO GLU ARG ARG GLY PRO GLN LYS ARG LEU ALA ALA GLU SEQRES 26 A 356 VAL THR LYS LEU VAL HIS GLY ARG GLU GLY LEU ASP SER SEQRES 27 A 356 ALA LYS ARG CYS THR GLN ALA LEU TYR HIS ARG SER HIS SEQRES 28 A 356 HIS HIS HIS HIS HIS SEQRES 1 B 356 MET ARG GLY SER HIS SER GLY ALA GLN GLY LEU LEU ALA SEQRES 2 B 356 ALA GLN LYS ALA ARG GLY LEU PHE LYS ASP PHE PHE PRO SEQRES 3 B 356 GLU THR GLY THR LYS ILE GLU LEU PRO GLU LEU PHE ASP SEQRES 4 B 356 ARG GLY THR ALA SER PHE PRO GLN THR ILE TYR CYS GLY SEQRES 5 B 356 PHE ASP PRO THR ALA ASP SER LEU HIS VAL GLY HIS LEU SEQRES 6 B 356 LEU ALA LEU LEU GLY LEU PHE HIS LEU GLN ARG ALA GLY SEQRES 7 B 356 HIS ASN VAL ILE ALA LEU VAL GLY GLY ALA THR ALA ARG SEQRES 8 B 356 LEU GLY ASP PRO SER GLY ARG THR LYS GLU ARG GLU ALA SEQRES 9 B 356 LEU GLU THR GLU ARG VAL ARG ALA ASN ALA ARG ALA LEU SEQRES 10 B 356 ARG LEU GLY LEU GLU ALA LEU ALA ALA ASN HIS GLN GLN SEQRES 11 B 356 LEU PHE THR ASP GLY ARG SER TRP GLY SER PHE THR VAL SEQRES 12 B 356 LEU ASP ASN SER ALA TRP TYR GLN LYS GLN HIS LEU VAL SEQRES 13 B 356 ASP PHE LEU ALA ALA VAL GLY GLY HIS PHE ARG MET GLY SEQRES 14 B 356 THR LEU LEU SER ARG GLN SER VAL GLN LEU ARG LEU LYS SEQRES 15 B 356 SER PRO GLU GLY MET SER LEU ALA GLU PHE PHE TYR GLN SEQRES 16 B 356 VAL LEU GLN ALA TYR ASP PHE TYR TYR LEU PHE GLN ARG SEQRES 17 B 356 TYR GLY CYS ARG VAL GLN LEU GLY GLY SER ASP GLN LEU SEQRES 18 B 356 GLY ASN ILE MET SER GLY TYR GLU PHE ILE ASN LYS LEU SEQRES 19 B 356 THR GLY GLU ASP VAL PHE GLY ILE THR VAL PRO LEU ILE SEQRES 20 B 356 THR SER THR THR GLY ALA LYS LEU GLY LYS SER ALA GLY SEQRES 21 B 356 ASN ALA VAL TRP LEU ASN ARG ASP LYS THR SER PRO PHE SEQRES 22 B 356 GLU LEU TYR GLN PHE PHE VAL ARG GLN PRO ASP ASP SER SEQRES 23 B 356 VAL GLU ARG TYR LEU LYS LEU PHE THR PHE LEU PRO LEU SEQRES 24 B 356 PRO GLU ILE ASP HIS ILE MET GLN LEU HIS VAL LYS GLU SEQRES 25 B 356 PRO GLU ARG ARG GLY PRO GLN LYS ARG LEU ALA ALA GLU SEQRES 26 B 356 VAL THR LYS LEU VAL HIS GLY ARG GLU GLY LEU ASP SER SEQRES 27 B 356 ALA LYS ARG CYS THR GLN ALA LEU TYR HIS ARG SER HIS SEQRES 28 B 356 HIS HIS HIS HIS HIS HET TYA A1374 34 HET TYA B1374 34 HETNAM TYA PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL HETNAM 2 TYA ESTER ADENOSIN-5'YL ESTER FORMUL 3 TYA 2(C19 H24 N6 O8 P 1-) HELIX 1 1 GLY A 37 ARG A 45 1 9 HELIX 2 2 HIS A 88 ALA A 104 1 17 HELIX 3 3 ALA A 115 GLY A 120 1 6 HELIX 4 4 GLU A 133 LEU A 158 1 26 HELIX 5 5 ASN A 173 GLN A 178 1 6 HELIX 6 6 HIS A 181 VAL A 189 1 9 HELIX 7 7 ARG A 194 SER A 200 1 7 HELIX 8 8 ARG A 201 SER A 203 5 3 HELIX 9 9 VAL A 204 LYS A 209 1 6 HELIX 10 10 SER A 215 GLY A 237 1 23 HELIX 11 11 GLN A 247 THR A 262 1 16 HELIX 12 12 SER A 298 ARG A 308 1 11 HELIX 13 13 PRO A 310 THR A 322 1 13 HELIX 14 14 PRO A 325 GLU A 339 1 15 HELIX 15 15 PRO A 340 ARG A 342 5 3 HELIX 16 16 ARG A 343 ALA A 372 1 30 HELIX 17 17 GLY B 37 ARG B 45 1 9 HELIX 18 18 HIS B 88 ALA B 104 1 17 HELIX 19 19 ALA B 115 GLY B 120 1 6 HELIX 20 20 GLU B 133 LEU B 158 1 26 HELIX 21 21 ASN B 173 GLN B 178 1 6 HELIX 22 22 HIS B 181 VAL B 189 1 9 HELIX 23 23 ARG B 194 SER B 200 1 7 HELIX 24 24 VAL B 204 LYS B 209 1 6 HELIX 25 25 SER B 215 GLY B 237 1 23 HELIX 26 26 GLN B 247 THR B 262 1 16 HELIX 27 27 SER B 298 ARG B 308 1 11 HELIX 28 28 PRO B 310 THR B 322 1 13 HELIX 29 29 PRO B 325 GLU B 339 1 15 HELIX 30 30 PRO B 340 ARG B 342 5 3 HELIX 31 31 ARG B 343 ALA B 372 1 30 SHEET 1 AA 6 ASP A 50 PHE A 52 0 SHEET 2 AA 6 PHE A 267 VAL A 271 -1 O GLY A 268 N PHE A 52 SHEET 3 AA 6 VAL A 240 GLY A 244 1 O GLN A 241 N ILE A 269 SHEET 4 AA 6 THR A 75 PHE A 80 1 O TYR A 77 N LEU A 242 SHEET 5 AA 6 ASN A 107 VAL A 112 1 O ASN A 107 N ILE A 76 SHEET 6 AA 6 PHE A 168 ASP A 172 1 O THR A 169 N ALA A 110 SHEET 1 BA 6 ASP B 50 PHE B 52 0 SHEET 2 BA 6 PHE B 267 VAL B 271 -1 O GLY B 268 N PHE B 52 SHEET 3 BA 6 VAL B 240 GLY B 244 1 O GLN B 241 N ILE B 269 SHEET 4 BA 6 THR B 75 PHE B 80 1 O TYR B 77 N LEU B 242 SHEET 5 BA 6 ASN B 107 VAL B 112 1 O ASN B 107 N ILE B 76 SHEET 6 BA 6 PHE B 168 ASP B 172 1 O THR B 169 N ALA B 110 CISPEP 1 PHE A 52 PRO A 53 0 2.39 CISPEP 2 PHE B 52 PRO B 53 0 2.81 SITE 1 AC1 19 TYR A 77 GLY A 79 ASP A 81 HIS A 88 SITE 2 AC1 19 GLY A 90 HIS A 91 LEU A 111 THR A 116 SITE 3 AC1 19 ASP A 121 TYR A 221 GLN A 225 ASP A 228 SITE 4 AC1 19 GLY A 243 GLY A 244 ASP A 246 GLN A 247 SITE 5 AC1 19 PRO A 272 LEU A 273 ILE A 274 SITE 1 AC2 21 TYR B 77 GLY B 79 ASP B 81 HIS B 88 SITE 2 AC2 21 GLY B 90 HIS B 91 ALA B 94 LEU B 111 SITE 3 AC2 21 THR B 116 ASP B 121 TYR B 221 GLN B 225 SITE 4 AC2 21 ASP B 228 GLN B 241 GLY B 243 GLY B 244 SITE 5 AC2 21 ASP B 246 GLN B 247 PRO B 272 LEU B 273 SITE 6 AC2 21 ILE B 274 CRYST1 53.140 62.870 196.320 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005094 0.00000