HEADER TRANSFERASE 13-AUG-11 3ZXO TITLE CRYSTAL STRUCTURE OF THE MUTANT ATP-BINDING DOMAIN OF TITLE 2 MYCOBACTERIUM TUBERCULOSIS DOSS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDOX SENSOR HISTIDINE KINASE RESPONSE REGULATOR DEVS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ATP-BINDING DOMAIN, RESIDUES 454-578; COMPND 5 SYNONYM: TWO COMPONENT SENSOR HISTIDINE KINASE DEVS; COMPND 6 EC: 2.7.3.-, 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.CHO,H.J.CHO,B.S.KANG REVDAT 4 22-MAY-13 3ZXO 1 JRNL REVDAT 3 27-MAR-13 3ZXO 1 JRNL REVDAT 2 03-OCT-12 3ZXO 1 REMARK REVDAT 1 24-AUG-11 3ZXO 0 JRNL AUTH H.Y.CHO,Y.H.LEE,Y.S.BAE,E.KIM,B.S.KANG JRNL TITL ACTIVATION OF ATP BINDING FOR THE AUTOPHOSPHORYLATION OF JRNL TITL 2 DOSS, A MYCOBACTERIUM TUBERCULOSIS HISTIDINE KINASE LACKING JRNL TITL 3 AN ATP-LID MOTIF. JRNL REF J.BIOL.CHEM. V. 288 12437 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23486471 JRNL DOI 10.1074/JBC.M112.442467 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SARDIWAL,S.L.KENDALL,F.MOVAHEDZADEH,S.C.G.RISON, REMARK 1 AUTH 2 N.G.STOKER,S.DJORDJEVIC REMARK 1 TITL A GAF DOMAIN IN THE HYPOXIA/NO-INDUCIBLE MYCOBACTERIUM REMARK 1 TITL 2 TUBERCULOSIS DOSS PROTEIN BINDS HAEM. REMARK 1 REF J.MOL.BIOL. V. 353 929 2005 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16213520 REMARK 1 DOI 10.1016/J.JMB.2005.09.011 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 20025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18832 REMARK 3 R VALUE (WORKING SET) : 0.18580 REMARK 3 FREE R VALUE : 0.23585 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.900 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.949 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.206 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1964 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.668 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00 REMARK 3 B22 (A**2) : 0.00 REMARK 3 B33 (A**2) : 0.00 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2018 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2763 ; 1.458 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 5.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;33.445 ;22.809 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;13.850 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1558 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1324 ; 1.023 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2125 ; 1.818 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 694 ; 2.799 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 623 ; 4.597 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 3 T454 TO Q578 OF DOSS WITH ADDITIONAL V SEQUENCE AT THE N- REMARK 3 -TERMINUS DUE TO CLONING PROCEDURE REMARK 4 REMARK 4 3ZXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-11. REMARK 100 THE PDBE ID CODE IS EBI-49343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (PROTEUM 300) REMARK 200 DETECTOR MANUFACTURER : BRUKER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 22.3 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.97 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.8 REMARK 200 R MERGE FOR SHELL (I) : 0.46 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.26 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM REMARK 280 15% PEG 1500, 200 MM ZINC ACETATE, 100 MM CITRATE, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.30400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.59300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.59300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.15200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.59300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.59300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.45600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.59300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.59300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.15200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.59300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.59300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 138.45600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.30400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 26.59300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 79.77900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -46.15200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2048 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2060 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 509 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 534 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 562 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 509 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 534 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 562 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 450 REMARK 465 ALA A 451 REMARK 465 MSE A 452 REMARK 465 VAL A 453 REMARK 465 GLY B 450 REMARK 465 ALA B 451 REMARK 465 MSE B 452 REMARK 465 GLN B 578 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 520 -105.32 -142.81 REMARK 500 ASP B 520 -116.44 -141.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1579 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 507 NE2 REMARK 620 2 GLU A 537 OE2 105.7 REMARK 620 3 HOH A2062 O 105.7 96.9 REMARK 620 4 GLU A 537 OE1 85.5 53.8 150.7 REMARK 620 5 ASP A 529 OD2 125.6 111.6 107.5 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1578 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 529 OD2 REMARK 620 2 GLU B 537 OE1 89.9 REMARK 620 3 GLU B 537 OE2 106.8 56.5 REMARK 620 4 HOH B2042 O 103.4 150.0 93.7 REMARK 620 5 HIS B 507 NE2 124.5 86.7 116.5 106.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1581 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1578 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1581 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W3H RELATED DB: PDB REMARK 900 CYANIDE BOUND STRUCTURE OF THE FIRST GAF DOMAIN OF REMARK 900 MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3F RELATED DB: PDB REMARK 900 REDUCED STRUCTURE OF THE FIRST GAF DOMAIN OF REMARK 900 MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3E RELATED DB: PDB REMARK 900 OXIDIZED STRUCTURE OF THE FIRST GAF DOMAIN OF REMARK 900 MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3G RELATED DB: PDB REMARK 900 AIR-OXIDIZED STRUCTURE OF THE FIRST GAF DOMAIN OF REMARK 900 MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3D RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM REMARK 900 TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2Y79 RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIRST GAF DOMAIN E87A MUTANT OF REMARK 900 MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 3ZXQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ATP-BINDING DOMAIN OF REMARK 900 MYCOBACTERIUM TUBERCULOSIS DOST REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADDITIONAL GAMV SEQUENCE AT THE N-TERMINUS DUE TO CLONING REMARK 999 PROCEDURE DBREF 3ZXO A 454 578 UNP P95194 DEVS_MYCTU 454 578 DBREF 3ZXO B 454 578 UNP P95194 DEVS_MYCTU 454 578 SEQADV 3ZXO GLY A 450 UNP P95194 EXPRESSION TAG SEQADV 3ZXO ALA A 451 UNP P95194 EXPRESSION TAG SEQADV 3ZXO MSE A 452 UNP P95194 EXPRESSION TAG SEQADV 3ZXO VAL A 453 UNP P95194 EXPRESSION TAG SEQADV 3ZXO ALA A 509 UNP P95194 LYS 509 ENGINEERED MUTATION SEQADV 3ZXO MSE A 534 UNP P95194 LEU 534 ENGINEERED MUTATION SEQADV 3ZXO MSE A 562 UNP P95194 VAL 562 ENGINEERED MUTATION SEQADV 3ZXO GLY B 450 UNP P95194 EXPRESSION TAG SEQADV 3ZXO ALA B 451 UNP P95194 EXPRESSION TAG SEQADV 3ZXO MSE B 452 UNP P95194 EXPRESSION TAG SEQADV 3ZXO VAL B 453 UNP P95194 EXPRESSION TAG SEQADV 3ZXO ALA B 509 UNP P95194 LYS 509 ENGINEERED MUTATION SEQADV 3ZXO MSE B 534 UNP P95194 LEU 534 ENGINEERED MUTATION SEQADV 3ZXO MSE B 562 UNP P95194 VAL 562 ENGINEERED MUTATION SEQRES 1 A 129 GLY ALA MSE VAL THR ARG LEU ARG GLN ARG ILE ASP ALA SEQRES 2 A 129 ALA VAL ALA GLN PHE ALA ASP SER GLY LEU ARG THR SER SEQRES 3 A 129 VAL GLN PHE VAL GLY PRO LEU SER VAL VAL ASP SER ALA SEQRES 4 A 129 LEU ALA ASP GLN ALA GLU ALA VAL VAL ARG GLU ALA VAL SEQRES 5 A 129 SER ASN ALA VAL ARG HIS ALA ALA ALA SER THR LEU THR SEQRES 6 A 129 VAL ARG VAL LYS VAL ASP ASP ASP LEU OCS ILE GLU VAL SEQRES 7 A 129 THR ASP ASN GLY ARG GLY MSE PRO ASP GLU PHE THR GLY SEQRES 8 A 129 SER GLY LEU THR ASN LEU ARG GLN ARG ALA GLU GLN ALA SEQRES 9 A 129 GLY GLY GLU PHE THR LEU ALA SER MSE PRO GLY ALA SER SEQRES 10 A 129 GLY THR VAL LEU ARG TRP SER ALA PRO LEU SER GLN SEQRES 1 B 129 GLY ALA MSE VAL THR ARG LEU ARG GLN ARG ILE ASP ALA SEQRES 2 B 129 ALA VAL ALA GLN PHE ALA ASP SER GLY LEU ARG THR SER SEQRES 3 B 129 VAL GLN PHE VAL GLY PRO LEU SER VAL VAL ASP SER ALA SEQRES 4 B 129 LEU ALA ASP GLN ALA GLU ALA VAL VAL ARG GLU ALA VAL SEQRES 5 B 129 SER ASN ALA VAL ARG HIS ALA ALA ALA SER THR LEU THR SEQRES 6 B 129 VAL ARG VAL LYS VAL ASP ASP ASP LEU OCS ILE GLU VAL SEQRES 7 B 129 THR ASP ASN GLY ARG GLY MSE PRO ASP GLU PHE THR GLY SEQRES 8 B 129 SER GLY LEU THR ASN LEU ARG GLN ARG ALA GLU GLN ALA SEQRES 9 B 129 GLY GLY GLU PHE THR LEU ALA SER MSE PRO GLY ALA SER SEQRES 10 B 129 GLY THR VAL LEU ARG TRP SER ALA PRO LEU SER GLN MODRES 3ZXO OCS A 524 CYS CYSTEINESULFONIC ACID MODRES 3ZXO MSE A 534 MET SELENOMETHIONINE MODRES 3ZXO MSE A 562 MET SELENOMETHIONINE MODRES 3ZXO OCS B 524 CYS CYSTEINESULFONIC ACID MODRES 3ZXO MSE B 534 MET SELENOMETHIONINE MODRES 3ZXO MSE B 562 MET SELENOMETHIONINE HET OCS A 524 9 HET MSE A 534 8 HET MSE A 562 13 HET OCS B 524 9 HET MSE B 534 8 HET MSE B 562 13 HET ZN A1579 1 HET ACT A1580 4 HET ACT A1581 4 HET ZN B1578 1 HET ACT B1579 4 HET ACT B1580 4 HET GOL B1581 6 HETNAM OCS CYSTEINESULFONIC ACID HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MSE 4(C5 H11 N O2 SE) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 7 OCS 2(C3 H7 N O5 S) FORMUL 8 HOH *190(H2 O) HELIX 1 1 ARG A 455 ALA A 468 1 14 HELIX 2 2 PRO A 481 VAL A 485 5 5 HELIX 3 3 ASP A 486 ALA A 504 1 19 HELIX 4 4 GLY A 540 ALA A 553 1 14 HELIX 5 5 ARG B 455 ALA B 468 1 14 HELIX 6 6 PRO B 481 VAL B 485 5 5 HELIX 7 7 ASP B 486 ASN B 503 1 18 HELIX 8 8 GLY B 540 ALA B 553 1 14 SHEET 1 AA10 GLU A 556 SER A 561 0 SHEET 2 AA10 THR A 568 PRO A 575 -1 O VAL A 569 N ALA A 560 SHEET 3 AA10 ASP A 522 ASP A 529 -1 O LEU A 523 N ALA A 574 SHEET 4 AA10 THR A 512 VAL A 519 -1 O THR A 514 N THR A 528 SHEET 5 AA10 ARG A 473 VAL A 479 1 O ARG A 473 N LEU A 513 SHEET 6 AA10 ARG B 473 VAL B 479 1 O THR B 474 N THR A 474 SHEET 7 AA10 THR B 512 VAL B 519 1 O LEU B 513 N SER B 475 SHEET 8 AA10 ASP B 522 ASP B 529 -1 O OCS B 524 N LYS B 518 SHEET 9 AA10 THR B 568 PRO B 575 -1 O THR B 568 N ASP B 529 SHEET 10 AA10 GLU B 556 SER B 561 -1 O GLU B 556 N SER B 573 LINK C LEU A 523 N OCS A 524 1555 1555 1.33 LINK C OCS A 524 N ILE A 525 1555 1555 1.33 LINK C GLY A 533 N MSE A 534 1555 1555 1.33 LINK C MSE A 534 N PRO A 535 1555 1555 1.36 LINK C SER A 561 N MSE A 562 1555 1555 1.34 LINK C MSE A 562 N PRO A 563 1555 1555 1.36 LINK ZN ZN A1579 OE2 GLU A 537 1555 1555 2.00 LINK ZN ZN A1579 NE2 HIS A 507 1555 1555 1.94 LINK ZN ZN A1579 O HOH A2062 1555 1555 1.95 LINK ZN ZN A1579 OE1 GLU A 537 1555 1555 2.66 LINK ZN ZN A1579 OD2 ASP A 529 1555 1555 1.83 LINK C LEU B 523 N OCS B 524 1555 1555 1.33 LINK C OCS B 524 N ILE B 525 1555 1555 1.33 LINK C GLY B 533 N MSE B 534 1555 1555 1.33 LINK C MSE B 534 N PRO B 535 1555 1555 1.36 LINK C SER B 561 N MSE B 562 1555 1555 1.34 LINK C MSE B 562 N PRO B 563 1555 1555 1.36 LINK ZN ZN B1578 NE2 HIS B 507 1555 1555 2.00 LINK ZN ZN B1578 O HOH B2042 1555 1555 1.93 LINK ZN ZN B1578 OE2 GLU B 537 1555 1555 2.04 LINK ZN ZN B1578 OE1 GLU B 537 1555 1555 2.51 LINK ZN ZN B1578 OD2 ASP B 529 1555 1555 1.90 SITE 1 AC1 5 VAL A 505 HIS A 507 ASP A 529 GLU A 537 SITE 2 AC1 5 HOH A2062 SITE 1 AC2 4 LYS A 518 ASP A 521 ASP A 522 HOH A2078 SITE 1 AC3 6 GLU A 499 ASN A 503 PHE A 538 GLY A 542 SITE 2 AC3 6 LEU A 543 LEU A 546 SITE 1 AC4 5 VAL B 505 HIS B 507 ASP B 529 GLU B 537 SITE 2 AC4 5 HOH B2042 SITE 1 AC5 2 ASP B 521 ASP B 522 SITE 1 AC6 6 ASN B 503 PHE B 538 GLY B 542 LEU B 543 SITE 2 AC6 6 LEU B 546 HOH B2041 SITE 1 AC7 4 GLU A 494 MSE B 534 ASP B 536 HOH B2068 CRYST1 53.186 53.186 184.608 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005417 0.00000