HEADER SIGNALING 24-AUG-11 3ZYQ TITLE CRYSTAL STRUCTURE OF THE TANDEM VHS AND FYVE DOMAINS OF HEPATOCYTE TITLE 2 GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE (HGS-HRS) AT 1.48 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE COMPND 3 SUBSTRATE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: VHS AND FYVE DOMAINS, RESIDUES 691-915; COMPND 6 SYNONYM: HRS, PROTEIN PP110; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PNIC28-BSA4 KEYWDS SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR J.R.C.MUNIZ,V.AYINAMPUDI,L.SHRESTHA,T.KROJER,M.VOLLMAR,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,A.BULLOCK REVDAT 3 08-MAY-24 3ZYQ 1 REMARK LINK REVDAT 2 24-JAN-18 3ZYQ 1 JRNL REVDAT 1 07-SEP-11 3ZYQ 0 JRNL AUTH J.R.C.MUNIZ,V.AYINAMPUDI,L.SHRESTHA,T.KROJER,M.VOLLMAR, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA, JRNL AUTH 3 A.BULLOCK JRNL TITL CRYSTAL STRUCTURE OF THE TANDEM VHS AND FYVE DOMAINS OF JRNL TITL 2 HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE JRNL TITL 3 (HGS-HRS) AT 1.48 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 35011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2438 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1883 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1322 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2551 ; 1.541 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3226 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 5.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.998 ;24.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;14.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.803 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2098 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 386 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3205 ; 3.201 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 101 ;29.807 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3217 ;12.390 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4238 12.3870 -23.9961 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.0826 REMARK 3 T33: 0.1035 T12: -0.0058 REMARK 3 T13: -0.0045 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.6671 L22: 0.9340 REMARK 3 L33: 1.7258 L12: 0.0314 REMARK 3 L13: 0.4459 L23: 0.2197 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.0399 S13: -0.1978 REMARK 3 S21: 0.0057 S22: 0.0160 S23: 0.0078 REMARK 3 S31: 0.1423 S32: -0.0292 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8514 13.7242 -8.9083 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1541 REMARK 3 T33: 0.1093 T12: -0.0020 REMARK 3 T13: 0.0033 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.9536 L22: 1.0843 REMARK 3 L33: 2.2040 L12: 0.3085 REMARK 3 L13: 1.0488 L23: 0.1677 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: -0.2459 S13: -0.3511 REMARK 3 S21: 0.0829 S22: 0.0111 S23: 0.0312 REMARK 3 S31: 0.3038 S32: -0.1915 S33: -0.0897 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2597 23.8335 -11.1599 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1969 REMARK 3 T33: 0.1680 T12: 0.0280 REMARK 3 T13: -0.0046 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.1558 L22: 0.3295 REMARK 3 L33: 3.0063 L12: -0.0871 REMARK 3 L13: 1.2187 L23: -0.5825 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.1414 S13: 0.1302 REMARK 3 S21: 0.0528 S22: 0.0028 S23: -0.0353 REMARK 3 S31: -0.2508 S32: -0.1219 S33: 0.0569 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9672 28.6840 -35.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0540 REMARK 3 T33: 0.0930 T12: 0.0073 REMARK 3 T13: 0.0040 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.8957 L22: 1.5957 REMARK 3 L33: 2.3961 L12: 0.3474 REMARK 3 L13: 0.5321 L23: 0.6695 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0990 S13: 0.0165 REMARK 3 S21: 0.0807 S22: -0.0097 S23: -0.0016 REMARK 3 S31: 0.0066 S32: -0.0285 S33: 0.0109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97695 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 42.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 19.12800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.17300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.26650 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 19.12800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.17300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 85.26650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 LYS A 222 REMARK 465 ALA A 223 REMARK 465 GLU A 224 REMARK 465 GLY A 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLN A 77 CD OE1 NE2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 GLN A 87 CD OE1 NE2 REMARK 470 LYS A 97 CE NZ REMARK 470 MET A 151 CG SD CE REMARK 470 VAL A 175 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 106 O HOH A 2075 1.94 REMARK 500 N VAL A 175 O HOH A 2116 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1222 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 166 SG REMARK 620 2 CYS A 169 SG 107.1 REMARK 620 3 CYS A 190 SG 115.1 112.6 REMARK 620 4 CYS A 193 SG 103.9 112.5 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1223 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 182 SG REMARK 620 2 CYS A 185 SG 103.6 REMARK 620 3 CYS A 212 SG 113.7 118.5 REMARK 620 4 CYS A 215 SG 110.9 113.7 96.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1226 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D3G RELATED DB: PDB REMARK 900 DOUBLE SIDED UBIQUITIN BINDING OF HRS-UIM DBREF 3ZYQ A 1 225 UNP O14964 HGS_HUMAN 691 915 SEQADV 3ZYQ SER A 0 UNP O14964 EXPRESSION TAG SEQRES 1 A 226 SER MET GLY ARG GLY SER GLY THR PHE GLU ARG LEU LEU SEQRES 2 A 226 ASP LYS ALA THR SER GLN LEU LEU LEU GLU THR ASP TRP SEQRES 3 A 226 GLU SER ILE LEU GLN ILE CYS ASP LEU ILE ARG GLN GLY SEQRES 4 A 226 ASP THR GLN ALA LYS TYR ALA VAL ASN SER ILE LYS LYS SEQRES 5 A 226 LYS VAL ASN ASP LYS ASN PRO HIS VAL ALA LEU TYR ALA SEQRES 6 A 226 LEU GLU VAL MET GLU SER VAL VAL LYS ASN CYS GLY GLN SEQRES 7 A 226 THR VAL HIS ASP GLU VAL ALA ASN LYS GLN THR MET GLU SEQRES 8 A 226 GLU LEU LYS ASP LEU LEU LYS ARG GLN VAL GLU VAL ASN SEQRES 9 A 226 VAL ARG ASN LYS ILE LEU TYR LEU ILE GLN ALA TRP ALA SEQRES 10 A 226 HIS ALA PHE ARG ASN GLU PRO LYS TYR LYS VAL VAL GLN SEQRES 11 A 226 ASP THR TYR GLN ILE MET LYS VAL GLU GLY HIS VAL PHE SEQRES 12 A 226 PRO GLU PHE LYS GLU SER ASP ALA MET PHE ALA ALA GLU SEQRES 13 A 226 ARG ALA PRO ASP TRP VAL ASP ALA GLU GLU CYS HIS ARG SEQRES 14 A 226 CYS ARG VAL GLN PHE GLY VAL MET THR ARG LYS HIS HIS SEQRES 15 A 226 CYS ARG ALA CYS GLY GLN ILE PHE CYS GLY LYS CYS SER SEQRES 16 A 226 SER LYS TYR SER THR ILE PRO LYS PHE GLY ILE GLU LYS SEQRES 17 A 226 GLU VAL ARG VAL CYS GLU PRO CYS TYR GLU GLN LEU ASN SEQRES 18 A 226 ARG LYS ALA GLU GLY HET ZN A1222 1 HET ZN A1223 1 HET SO4 A1224 5 HET EDO A1225 8 HET EDO A1226 8 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *155(H2 O) HELIX 1 1 GLY A 6 THR A 16 1 11 HELIX 2 2 ASP A 24 GLN A 37 1 14 HELIX 3 3 GLN A 41 ASN A 54 1 14 HELIX 4 4 ASN A 57 GLY A 76 1 20 HELIX 5 5 GLY A 76 ALA A 84 1 9 HELIX 6 6 ASN A 85 GLN A 99 1 15 HELIX 7 7 GLU A 101 PHE A 119 1 19 HELIX 8 8 GLU A 122 LYS A 124 5 3 HELIX 9 9 TYR A 125 GLY A 139 1 15 HELIX 10 10 LYS A 146 MET A 151 5 6 HELIX 11 11 PRO A 201 GLY A 204 5 4 HELIX 12 12 CYS A 212 ASN A 220 1 9 SHEET 1 AA 2 HIS A 180 HIS A 181 0 SHEET 2 AA 2 ILE A 188 PHE A 189 -1 O PHE A 189 N HIS A 180 SHEET 1 AB 2 LYS A 196 ILE A 200 0 SHEET 2 AB 2 ILE A 205 VAL A 211 -1 O ILE A 205 N ILE A 200 LINK SG CYS A 166 ZN ZN A1222 1555 1555 2.39 LINK SG CYS A 169 ZN ZN A1222 1555 1555 2.34 LINK SG CYS A 182 ZN ZN A1223 1555 1555 2.29 LINK SG CYS A 185 ZN ZN A1223 1555 1555 2.36 LINK SG CYS A 190 ZN ZN A1222 1555 1555 2.29 LINK SG CYS A 193 ZN ZN A1222 1555 1555 2.29 LINK SG CYS A 212 ZN ZN A1223 1555 1555 2.39 LINK SG CYS A 215 ZN ZN A1223 1555 1555 2.35 SITE 1 AC1 4 CYS A 166 CYS A 169 CYS A 190 CYS A 193 SITE 1 AC2 4 CYS A 182 CYS A 185 CYS A 212 CYS A 215 SITE 1 AC3 12 VAL A 161 ALA A 163 HIS A 180 HIS A 181 SITE 2 AC3 12 ARG A 183 ARG A 210 HOH A2107 HOH A2124 SITE 3 AC3 12 HOH A2125 HOH A2127 HOH A2148 HOH A2150 SITE 1 AC4 6 ARG A 10 ASP A 13 LYS A 14 TYR A 197 SITE 2 AC4 6 HOH A2103 HOH A2147 SITE 1 AC5 6 MET A 176 THR A 177 ARG A 178 HIS A 180 SITE 2 AC5 6 HOH A2118 HOH A2120 CRYST1 38.256 34.346 170.533 90.00 90.00 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.029115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005864 0.00000