HEADER TRANSFERASE 31-AUG-11 3ZZ2 OBSLTE 10-OCT-12 3ZZ2 4BC6 TITLE CRYSTAL STRUCTURE OF HUMAN SERINE THREONINE KINASE-10 BOUND TITLE 2 TO 4-[(2,4-DICHLORO-5-METHOXYPHENYL)AMINO]-6- METHOXY-7- TITLE 3 [3-(4-METHYLPIPERAZIN-1-YL)PROPOXY]QUINOLINE-3-CARBONITRILE TITLE 4 APPARENTLY MODIFIED THROUGH RADIATION DAMAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 24-316; COMPND 5 SYNONYM: SERINE THREONINE KINASE-10, LYMPHOCYTE-ORIENTED KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-LAMBDA-PPASE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VOLLMAR,M.SZKLARZ,A.CHAIKUAD,J.ELKINS,P.SAVITSKY,K.ABDUL AZEEZ, AUTHOR 2 E.SALAH,T.KROJER,P.CANNING,J.R.C.MUNIZ,F.VON DELFT,C.BOUNTRA, AUTHOR 3 C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,S.KNAPP REVDAT 3 10-OCT-12 3ZZ2 1 OBSLTE REVDAT 2 21-DEC-11 3ZZ2 1 TITLE REMARK HET HETNAM REVDAT 2 2 HETSYN FORMUL HETATM REVDAT 1 09-NOV-11 3ZZ2 0 JRNL AUTH M.VOLLMAR,M.SZKLARZ,P.SAVITSKY,K.ABDUL AZEEZ,E.SALAH, JRNL AUTH 2 T.KROJER,P.CANNING,J.R.C.MUNIZ,F.VON DELFT,C.BOUNTRA, JRNL AUTH 3 C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF HUMAN SERINE THREONINE KINASE- 10 JRNL TITL 2 BOUND TO BOSUTINIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 80.96 REMARK 3 NUMBER OF REFLECTIONS : 15727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21494 REMARK 3 R VALUE (WORKING SET) : 0.21110 REMARK 3 FREE R VALUE : 0.28806 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.200 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.256 REMARK 3 REFLECTION IN BIN (WORKING SET) : 587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.192 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.243 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.498 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12 REMARK 3 B22 (A**2) : -0.08 REMARK 3 B33 (A**2) : 0.20 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.540 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2250 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1480 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3064 ; 1.579 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3645 ; 0.942 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;30.347 ;24.773 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;16.829 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.698 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2471 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 414 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0358 -19.6903 21.2005 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.1652 REMARK 3 T33: 0.1707 T12: -0.0088 REMARK 3 T13: 0.0134 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.8773 L22: 0.4995 REMARK 3 L33: 1.3246 L12: -0.5769 REMARK 3 L13: 0.3869 L23: 0.1131 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0371 S13: 0.1066 REMARK 3 S21: -0.0956 S22: 0.0136 S23: -0.0868 REMARK 3 S31: -0.2611 S32: 0.0333 S33: -0.0201 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -30.3390 -30.2076 0.5954 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.3641 REMARK 3 T33: 0.0225 T12: 0.0154 REMARK 3 T13: -0.0594 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.6850 L22: 0.6397 REMARK 3 L33: 2.0321 L12: 1.2640 REMARK 3 L13: 2.3299 L23: 1.1139 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: -0.0531 S13: -0.0026 REMARK 3 S21: 0.0461 S22: 0.0651 S23: -0.0133 REMARK 3 S31: -0.0014 S32: -0.0398 S33: -0.0133 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6268 -40.6632 17.6192 REMARK 3 T TENSOR REMARK 3 T11: 0.2329 T22: 0.1408 REMARK 3 T33: 0.1466 T12: -0.0085 REMARK 3 T13: -0.0598 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.3166 L22: 0.2306 REMARK 3 L33: 0.3926 L12: -0.1897 REMARK 3 L13: -0.0177 L23: -0.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.0063 S13: -0.0590 REMARK 3 S21: -0.0948 S22: -0.0484 S23: 0.0617 REMARK 3 S31: 0.2237 S32: 0.0564 S33: -0.0506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 3ZZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-11. REMARK 100 THE PDBE ID CODE IS EBI-49488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PILATUS-2M REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.20 REMARK 200 RESOLUTION RANGE LOW (A) : 19.18 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.4 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.5 REMARK 200 R MERGE FOR SHELL (I) : 0.72 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2J7T REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG PH 7.0, 60.0% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.58500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.01500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.17000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.58500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.01500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.17000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.58500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.01500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.17000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.58500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.01500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -51.17000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 69 REMARK 465 LYS A 70 REMARK 465 SER A 71 REMARK 465 GLU A 72 REMARK 465 LYS A 188 REMARK 465 ARG A 189 REMARK 465 ASP A 190 REMARK 465 SER A 191 REMARK 465 PHE A 192 REMARK 465 ILE A 193 REMARK 465 GLY A 194 REMARK 465 THR A 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG A 27 CD NE CZ NH1 NH2 REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 VAL A 35 CG1 CG2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 LYS A 95 CD CE NZ REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 ARG A 152 CD NE CZ NH1 NH2 REMARK 470 ILE A 154 CD1 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 MET A 205 CE REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 THR A 208 OG1 CG2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 TYR A 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 243 CG SD CE REMARK 470 LEU A 247 CG CD1 CD2 REMARK 470 LYS A 248 NZ REMARK 470 LYS A 272 CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 92 CE MET A 315 8445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 46 -65.19 -28.74 REMARK 500 ASP A 175 83.48 56.15 REMARK 500 PHE A 176 31.30 -93.03 REMARK 500 LYS A 210 44.67 -94.71 REMARK 500 ASP A 211 149.26 -178.05 REMARK 500 PRO A 213 45.71 -101.88 REMARK 500 ILE A 233 -35.15 82.86 REMARK 500 LEU A 275 45.88 -104.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 FOR HETEROGEN 4-[(2,4-DICHLORO-5-METHOXYPHENYL)AMINO]-6-METHOXY-7- REMARK 600 [3-(4-METHYLPIPERAZIN-1-YL)PROPOXY]QUINOLINE-3-CARBONITRILE, (D88) REMARK 600 THE DENSITY CLEARLY SHOWS A FULLY OCCUPIED CL IN THE META POSITION, REMARK 600 AND NOT THE ORIGINAL ORTHO, EVEN THOUGH THE SUPPLIER CONFIRMED THE REMARK 600 INTEGRITY OF ORIGINAL COMPOUND (BOSUTINIB). RADIATION DAMAGE MAY REMARK 600 HAVE INDUCED THE MIGRATION. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D88 A1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J7T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SERINE THREONINE KINASE-10 REMARK 900 BOUND TO SU11274 DBREF 3ZZ2 A 24 316 UNP O94804 STK10_HUMAN 24 316 SEQRES 1 A 293 GLU HIS VAL ARG ARG ASP LEU ASP PRO ASN GLU VAL TRP SEQRES 2 A 293 GLU ILE VAL GLY GLU LEU GLY ASP GLY ALA PHE GLY LYS SEQRES 3 A 293 VAL TYR LYS ALA LYS ASN LYS GLU THR GLY ALA LEU ALA SEQRES 4 A 293 ALA ALA LYS VAL ILE GLU THR LYS SER GLU GLU GLU LEU SEQRES 5 A 293 GLU ASP TYR ILE VAL GLU ILE GLU ILE LEU ALA THR CYS SEQRES 6 A 293 ASP HIS PRO TYR ILE VAL LYS LEU LEU GLY ALA TYR TYR SEQRES 7 A 293 HIS ASP GLY LYS LEU TRP ILE MET ILE GLU PHE CYS PRO SEQRES 8 A 293 GLY GLY ALA VAL ASP ALA ILE MET LEU GLU LEU ASP ARG SEQRES 9 A 293 GLY LEU THR GLU PRO GLN ILE GLN VAL VAL CYS ARG GLN SEQRES 10 A 293 MET LEU GLU ALA LEU ASN PHE LEU HIS SER LYS ARG ILE SEQRES 11 A 293 ILE HIS ARG ASP LEU LYS ALA GLY ASN VAL LEU MET THR SEQRES 12 A 293 LEU GLU GLY ASP ILE ARG LEU ALA ASP PHE GLY VAL SER SEQRES 13 A 293 ALA LYS ASN LEU LYS THR LEU GLN LYS ARG ASP SER PHE SEQRES 14 A 293 ILE GLY THR PRO TYR TRP MET ALA PRO GLU VAL VAL MET SEQRES 15 A 293 CYS GLU THR MET LYS ASP THR PRO TYR ASP TYR LYS ALA SEQRES 16 A 293 ASP ILE TRP SER LEU GLY ILE THR LEU ILE GLU MET ALA SEQRES 17 A 293 GLN ILE GLU PRO PRO HIS HIS GLU LEU ASN PRO MET ARG SEQRES 18 A 293 VAL LEU LEU LYS ILE ALA LYS SER ASP PRO PRO THR LEU SEQRES 19 A 293 LEU THR PRO SER LYS TRP SER VAL GLU PHE ARG ASP PHE SEQRES 20 A 293 LEU LYS ILE ALA LEU ASP LYS ASN PRO GLU THR ARG PRO SEQRES 21 A 293 SER ALA ALA GLN LEU LEU GLU HIS PRO PHE VAL SER SER SEQRES 22 A 293 ILE THR SER ASN LYS ALA LEU ARG GLU LEU VAL ALA GLU SEQRES 23 A 293 ALA LYS ALA GLU VAL MET GLU HET D88 A1317 36 HET EDO A1318 4 HET EDO A1319 4 HETNAM D88 4-[(3,4-DICHLORO-5-METHOXYPHENYL)AMINO]-6- HETNAM 2 D88 METHOXY-7-[3-(4-METHYLPIPERAZIN-1-YL)PROPOXY] HETNAM 3 D88 QUINOLINE-3-CARBONITRILE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 D88 C26 H29 CL2 N5 O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 HOH *85(H2 O) HELIX 1 1 ASP A 31 GLU A 34 5 4 HELIX 2 2 GLU A 74 CYS A 88 1 15 HELIX 3 3 VAL A 118 ASP A 126 1 9 HELIX 4 4 THR A 130 LYS A 151 1 22 HELIX 5 5 LYS A 159 GLY A 161 5 3 HELIX 6 6 PHE A 176 GLN A 187 1 12 HELIX 7 7 ALA A 200 CYS A 206 1 7 HELIX 8 8 TYR A 216 ILE A 233 1 18 HELIX 9 9 ASN A 241 SER A 252 1 12 HELIX 10 10 THR A 259 TRP A 263 5 5 HELIX 11 11 SER A 264 LEU A 275 1 12 HELIX 12 12 SER A 284 LEU A 289 1 6 HELIX 13 13 HIS A 291 SER A 296 1 6 HELIX 14 14 ASN A 300 GLU A 316 1 17 SHEET 1 AA 6 VAL A 26 ARG A 27 0 SHEET 2 AA 6 LEU A 96 HIS A 102 1 O ALA A 99 N ARG A 27 SHEET 3 AA 6 LYS A 105 GLU A 111 -1 O LYS A 105 N HIS A 102 SHEET 4 AA 6 LEU A 61 ILE A 67 -1 O ALA A 63 N ILE A 110 SHEET 5 AA 6 VAL A 50 ASN A 55 -1 O TYR A 51 N ALA A 64 SHEET 6 AA 6 TRP A 36 GLY A 43 -1 O GLU A 37 N LYS A 54 SHEET 1 AB 3 GLY A 116 ALA A 117 0 SHEET 2 AB 3 VAL A 163 MET A 165 -1 N MET A 165 O GLY A 116 SHEET 3 AB 3 ILE A 171 LEU A 173 -1 O ARG A 172 N LEU A 164 CISPEP 1 THR A 212 PRO A 213 0 1.33 SITE 1 AC1 14 LEU A 42 ALA A 63 LYS A 65 VAL A 94 SITE 2 AC1 14 ILE A 108 ILE A 110 GLU A 111 PHE A 112 SITE 3 AC1 14 CYS A 113 PRO A 114 GLY A 116 GLU A 124 SITE 4 AC1 14 LEU A 164 ASP A 175 SITE 1 AC2 5 THR A 130 GLN A 133 ALA A 302 GLU A 305 SITE 2 AC2 5 HOH A2082 SITE 1 AC3 7 PHE A 147 ARG A 304 GLU A 305 ALA A 308 SITE 2 AC3 7 HOH A2056 HOH A2083 HOH A2084 CRYST1 51.170 114.030 134.340 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007444 0.00000