data_3ZZV # _entry.id 3ZZV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZZV pdb_00003zzv 10.2210/pdb3zzv/pdb PDBE EBI-49483 ? ? WWPDB D_1290049483 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZWE unspecified 'STRUCTURE OF BAMBL, A LECTIN FROM BURKHOLDERIA AMBIFARIA, COMPLEXED WITH BLOOD GROUP B EPITOPE' PDB 3ZW2 unspecified 'STRUCTURE OF THE LECTIN BAMBL FROM BURKHOLDERIA AMBIFARIA IN COMPLEX WITH BLOOD GROUP H TYPE 1 TETRASACCHARIDE' PDB 3ZW0 unspecified 'STRUCTURE OF BAMBL LECTIN FROM BURKHOLDERIA AMBIFARIA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZZV _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-09-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Audfray, A.' 1 'Claudinon, J.' 2 'Abounit, S.' 3 'Ruvoen-Clouet, N.' 4 'Larson, G.' 5 'Wimmerova, M.' 6 'LePendu, J.' 7 'Romer, W.' 8 'Varrot, A.' 9 'Imberty, A.' 10 # _citation.id primary _citation.title 'Fucose-Binding Lectin from Opportunistic Pathogen Burkholderia Ambifaria Binds to Both Plant and Human Oligosaccharidic Epitopes.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 4335 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22170069 _citation.pdbx_database_id_DOI 10.1074/JBC.M111.314831 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Audfray, A.' 1 ? primary 'Claudinon, J.' 2 ? primary 'Abounit, S.' 3 ? primary 'Ruvoen-Clouet, N.' 4 ? primary 'Larson, G.' 5 ? primary 'Smith, D.F.' 6 ? primary 'Wimmerova, M.' 7 ? primary 'Le Pendu, J.' 8 ? primary 'Romer, W.' 9 ? primary 'Varrot, A.' 10 ? primary 'Imberty, A.' 11 ? # _cell.entry_id 3ZZV _cell.length_a 35.740 _cell.length_b 47.770 _cell.length_c 74.600 _cell.angle_alpha 90.00 _cell.angle_beta 100.81 _cell.angle_gamma 90.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZZV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BAMBL LECTIN' 9387.166 3 ? ? ? ? 2 branched man 'alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 529.490 5 ? ? ? ? 3 non-polymer man alpha-L-fucopyranose 164.156 1 ? ? ? ? 4 water nat water 18.015 208 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'H type 2 antigen, beta anomer' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQTAAISWGTTPSIRVYTANGNKITERCYDGSNWYTGAFNQAGDNVSATCWLSGSAVHIRVYATSGGSTTEWCWDGDGWT RGAYTGL ; _entity_poly.pdbx_seq_one_letter_code_can ;MQTAAISWGTTPSIRVYTANGNKITERCYDGSNWYTGAFNQAGDNVSATCWLSGSAVHIRVYATSGGSTTEWCWDGDGWT RGAYTGL ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 THR n 1 4 ALA n 1 5 ALA n 1 6 ILE n 1 7 SER n 1 8 TRP n 1 9 GLY n 1 10 THR n 1 11 THR n 1 12 PRO n 1 13 SER n 1 14 ILE n 1 15 ARG n 1 16 VAL n 1 17 TYR n 1 18 THR n 1 19 ALA n 1 20 ASN n 1 21 GLY n 1 22 ASN n 1 23 LYS n 1 24 ILE n 1 25 THR n 1 26 GLU n 1 27 ARG n 1 28 CYS n 1 29 TYR n 1 30 ASP n 1 31 GLY n 1 32 SER n 1 33 ASN n 1 34 TRP n 1 35 TYR n 1 36 THR n 1 37 GLY n 1 38 ALA n 1 39 PHE n 1 40 ASN n 1 41 GLN n 1 42 ALA n 1 43 GLY n 1 44 ASP n 1 45 ASN n 1 46 VAL n 1 47 SER n 1 48 ALA n 1 49 THR n 1 50 CYS n 1 51 TRP n 1 52 LEU n 1 53 SER n 1 54 GLY n 1 55 SER n 1 56 ALA n 1 57 VAL n 1 58 HIS n 1 59 ILE n 1 60 ARG n 1 61 VAL n 1 62 TYR n 1 63 ALA n 1 64 THR n 1 65 SER n 1 66 GLY n 1 67 GLY n 1 68 SER n 1 69 THR n 1 70 THR n 1 71 GLU n 1 72 TRP n 1 73 CYS n 1 74 TRP n 1 75 ASP n 1 76 GLY n 1 77 ASP n 1 78 GLY n 1 79 TRP n 1 80 THR n 1 81 ARG n 1 82 GLY n 1 83 ALA n 1 84 TYR n 1 85 THR n 1 86 GLY n 1 87 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain AMMD _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BURKHOLDERIA AMBIFARIA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 339670 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-244/AMMD _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET25 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0B4G1_BURCM _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q0B4G1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ZZV A 1 ? 87 ? Q0B4G1 1 ? 87 ? 1 87 2 1 3ZZV B 1 ? 87 ? Q0B4G1 1 ? 87 ? 1 87 3 1 3ZZV C 1 ? 87 ? Q0B4G1 1 ? 87 ? 1 87 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZZV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.28 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2011-06-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9334 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.9334 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZZV _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 73.28 _reflns.d_resolution_high 1.68 _reflns.number_obs 26045 _reflns.number_all ? _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.30 _reflns.B_iso_Wilson_estimate 27 _reflns.pdbx_redundancy 3.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.68 _reflns_shell.d_res_low 1.77 _reflns_shell.percent_possible_all 81.2 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 2.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZZV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 26045 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 73.28 _refine.ls_d_res_high 1.68 _refine.ls_percent_reflns_obs 96.66 _refine.ls_R_factor_obs 0.21453 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21139 _refine.ls_R_factor_R_free 0.27052 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1380 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 19.817 _refine.aniso_B[1][1] 2.26 _refine.aniso_B[2][2] -1.03 _refine.aniso_B[3][3] -0.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 2.03 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' _refine.pdbx_starting_model 'PDB ENTRY 3WZ0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.139 _refine.pdbx_overall_ESU_R_Free 0.142 _refine.overall_SU_ML 0.122 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.751 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1982 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 191 _refine_hist.number_atoms_solvent 208 _refine_hist.number_atoms_total 2381 _refine_hist.d_res_high 1.68 _refine_hist.d_res_low 73.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 2253 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1387 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.861 1.977 ? 3108 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.051 3.000 ? 3303 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.621 5.000 ? 262 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.983 23.077 ? 91 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.039 15.000 ? 266 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.631 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.170 0.200 ? 373 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 2417 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 482 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.047 1.500 ? 1280 'X-RAY DIFFRACTION' ? r_mcbond_other 0.267 1.500 ? 555 'X-RAY DIFFRACTION' ? r_mcangle_it 1.780 2.000 ? 2034 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.278 3.000 ? 973 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.106 4.500 ? 1073 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.680 _refine_ls_shell.d_res_low 1.724 _refine_ls_shell.number_reflns_R_work 1489 _refine_ls_shell.R_factor_R_work 0.348 _refine_ls_shell.percent_reflns_obs 74.52 _refine_ls_shell.R_factor_R_free 0.389 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.908000 -0.417200 0.038300 -0.165300 -0.440800 -0.882300 0.384900 0.794800 -0.469200 3.13200 -6.22900 -29.13000 2 given ? 0.915000 -0.139300 0.378700 -0.399700 -0.441700 0.803200 0.055380 -0.886300 -0.459900 6.92200 22.17000 -18.65000 3 given ? 0.918300 -0.394400 0.034510 -0.161000 -0.451700 -0.877500 0.361700 0.800300 -0.478300 2.78300 -5.75800 -29.82000 # _struct.entry_id 3ZZV _struct.title 'BambL complexed with Htype2 tetrasaccharide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZZV _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'SUGAR BINDING PROTEIN, CYSTIC FIBROSIS, BETA-PROPELLER, HUMAN HISTO-BLOOD GROUP' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? D NAG . O4 ? ? ? 1_555 D GAL . C1 ? ? D NAG 1 D GAL 2 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale2 covale both ? D GAL . O2 ? ? ? 1_555 D FUC . C1 ? ? D GAL 2 D FUC 3 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale3 covale both ? E NAG . O4 ? ? ? 1_555 E GAL . C1 ? ? E NAG 1 E GAL 2 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale4 covale both ? E GAL . O2 ? ? ? 1_555 E FUC . C1 ? ? E GAL 2 E FUC 3 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale5 covale both ? F NAG . O4 ? ? ? 1_555 F GAL . C1 ? ? F NAG 1 F GAL 2 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale6 covale both ? F GAL . O2 ? ? ? 1_555 F FUC . C1 ? ? F GAL 2 F FUC 3 1_555 ? ? ? ? ? ? ? 1.458 ? ? covale7 covale both ? G NAG . O4 ? ? ? 1_555 G GAL . C1 ? ? G NAG 1 G GAL 2 1_555 ? ? ? ? ? ? ? 1.452 ? ? covale8 covale both ? G GAL . O2 ? ? ? 1_555 G FUC . C1 ? ? G GAL 2 G FUC 3 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale9 covale both ? H NAG . O4 ? ? ? 1_555 H GAL . C1 ? ? H NAG 1 H GAL 2 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale10 covale both ? H GAL . O2 ? ? ? 1_555 H FUC . C1 ? ? H GAL 2 H FUC 3 1_555 ? ? ? ? ? ? ? 1.432 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 11 A . ? THR 11 A PRO 12 A ? PRO 12 A 1 -6.08 2 THR 11 B . ? THR 11 B PRO 12 B ? PRO 12 B 1 -4.16 3 THR 11 C . ? THR 11 C PRO 12 C ? PRO 12 C 1 -5.21 4 GLY 54 C . ? GLY 54 C SER 55 C ? SER 55 C 1 13.26 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? BA ? 4 ? BB ? 4 ? CA ? 4 ? CB ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? anti-parallel CA 1 2 ? anti-parallel CA 2 3 ? anti-parallel CA 3 4 ? anti-parallel CB 1 2 ? anti-parallel CB 2 3 ? anti-parallel CB 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLN A 2 ? TRP A 8 ? GLN A 2 TRP A 8 AA 2 SER A 13 ? ASN A 20 ? SER A 13 ASN A 20 AA 3 LYS A 23 ? TYR A 29 ? LYS A 23 TYR A 29 AA 4 TRP A 34 ? ALA A 42 ? TRP A 34 ALA A 42 AB 1 ASN A 45 ? SER A 53 ? ASN A 45 SER A 53 AB 2 ALA A 56 ? SER A 65 ? ALA A 56 SER A 65 AB 3 SER A 68 ? TRP A 74 ? SER A 68 TRP A 74 AB 4 TRP A 79 ? ARG A 81 ? TRP A 79 ARG A 81 BA 1 GLN B 2 ? TRP B 8 ? GLN B 2 TRP B 8 BA 2 SER B 13 ? ASN B 20 ? SER B 13 ASN B 20 BA 3 LYS B 23 ? TYR B 29 ? LYS B 23 TYR B 29 BA 4 TRP B 34 ? ALA B 42 ? TRP B 34 ALA B 42 BB 1 ASN B 45 ? SER B 53 ? ASN B 45 SER B 53 BB 2 ALA B 56 ? SER B 65 ? ALA B 56 SER B 65 BB 3 SER B 68 ? TRP B 74 ? SER B 68 TRP B 74 BB 4 TRP B 79 ? ARG B 81 ? TRP B 79 ARG B 81 CA 1 GLN C 2 ? TRP C 8 ? GLN C 2 TRP C 8 CA 2 SER C 13 ? ASN C 20 ? SER C 13 ASN C 20 CA 3 LYS C 23 ? TYR C 29 ? LYS C 23 TYR C 29 CA 4 TRP C 34 ? ALA C 42 ? TRP C 34 ALA C 42 CB 1 ASN C 45 ? LEU C 52 ? ASN C 45 LEU C 52 CB 2 VAL C 57 ? SER C 65 ? VAL C 57 SER C 65 CB 3 SER C 68 ? TRP C 74 ? SER C 68 TRP C 74 CB 4 TRP C 79 ? ARG C 81 ? TRP C 79 ARG C 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TRP A 8 ? N TRP A 8 O SER A 13 ? O SER A 13 AA 2 3 N ASN A 20 ? N ASN A 20 O LYS A 23 ? O LYS A 23 AA 3 4 N CYS A 28 ? N CYS A 28 O TYR A 35 ? O TYR A 35 AB 1 2 N SER A 53 ? N SER A 53 O ALA A 56 ? O ALA A 56 AB 2 3 N SER A 65 ? N SER A 65 O SER A 68 ? O SER A 68 AB 3 4 N CYS A 73 ? N CYS A 73 O THR A 80 ? O THR A 80 BA 1 2 N TRP B 8 ? N TRP B 8 O SER B 13 ? O SER B 13 BA 2 3 N ASN B 20 ? N ASN B 20 O LYS B 23 ? O LYS B 23 BA 3 4 N CYS B 28 ? N CYS B 28 O TYR B 35 ? O TYR B 35 BB 1 2 N SER B 53 ? N SER B 53 O ALA B 56 ? O ALA B 56 BB 2 3 N SER B 65 ? N SER B 65 O SER B 68 ? O SER B 68 BB 3 4 N CYS B 73 ? N CYS B 73 O THR B 80 ? O THR B 80 CA 1 2 N TRP C 8 ? N TRP C 8 O SER C 13 ? O SER C 13 CA 2 3 N ASN C 20 ? N ASN C 20 O LYS C 23 ? O LYS C 23 CA 3 4 N CYS C 28 ? N CYS C 28 O TYR C 35 ? O TYR C 35 CB 1 2 N TRP C 51 ? N TRP C 51 O HIS C 58 ? O HIS C 58 CB 2 3 N SER C 65 ? N SER C 65 O SER C 68 ? O SER C 68 CB 3 4 N CYS C 73 ? N CYS C 73 O THR C 80 ? O THR C 80 # _database_PDB_matrix.entry_id 3ZZV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZZV _atom_sites.fract_transf_matrix[1][1] 0.027980 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005343 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020934 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013647 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'GAL F 2 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 CYS 73 73 73 CYS CYS A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 LEU 87 87 87 LEU LEU A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 THR 3 3 3 THR THR B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 TRP 8 8 8 TRP TRP B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 THR 10 10 10 THR THR B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 SER 13 13 13 SER SER B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 TYR 17 17 17 TYR TYR B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 ASN 22 22 22 ASN ASN B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 TYR 29 29 29 TYR TYR B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 ASN 33 33 33 ASN ASN B . n B 1 34 TRP 34 34 34 TRP TRP B . n B 1 35 TYR 35 35 35 TYR TYR B . n B 1 36 THR 36 36 36 THR THR B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 PHE 39 39 39 PHE PHE B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 GLN 41 41 41 GLN GLN B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 GLY 43 43 43 GLY GLY B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 ASN 45 45 45 ASN ASN B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 THR 49 49 49 THR THR B . n B 1 50 CYS 50 50 50 CYS CYS B . n B 1 51 TRP 51 51 51 TRP TRP B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 SER 53 53 53 SER SER B . n B 1 54 GLY 54 54 54 GLY GLY B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 VAL 57 57 57 VAL VAL B . n B 1 58 HIS 58 58 58 HIS HIS B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 ARG 60 60 60 ARG ARG B . n B 1 61 VAL 61 61 61 VAL VAL B . n B 1 62 TYR 62 62 62 TYR TYR B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 THR 64 64 64 THR THR B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 SER 68 68 68 SER SER B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 THR 70 70 70 THR THR B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 TRP 72 72 72 TRP TRP B . n B 1 73 CYS 73 73 73 CYS CYS B . n B 1 74 TRP 74 74 74 TRP TRP B . n B 1 75 ASP 75 75 75 ASP ASP B . n B 1 76 GLY 76 76 76 GLY GLY B . n B 1 77 ASP 77 77 77 ASP ASP B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 TRP 79 79 79 TRP TRP B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 ARG 81 81 81 ARG ARG B . n B 1 82 GLY 82 82 82 GLY GLY B . n B 1 83 ALA 83 83 83 ALA ALA B . n B 1 84 TYR 84 84 84 TYR TYR B . n B 1 85 THR 85 85 85 THR THR B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 LEU 87 87 87 LEU LEU B . n C 1 1 MET 1 1 1 MET MET C . n C 1 2 GLN 2 2 2 GLN GLN C . n C 1 3 THR 3 3 3 THR THR C . n C 1 4 ALA 4 4 4 ALA ALA C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 SER 7 7 7 SER SER C . n C 1 8 TRP 8 8 8 TRP TRP C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 THR 10 10 10 THR THR C . n C 1 11 THR 11 11 11 THR THR C . n C 1 12 PRO 12 12 12 PRO PRO C . n C 1 13 SER 13 13 13 SER SER C . n C 1 14 ILE 14 14 14 ILE ILE C . n C 1 15 ARG 15 15 15 ARG ARG C . n C 1 16 VAL 16 16 16 VAL VAL C . n C 1 17 TYR 17 17 17 TYR TYR C . n C 1 18 THR 18 18 18 THR THR C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 ASN 20 20 20 ASN ASN C . n C 1 21 GLY 21 21 21 GLY GLY C . n C 1 22 ASN 22 22 22 ASN ASN C . n C 1 23 LYS 23 23 23 LYS LYS C . n C 1 24 ILE 24 24 24 ILE ILE C . n C 1 25 THR 25 25 25 THR THR C . n C 1 26 GLU 26 26 26 GLU GLU C . n C 1 27 ARG 27 27 27 ARG ARG C . n C 1 28 CYS 28 28 28 CYS CYS C . n C 1 29 TYR 29 29 29 TYR TYR C . n C 1 30 ASP 30 30 30 ASP ASP C . n C 1 31 GLY 31 31 31 GLY GLY C . n C 1 32 SER 32 32 32 SER SER C . n C 1 33 ASN 33 33 33 ASN ASN C . n C 1 34 TRP 34 34 34 TRP TRP C . n C 1 35 TYR 35 35 35 TYR TYR C . n C 1 36 THR 36 36 36 THR THR C . n C 1 37 GLY 37 37 37 GLY GLY C . n C 1 38 ALA 38 38 38 ALA ALA C . n C 1 39 PHE 39 39 39 PHE PHE C . n C 1 40 ASN 40 40 40 ASN ASN C . n C 1 41 GLN 41 41 41 GLN GLN C . n C 1 42 ALA 42 42 42 ALA ALA C . n C 1 43 GLY 43 43 43 GLY GLY C . n C 1 44 ASP 44 44 44 ASP ASP C . n C 1 45 ASN 45 45 45 ASN ASN C . n C 1 46 VAL 46 46 46 VAL VAL C . n C 1 47 SER 47 47 47 SER SER C . n C 1 48 ALA 48 48 48 ALA ALA C . n C 1 49 THR 49 49 49 THR THR C . n C 1 50 CYS 50 50 50 CYS CYS C . n C 1 51 TRP 51 51 51 TRP TRP C . n C 1 52 LEU 52 52 52 LEU LEU C . n C 1 53 SER 53 53 53 SER SER C . n C 1 54 GLY 54 54 54 GLY GLY C . n C 1 55 SER 55 55 55 SER SER C . n C 1 56 ALA 56 56 56 ALA ALA C . n C 1 57 VAL 57 57 57 VAL VAL C . n C 1 58 HIS 58 58 58 HIS HIS C . n C 1 59 ILE 59 59 59 ILE ILE C . n C 1 60 ARG 60 60 60 ARG ARG C . n C 1 61 VAL 61 61 61 VAL VAL C . n C 1 62 TYR 62 62 62 TYR TYR C . n C 1 63 ALA 63 63 63 ALA ALA C . n C 1 64 THR 64 64 64 THR THR C . n C 1 65 SER 65 65 65 SER SER C . n C 1 66 GLY 66 66 66 GLY GLY C . n C 1 67 GLY 67 67 67 GLY GLY C . n C 1 68 SER 68 68 68 SER SER C . n C 1 69 THR 69 69 69 THR THR C . n C 1 70 THR 70 70 70 THR THR C . n C 1 71 GLU 71 71 71 GLU GLU C . n C 1 72 TRP 72 72 72 TRP TRP C . n C 1 73 CYS 73 73 73 CYS CYS C . n C 1 74 TRP 74 74 74 TRP TRP C . n C 1 75 ASP 75 75 75 ASP ASP C . n C 1 76 GLY 76 76 76 GLY GLY C . n C 1 77 ASP 77 77 77 ASP ASP C . n C 1 78 GLY 78 78 78 GLY GLY C . n C 1 79 TRP 79 79 79 TRP TRP C . n C 1 80 THR 80 80 80 THR THR C . n C 1 81 ARG 81 81 81 ARG ARG C . n C 1 82 GLY 82 82 82 GLY GLY C . n C 1 83 ALA 83 83 83 ALA ALA C . n C 1 84 TYR 84 84 84 TYR TYR C . n C 1 85 THR 85 85 85 THR THR C . n C 1 86 GLY 86 86 86 GLY GLY C . n C 1 87 LEU 87 87 87 LEU LEU C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FUC 1 401 401 FUC FUC B . J 4 HOH 1 2001 2001 HOH HOH A . J 4 HOH 2 2002 2002 HOH HOH A . J 4 HOH 3 2003 2003 HOH HOH A . J 4 HOH 4 2004 2004 HOH HOH A . J 4 HOH 5 2005 2005 HOH HOH A . J 4 HOH 6 2006 2006 HOH HOH A . J 4 HOH 7 2007 2007 HOH HOH A . J 4 HOH 8 2008 2008 HOH HOH A . J 4 HOH 9 2009 2009 HOH HOH A . J 4 HOH 10 2010 2010 HOH HOH A . J 4 HOH 11 2011 2011 HOH HOH A . J 4 HOH 12 2012 2012 HOH HOH A . J 4 HOH 13 2013 2013 HOH HOH A . J 4 HOH 14 2014 2014 HOH HOH A . J 4 HOH 15 2015 2015 HOH HOH A . J 4 HOH 16 2016 2016 HOH HOH A . J 4 HOH 17 2017 2017 HOH HOH A . J 4 HOH 18 2018 2018 HOH HOH A . J 4 HOH 19 2019 2019 HOH HOH A . J 4 HOH 20 2020 2020 HOH HOH A . J 4 HOH 21 2021 2021 HOH HOH A . J 4 HOH 22 2022 2022 HOH HOH A . J 4 HOH 23 2023 2023 HOH HOH A . J 4 HOH 24 2024 2024 HOH HOH A . J 4 HOH 25 2025 2025 HOH HOH A . J 4 HOH 26 2026 2026 HOH HOH A . J 4 HOH 27 2027 2027 HOH HOH A . J 4 HOH 28 2028 2028 HOH HOH A . J 4 HOH 29 2029 2029 HOH HOH A . J 4 HOH 30 2030 2030 HOH HOH A . J 4 HOH 31 2031 2031 HOH HOH A . J 4 HOH 32 2032 2032 HOH HOH A . J 4 HOH 33 2033 2033 HOH HOH A . J 4 HOH 34 2034 2034 HOH HOH A . J 4 HOH 35 2035 2035 HOH HOH A . J 4 HOH 36 2036 2036 HOH HOH A . J 4 HOH 37 2037 2037 HOH HOH A . J 4 HOH 38 2038 2038 HOH HOH A . J 4 HOH 39 2039 2039 HOH HOH A . J 4 HOH 40 2040 2040 HOH HOH A . J 4 HOH 41 2041 2041 HOH HOH A . J 4 HOH 42 2042 2042 HOH HOH A . J 4 HOH 43 2043 2043 HOH HOH A . J 4 HOH 44 2044 2044 HOH HOH A . J 4 HOH 45 2045 2045 HOH HOH A . J 4 HOH 46 2046 2046 HOH HOH A . J 4 HOH 47 2047 2047 HOH HOH A . J 4 HOH 48 2048 2048 HOH HOH A . J 4 HOH 49 2049 2049 HOH HOH A . J 4 HOH 50 2050 2050 HOH HOH A . J 4 HOH 51 2051 2051 HOH HOH A . J 4 HOH 52 2052 2052 HOH HOH A . J 4 HOH 53 2053 2053 HOH HOH A . J 4 HOH 54 2054 2054 HOH HOH A . J 4 HOH 55 2055 2055 HOH HOH A . J 4 HOH 56 2056 2056 HOH HOH A . J 4 HOH 57 2057 2057 HOH HOH A . J 4 HOH 58 2058 2058 HOH HOH A . J 4 HOH 59 2059 2059 HOH HOH A . J 4 HOH 60 2060 2060 HOH HOH A . J 4 HOH 61 2061 2061 HOH HOH A . J 4 HOH 62 2062 2062 HOH HOH A . J 4 HOH 63 2063 2063 HOH HOH A . J 4 HOH 64 2064 2064 HOH HOH A . J 4 HOH 65 2065 2065 HOH HOH A . J 4 HOH 66 2066 2066 HOH HOH A . J 4 HOH 67 2067 2067 HOH HOH A . J 4 HOH 68 2068 2068 HOH HOH A . J 4 HOH 69 2069 2069 HOH HOH A . J 4 HOH 70 2070 2070 HOH HOH A . J 4 HOH 71 2071 2071 HOH HOH A . J 4 HOH 72 2072 2072 HOH HOH A . J 4 HOH 73 2073 2073 HOH HOH A . J 4 HOH 74 2074 2074 HOH HOH A . J 4 HOH 75 2075 2075 HOH HOH A . J 4 HOH 76 2076 2076 HOH HOH A . J 4 HOH 77 2078 2078 HOH HOH A . J 4 HOH 78 2079 2079 HOH HOH A . J 4 HOH 79 2080 2080 HOH HOH A . J 4 HOH 80 2081 2081 HOH HOH A . J 4 HOH 81 2082 2082 HOH HOH A . J 4 HOH 82 2083 2083 HOH HOH A . J 4 HOH 83 2084 2084 HOH HOH A . J 4 HOH 84 2085 2085 HOH HOH A . J 4 HOH 85 2086 2086 HOH HOH A . J 4 HOH 86 2087 2087 HOH HOH A . J 4 HOH 87 2088 2088 HOH HOH A . J 4 HOH 88 2089 2089 HOH HOH A . J 4 HOH 89 2090 2090 HOH HOH A . J 4 HOH 90 2091 2091 HOH HOH A . J 4 HOH 91 2092 2092 HOH HOH A . J 4 HOH 92 2093 2093 HOH HOH A . J 4 HOH 93 2094 2094 HOH HOH A . J 4 HOH 94 2095 2095 HOH HOH A . J 4 HOH 95 2096 2096 HOH HOH A . J 4 HOH 96 2097 2097 HOH HOH A . J 4 HOH 97 2098 2098 HOH HOH A . J 4 HOH 98 2099 2099 HOH HOH A . J 4 HOH 99 2100 2100 HOH HOH A . J 4 HOH 100 2101 2101 HOH HOH A . J 4 HOH 101 2102 2102 HOH HOH A . J 4 HOH 102 2103 2103 HOH HOH A . J 4 HOH 103 2104 2104 HOH HOH A . J 4 HOH 104 2105 2105 HOH HOH A . J 4 HOH 105 2106 2106 HOH HOH A . J 4 HOH 106 2107 2107 HOH HOH A . K 4 HOH 1 2001 2001 HOH HOH B . K 4 HOH 2 2002 2002 HOH HOH B . K 4 HOH 3 2003 2003 HOH HOH B . K 4 HOH 4 2004 2004 HOH HOH B . K 4 HOH 5 2005 2005 HOH HOH B . K 4 HOH 6 2006 2006 HOH HOH B . K 4 HOH 7 2007 2007 HOH HOH B . K 4 HOH 8 2008 2008 HOH HOH B . K 4 HOH 9 2009 2009 HOH HOH B . K 4 HOH 10 2010 2010 HOH HOH B . K 4 HOH 11 2011 2011 HOH HOH B . K 4 HOH 12 2012 2012 HOH HOH B . K 4 HOH 13 2013 2013 HOH HOH B . K 4 HOH 14 2014 2014 HOH HOH B . K 4 HOH 15 2015 2015 HOH HOH B . K 4 HOH 16 2016 2016 HOH HOH B . K 4 HOH 17 2017 2017 HOH HOH B . K 4 HOH 18 2018 2018 HOH HOH B . K 4 HOH 19 2019 2019 HOH HOH B . K 4 HOH 20 2020 2020 HOH HOH B . K 4 HOH 21 2021 2021 HOH HOH B . K 4 HOH 22 2022 2022 HOH HOH B . K 4 HOH 23 2023 2023 HOH HOH B . K 4 HOH 24 2024 2024 HOH HOH B . K 4 HOH 25 2025 2025 HOH HOH B . K 4 HOH 26 2026 2026 HOH HOH B . K 4 HOH 27 2027 2027 HOH HOH B . K 4 HOH 28 2028 2028 HOH HOH B . K 4 HOH 29 2029 2029 HOH HOH B . K 4 HOH 30 2030 2030 HOH HOH B . K 4 HOH 31 2031 2031 HOH HOH B . K 4 HOH 32 2032 2032 HOH HOH B . K 4 HOH 33 2033 2033 HOH HOH B . K 4 HOH 34 2034 2034 HOH HOH B . K 4 HOH 35 2035 2035 HOH HOH B . K 4 HOH 36 2036 2036 HOH HOH B . K 4 HOH 37 2037 2037 HOH HOH B . K 4 HOH 38 2038 2038 HOH HOH B . K 4 HOH 39 2039 2039 HOH HOH B . K 4 HOH 40 2040 2040 HOH HOH B . K 4 HOH 41 2041 2041 HOH HOH B . K 4 HOH 42 2042 2042 HOH HOH B . K 4 HOH 43 2043 2043 HOH HOH B . K 4 HOH 44 2044 2044 HOH HOH B . K 4 HOH 45 2045 2045 HOH HOH B . K 4 HOH 46 2046 2046 HOH HOH B . K 4 HOH 47 2047 2047 HOH HOH B . K 4 HOH 48 2048 2048 HOH HOH B . K 4 HOH 49 2049 2049 HOH HOH B . K 4 HOH 50 2050 2050 HOH HOH B . K 4 HOH 51 2051 2051 HOH HOH B . K 4 HOH 52 2052 2052 HOH HOH B . K 4 HOH 53 2053 2053 HOH HOH B . K 4 HOH 54 2054 2054 HOH HOH B . K 4 HOH 55 2055 2055 HOH HOH B . K 4 HOH 56 2056 2056 HOH HOH B . K 4 HOH 57 2057 2057 HOH HOH B . K 4 HOH 58 2058 2058 HOH HOH B . L 4 HOH 1 2001 2001 HOH HOH C . L 4 HOH 2 2002 2002 HOH HOH C . L 4 HOH 3 2003 2003 HOH HOH C . L 4 HOH 4 2004 2004 HOH HOH C . L 4 HOH 5 2005 2005 HOH HOH C . L 4 HOH 6 2006 2006 HOH HOH C . L 4 HOH 7 2007 2007 HOH HOH C . L 4 HOH 8 2008 2008 HOH HOH C . L 4 HOH 9 2009 2009 HOH HOH C . L 4 HOH 10 2010 2010 HOH HOH C . L 4 HOH 11 2011 2011 HOH HOH C . L 4 HOH 12 2012 2012 HOH HOH C . L 4 HOH 13 2013 2013 HOH HOH C . L 4 HOH 14 2014 2014 HOH HOH C . L 4 HOH 15 2015 2015 HOH HOH C . L 4 HOH 16 2016 2016 HOH HOH C . L 4 HOH 17 2017 2017 HOH HOH C . L 4 HOH 18 2018 2018 HOH HOH C . L 4 HOH 19 2019 2019 HOH HOH C . L 4 HOH 20 2020 2020 HOH HOH C . L 4 HOH 21 2021 2021 HOH HOH C . L 4 HOH 22 2022 2022 HOH HOH C . L 4 HOH 23 2023 2023 HOH HOH C . L 4 HOH 24 2024 2024 HOH HOH C . L 4 HOH 25 2025 2025 HOH HOH C . L 4 HOH 26 2026 2026 HOH HOH C . L 4 HOH 27 2027 2027 HOH HOH C . L 4 HOH 28 2028 2028 HOH HOH C . L 4 HOH 29 2029 2029 HOH HOH C . L 4 HOH 30 2030 2030 HOH HOH C . L 4 HOH 31 2031 2031 HOH HOH C . L 4 HOH 32 2032 2032 HOH HOH C . L 4 HOH 33 2033 2033 HOH HOH C . L 4 HOH 34 2034 2034 HOH HOH C . L 4 HOH 35 2035 2035 HOH HOH C . L 4 HOH 36 2036 2036 HOH HOH C . L 4 HOH 37 2037 2037 HOH HOH C . L 4 HOH 38 2038 2038 HOH HOH C . L 4 HOH 39 2039 2039 HOH HOH C . L 4 HOH 40 2040 2040 HOH HOH C . L 4 HOH 41 2041 2041 HOH HOH C . L 4 HOH 42 2042 2042 HOH HOH C . L 4 HOH 43 2043 2043 HOH HOH C . L 4 HOH 44 2044 2044 HOH HOH C . # _pdbx_molecule_features.prd_id PRD_900036 _pdbx_molecule_features.name 'H type 2 antigen, beta anomer' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antigen _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900036 D 2 PRD_900036 E 3 PRD_900036 F 4 PRD_900036 G 5 PRD_900036 H # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7020 ? 1 MORE 7.8 ? 1 'SSA (A^2)' 11370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-21 2 'Structure model' 1 1 2012-02-15 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-12-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' Other 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' database_PDB_caveat 4 3 'Structure model' entity 5 3 'Structure model' entity_name_com 6 3 'Structure model' pdbx_branch_scheme 7 3 'Structure model' pdbx_chem_comp_identifier 8 3 'Structure model' pdbx_database_status 9 3 'Structure model' pdbx_entity_branch 10 3 'Structure model' pdbx_entity_branch_descriptor 11 3 'Structure model' pdbx_entity_branch_link 12 3 'Structure model' pdbx_entity_branch_list 13 3 'Structure model' pdbx_entity_nonpoly 14 3 'Structure model' pdbx_molecule_features 15 3 'Structure model' pdbx_nonpoly_scheme 16 3 'Structure model' pdbx_struct_assembly_gen 17 3 'Structure model' pdbx_validate_chiral 18 3 'Structure model' struct_asym 19 3 'Structure model' struct_conn 20 3 'Structure model' struct_site 21 3 'Structure model' struct_site_gen 22 4 'Structure model' chem_comp 23 4 'Structure model' chem_comp_atom 24 4 'Structure model' chem_comp_bond 25 4 'Structure model' database_2 26 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_database_status.status_code_sf' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 19 3 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 20 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_chem_comp.pdbx_synonyms' 28 4 'Structure model' '_database_2.pdbx_DOI' 29 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 28 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 28 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 28 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.14 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 6.94 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 22 ? ? 47.01 24.42 2 1 SER A 32 ? ? -131.70 -106.88 3 1 SER B 32 ? ? -127.84 -93.34 4 1 ASP B 77 ? ? -144.52 50.82 5 1 SER C 32 ? ? -120.99 -102.11 6 1 SER C 55 ? ? 118.98 -53.09 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PHE _pdbx_validate_peptide_omega.auth_asym_id_1 C _pdbx_validate_peptide_omega.auth_seq_id_1 39 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 C _pdbx_validate_peptide_omega.auth_seq_id_2 40 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 147.10 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id F _pdbx_validate_chiral.auth_comp_id GAL _pdbx_validate_chiral.auth_seq_id 2 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id C _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2044 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.24 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FUC C1 C N R 88 FUC C2 C N S 89 FUC C3 C N R 90 FUC C4 C N S 91 FUC C5 C N S 92 FUC C6 C N N 93 FUC O1 O N N 94 FUC O2 O N N 95 FUC O3 O N N 96 FUC O4 O N N 97 FUC O5 O N N 98 FUC H1 H N N 99 FUC H2 H N N 100 FUC H3 H N N 101 FUC H4 H N N 102 FUC H5 H N N 103 FUC H61 H N N 104 FUC H62 H N N 105 FUC H63 H N N 106 FUC HO1 H N N 107 FUC HO2 H N N 108 FUC HO3 H N N 109 FUC HO4 H N N 110 GAL C1 C N R 111 GAL C2 C N R 112 GAL C3 C N S 113 GAL C4 C N R 114 GAL C5 C N R 115 GAL C6 C N N 116 GAL O1 O N N 117 GAL O2 O N N 118 GAL O3 O N N 119 GAL O4 O N N 120 GAL O5 O N N 121 GAL O6 O N N 122 GAL H1 H N N 123 GAL H2 H N N 124 GAL H3 H N N 125 GAL H4 H N N 126 GAL H5 H N N 127 GAL H61 H N N 128 GAL H62 H N N 129 GAL HO1 H N N 130 GAL HO2 H N N 131 GAL HO3 H N N 132 GAL HO4 H N N 133 GAL HO6 H N N 134 GLN N N N N 135 GLN CA C N S 136 GLN C C N N 137 GLN O O N N 138 GLN CB C N N 139 GLN CG C N N 140 GLN CD C N N 141 GLN OE1 O N N 142 GLN NE2 N N N 143 GLN OXT O N N 144 GLN H H N N 145 GLN H2 H N N 146 GLN HA H N N 147 GLN HB2 H N N 148 GLN HB3 H N N 149 GLN HG2 H N N 150 GLN HG3 H N N 151 GLN HE21 H N N 152 GLN HE22 H N N 153 GLN HXT H N N 154 GLU N N N N 155 GLU CA C N S 156 GLU C C N N 157 GLU O O N N 158 GLU CB C N N 159 GLU CG C N N 160 GLU CD C N N 161 GLU OE1 O N N 162 GLU OE2 O N N 163 GLU OXT O N N 164 GLU H H N N 165 GLU H2 H N N 166 GLU HA H N N 167 GLU HB2 H N N 168 GLU HB3 H N N 169 GLU HG2 H N N 170 GLU HG3 H N N 171 GLU HE2 H N N 172 GLU HXT H N N 173 GLY N N N N 174 GLY CA C N N 175 GLY C C N N 176 GLY O O N N 177 GLY OXT O N N 178 GLY H H N N 179 GLY H2 H N N 180 GLY HA2 H N N 181 GLY HA3 H N N 182 GLY HXT H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 NAG C1 C N R 297 NAG C2 C N R 298 NAG C3 C N R 299 NAG C4 C N S 300 NAG C5 C N R 301 NAG C6 C N N 302 NAG C7 C N N 303 NAG C8 C N N 304 NAG N2 N N N 305 NAG O1 O N N 306 NAG O3 O N N 307 NAG O4 O N N 308 NAG O5 O N N 309 NAG O6 O N N 310 NAG O7 O N N 311 NAG H1 H N N 312 NAG H2 H N N 313 NAG H3 H N N 314 NAG H4 H N N 315 NAG H5 H N N 316 NAG H61 H N N 317 NAG H62 H N N 318 NAG H81 H N N 319 NAG H82 H N N 320 NAG H83 H N N 321 NAG HN2 H N N 322 NAG HO1 H N N 323 NAG HO3 H N N 324 NAG HO4 H N N 325 NAG HO6 H N N 326 PHE N N N N 327 PHE CA C N S 328 PHE C C N N 329 PHE O O N N 330 PHE CB C N N 331 PHE CG C Y N 332 PHE CD1 C Y N 333 PHE CD2 C Y N 334 PHE CE1 C Y N 335 PHE CE2 C Y N 336 PHE CZ C Y N 337 PHE OXT O N N 338 PHE H H N N 339 PHE H2 H N N 340 PHE HA H N N 341 PHE HB2 H N N 342 PHE HB3 H N N 343 PHE HD1 H N N 344 PHE HD2 H N N 345 PHE HE1 H N N 346 PHE HE2 H N N 347 PHE HZ H N N 348 PHE HXT H N N 349 PRO N N N N 350 PRO CA C N S 351 PRO C C N N 352 PRO O O N N 353 PRO CB C N N 354 PRO CG C N N 355 PRO CD C N N 356 PRO OXT O N N 357 PRO H H N N 358 PRO HA H N N 359 PRO HB2 H N N 360 PRO HB3 H N N 361 PRO HG2 H N N 362 PRO HG3 H N N 363 PRO HD2 H N N 364 PRO HD3 H N N 365 PRO HXT H N N 366 SER N N N N 367 SER CA C N S 368 SER C C N N 369 SER O O N N 370 SER CB C N N 371 SER OG O N N 372 SER OXT O N N 373 SER H H N N 374 SER H2 H N N 375 SER HA H N N 376 SER HB2 H N N 377 SER HB3 H N N 378 SER HG H N N 379 SER HXT H N N 380 THR N N N N 381 THR CA C N S 382 THR C C N N 383 THR O O N N 384 THR CB C N R 385 THR OG1 O N N 386 THR CG2 C N N 387 THR OXT O N N 388 THR H H N N 389 THR H2 H N N 390 THR HA H N N 391 THR HB H N N 392 THR HG1 H N N 393 THR HG21 H N N 394 THR HG22 H N N 395 THR HG23 H N N 396 THR HXT H N N 397 TRP N N N N 398 TRP CA C N S 399 TRP C C N N 400 TRP O O N N 401 TRP CB C N N 402 TRP CG C Y N 403 TRP CD1 C Y N 404 TRP CD2 C Y N 405 TRP NE1 N Y N 406 TRP CE2 C Y N 407 TRP CE3 C Y N 408 TRP CZ2 C Y N 409 TRP CZ3 C Y N 410 TRP CH2 C Y N 411 TRP OXT O N N 412 TRP H H N N 413 TRP H2 H N N 414 TRP HA H N N 415 TRP HB2 H N N 416 TRP HB3 H N N 417 TRP HD1 H N N 418 TRP HE1 H N N 419 TRP HE3 H N N 420 TRP HZ2 H N N 421 TRP HZ3 H N N 422 TRP HH2 H N N 423 TRP HXT H N N 424 TYR N N N N 425 TYR CA C N S 426 TYR C C N N 427 TYR O O N N 428 TYR CB C N N 429 TYR CG C Y N 430 TYR CD1 C Y N 431 TYR CD2 C Y N 432 TYR CE1 C Y N 433 TYR CE2 C Y N 434 TYR CZ C Y N 435 TYR OH O N N 436 TYR OXT O N N 437 TYR H H N N 438 TYR H2 H N N 439 TYR HA H N N 440 TYR HB2 H N N 441 TYR HB3 H N N 442 TYR HD1 H N N 443 TYR HD2 H N N 444 TYR HE1 H N N 445 TYR HE2 H N N 446 TYR HH H N N 447 TYR HXT H N N 448 VAL N N N N 449 VAL CA C N S 450 VAL C C N N 451 VAL O O N N 452 VAL CB C N N 453 VAL CG1 C N N 454 VAL CG2 C N N 455 VAL OXT O N N 456 VAL H H N N 457 VAL H2 H N N 458 VAL HA H N N 459 VAL HB H N N 460 VAL HG11 H N N 461 VAL HG12 H N N 462 VAL HG13 H N N 463 VAL HG21 H N N 464 VAL HG22 H N N 465 VAL HG23 H N N 466 VAL HXT H N N 467 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FUC C1 C2 sing N N 83 FUC C1 O1 sing N N 84 FUC C1 O5 sing N N 85 FUC C1 H1 sing N N 86 FUC C2 C3 sing N N 87 FUC C2 O2 sing N N 88 FUC C2 H2 sing N N 89 FUC C3 C4 sing N N 90 FUC C3 O3 sing N N 91 FUC C3 H3 sing N N 92 FUC C4 C5 sing N N 93 FUC C4 O4 sing N N 94 FUC C4 H4 sing N N 95 FUC C5 C6 sing N N 96 FUC C5 O5 sing N N 97 FUC C5 H5 sing N N 98 FUC C6 H61 sing N N 99 FUC C6 H62 sing N N 100 FUC C6 H63 sing N N 101 FUC O1 HO1 sing N N 102 FUC O2 HO2 sing N N 103 FUC O3 HO3 sing N N 104 FUC O4 HO4 sing N N 105 GAL C1 C2 sing N N 106 GAL C1 O1 sing N N 107 GAL C1 O5 sing N N 108 GAL C1 H1 sing N N 109 GAL C2 C3 sing N N 110 GAL C2 O2 sing N N 111 GAL C2 H2 sing N N 112 GAL C3 C4 sing N N 113 GAL C3 O3 sing N N 114 GAL C3 H3 sing N N 115 GAL C4 C5 sing N N 116 GAL C4 O4 sing N N 117 GAL C4 H4 sing N N 118 GAL C5 C6 sing N N 119 GAL C5 O5 sing N N 120 GAL C5 H5 sing N N 121 GAL C6 O6 sing N N 122 GAL C6 H61 sing N N 123 GAL C6 H62 sing N N 124 GAL O1 HO1 sing N N 125 GAL O2 HO2 sing N N 126 GAL O3 HO3 sing N N 127 GAL O4 HO4 sing N N 128 GAL O6 HO6 sing N N 129 GLN N CA sing N N 130 GLN N H sing N N 131 GLN N H2 sing N N 132 GLN CA C sing N N 133 GLN CA CB sing N N 134 GLN CA HA sing N N 135 GLN C O doub N N 136 GLN C OXT sing N N 137 GLN CB CG sing N N 138 GLN CB HB2 sing N N 139 GLN CB HB3 sing N N 140 GLN CG CD sing N N 141 GLN CG HG2 sing N N 142 GLN CG HG3 sing N N 143 GLN CD OE1 doub N N 144 GLN CD NE2 sing N N 145 GLN NE2 HE21 sing N N 146 GLN NE2 HE22 sing N N 147 GLN OXT HXT sing N N 148 GLU N CA sing N N 149 GLU N H sing N N 150 GLU N H2 sing N N 151 GLU CA C sing N N 152 GLU CA CB sing N N 153 GLU CA HA sing N N 154 GLU C O doub N N 155 GLU C OXT sing N N 156 GLU CB CG sing N N 157 GLU CB HB2 sing N N 158 GLU CB HB3 sing N N 159 GLU CG CD sing N N 160 GLU CG HG2 sing N N 161 GLU CG HG3 sing N N 162 GLU CD OE1 doub N N 163 GLU CD OE2 sing N N 164 GLU OE2 HE2 sing N N 165 GLU OXT HXT sing N N 166 GLY N CA sing N N 167 GLY N H sing N N 168 GLY N H2 sing N N 169 GLY CA C sing N N 170 GLY CA HA2 sing N N 171 GLY CA HA3 sing N N 172 GLY C O doub N N 173 GLY C OXT sing N N 174 GLY OXT HXT sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 ILE N CA sing N N 199 ILE N H sing N N 200 ILE N H2 sing N N 201 ILE CA C sing N N 202 ILE CA CB sing N N 203 ILE CA HA sing N N 204 ILE C O doub N N 205 ILE C OXT sing N N 206 ILE CB CG1 sing N N 207 ILE CB CG2 sing N N 208 ILE CB HB sing N N 209 ILE CG1 CD1 sing N N 210 ILE CG1 HG12 sing N N 211 ILE CG1 HG13 sing N N 212 ILE CG2 HG21 sing N N 213 ILE CG2 HG22 sing N N 214 ILE CG2 HG23 sing N N 215 ILE CD1 HD11 sing N N 216 ILE CD1 HD12 sing N N 217 ILE CD1 HD13 sing N N 218 ILE OXT HXT sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 MET N CA sing N N 265 MET N H sing N N 266 MET N H2 sing N N 267 MET CA C sing N N 268 MET CA CB sing N N 269 MET CA HA sing N N 270 MET C O doub N N 271 MET C OXT sing N N 272 MET CB CG sing N N 273 MET CB HB2 sing N N 274 MET CB HB3 sing N N 275 MET CG SD sing N N 276 MET CG HG2 sing N N 277 MET CG HG3 sing N N 278 MET SD CE sing N N 279 MET CE HE1 sing N N 280 MET CE HE2 sing N N 281 MET CE HE3 sing N N 282 MET OXT HXT sing N N 283 NAG C1 C2 sing N N 284 NAG C1 O1 sing N N 285 NAG C1 O5 sing N N 286 NAG C1 H1 sing N N 287 NAG C2 C3 sing N N 288 NAG C2 N2 sing N N 289 NAG C2 H2 sing N N 290 NAG C3 C4 sing N N 291 NAG C3 O3 sing N N 292 NAG C3 H3 sing N N 293 NAG C4 C5 sing N N 294 NAG C4 O4 sing N N 295 NAG C4 H4 sing N N 296 NAG C5 C6 sing N N 297 NAG C5 O5 sing N N 298 NAG C5 H5 sing N N 299 NAG C6 O6 sing N N 300 NAG C6 H61 sing N N 301 NAG C6 H62 sing N N 302 NAG C7 C8 sing N N 303 NAG C7 N2 sing N N 304 NAG C7 O7 doub N N 305 NAG C8 H81 sing N N 306 NAG C8 H82 sing N N 307 NAG C8 H83 sing N N 308 NAG N2 HN2 sing N N 309 NAG O1 HO1 sing N N 310 NAG O3 HO3 sing N N 311 NAG O4 HO4 sing N N 312 NAG O6 HO6 sing N N 313 PHE N CA sing N N 314 PHE N H sing N N 315 PHE N H2 sing N N 316 PHE CA C sing N N 317 PHE CA CB sing N N 318 PHE CA HA sing N N 319 PHE C O doub N N 320 PHE C OXT sing N N 321 PHE CB CG sing N N 322 PHE CB HB2 sing N N 323 PHE CB HB3 sing N N 324 PHE CG CD1 doub Y N 325 PHE CG CD2 sing Y N 326 PHE CD1 CE1 sing Y N 327 PHE CD1 HD1 sing N N 328 PHE CD2 CE2 doub Y N 329 PHE CD2 HD2 sing N N 330 PHE CE1 CZ doub Y N 331 PHE CE1 HE1 sing N N 332 PHE CE2 CZ sing Y N 333 PHE CE2 HE2 sing N N 334 PHE CZ HZ sing N N 335 PHE OXT HXT sing N N 336 PRO N CA sing N N 337 PRO N CD sing N N 338 PRO N H sing N N 339 PRO CA C sing N N 340 PRO CA CB sing N N 341 PRO CA HA sing N N 342 PRO C O doub N N 343 PRO C OXT sing N N 344 PRO CB CG sing N N 345 PRO CB HB2 sing N N 346 PRO CB HB3 sing N N 347 PRO CG CD sing N N 348 PRO CG HG2 sing N N 349 PRO CG HG3 sing N N 350 PRO CD HD2 sing N N 351 PRO CD HD3 sing N N 352 PRO OXT HXT sing N N 353 SER N CA sing N N 354 SER N H sing N N 355 SER N H2 sing N N 356 SER CA C sing N N 357 SER CA CB sing N N 358 SER CA HA sing N N 359 SER C O doub N N 360 SER C OXT sing N N 361 SER CB OG sing N N 362 SER CB HB2 sing N N 363 SER CB HB3 sing N N 364 SER OG HG sing N N 365 SER OXT HXT sing N N 366 THR N CA sing N N 367 THR N H sing N N 368 THR N H2 sing N N 369 THR CA C sing N N 370 THR CA CB sing N N 371 THR CA HA sing N N 372 THR C O doub N N 373 THR C OXT sing N N 374 THR CB OG1 sing N N 375 THR CB CG2 sing N N 376 THR CB HB sing N N 377 THR OG1 HG1 sing N N 378 THR CG2 HG21 sing N N 379 THR CG2 HG22 sing N N 380 THR CG2 HG23 sing N N 381 THR OXT HXT sing N N 382 TRP N CA sing N N 383 TRP N H sing N N 384 TRP N H2 sing N N 385 TRP CA C sing N N 386 TRP CA CB sing N N 387 TRP CA HA sing N N 388 TRP C O doub N N 389 TRP C OXT sing N N 390 TRP CB CG sing N N 391 TRP CB HB2 sing N N 392 TRP CB HB3 sing N N 393 TRP CG CD1 doub Y N 394 TRP CG CD2 sing Y N 395 TRP CD1 NE1 sing Y N 396 TRP CD1 HD1 sing N N 397 TRP CD2 CE2 doub Y N 398 TRP CD2 CE3 sing Y N 399 TRP NE1 CE2 sing Y N 400 TRP NE1 HE1 sing N N 401 TRP CE2 CZ2 sing Y N 402 TRP CE3 CZ3 doub Y N 403 TRP CE3 HE3 sing N N 404 TRP CZ2 CH2 doub Y N 405 TRP CZ2 HZ2 sing N N 406 TRP CZ3 CH2 sing Y N 407 TRP CZ3 HZ3 sing N N 408 TRP CH2 HH2 sing N N 409 TRP OXT HXT sing N N 410 TYR N CA sing N N 411 TYR N H sing N N 412 TYR N H2 sing N N 413 TYR CA C sing N N 414 TYR CA CB sing N N 415 TYR CA HA sing N N 416 TYR C O doub N N 417 TYR C OXT sing N N 418 TYR CB CG sing N N 419 TYR CB HB2 sing N N 420 TYR CB HB3 sing N N 421 TYR CG CD1 doub Y N 422 TYR CG CD2 sing Y N 423 TYR CD1 CE1 sing Y N 424 TYR CD1 HD1 sing N N 425 TYR CD2 CE2 doub Y N 426 TYR CD2 HD2 sing N N 427 TYR CE1 CZ doub Y N 428 TYR CE1 HE1 sing N N 429 TYR CE2 CZ sing Y N 430 TYR CE2 HE2 sing N N 431 TYR CZ OH sing N N 432 TYR OH HH sing N N 433 TYR OXT HXT sing N N 434 VAL N CA sing N N 435 VAL N H sing N N 436 VAL N H2 sing N N 437 VAL CA C sing N N 438 VAL CA CB sing N N 439 VAL CA HA sing N N 440 VAL C O doub N N 441 VAL C OXT sing N N 442 VAL CB CG1 sing N N 443 VAL CB CG2 sing N N 444 VAL CB HB sing N N 445 VAL CG1 HG11 sing N N 446 VAL CG1 HG12 sing N N 447 VAL CG1 HG13 sing N N 448 VAL CG2 HG21 sing N N 449 VAL CG2 HG22 sing N N 450 VAL CG2 HG23 sing N N 451 VAL OXT HXT sing N N 452 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 2 NAG 1 D NAG 1 A NAG 389 n D 2 GAL 2 D GAL 2 A GAL 390 n D 2 FUC 3 D FUC 3 A FUC 391 n E 2 NAG 1 E NAG 1 A NAG 399 n E 2 GAL 2 E GAL 2 A GAL 400 n E 2 FUC 3 E FUC 3 A FUC 401 n F 2 NAG 1 F NAG 1 B NAG 389 n F 2 GAL 2 F GAL 2 B GAL 390 n F 2 FUC 3 F FUC 3 B FUC 391 n G 2 NAG 1 G NAG 1 C NAG 389 n G 2 GAL 2 G GAL 2 C GAL 390 n G 2 FUC 3 G FUC 3 C FUC 391 n H 2 NAG 1 H NAG 1 C NAG 399 n H 2 GAL 2 H GAL 2 C GAL 400 n H 2 FUC 3 H FUC 3 C FUC 401 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 LFucpa1-2DGalpb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a4-b1_b2-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 NAG O4 HO4 sing ? 2 2 3 FUC C1 O1 2 GAL O2 HO2 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GAL 2 n 2 FUC 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 alpha-L-fucopyranose FUC 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3WZ0 _pdbx_initial_refinement_model.details 'PDB ENTRY 3WZ0' #