HEADER GENE REGULATION 28-FEB-09 3A02 TITLE CRYSTAL STRUCTURE OF ARISTALESS HOMEODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN ARISTALESS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX, RESIDUES 91-146; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: AL, CG3935; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOMEODOMAIN, DEVELOPMENTAL PROTEIN, DNA-BINDING, HOMEOBOX, NUCLEUS, KEYWDS 2 GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR K.MIYAZONO,K.NAGATA,K.SAIGO,T.KOJIMA,M.TANOKURA REVDAT 4 01-NOV-23 3A02 1 REMARK SEQADV LINK REVDAT 3 19-MAY-10 3A02 1 JRNL REVDAT 2 28-APR-10 3A02 1 JRNL REVDAT 1 09-MAR-10 3A02 0 JRNL AUTH K.MIYAZONO,Y.ZHI,Y.TAKAMURA,K.NAGATA,K.SAIGO,T.KOJIMA, JRNL AUTH 2 M.TANOKURA JRNL TITL COOPERATIVE DNA-BINDING AND SEQUENCE-RECOGNITION MECHANISM JRNL TITL 2 OF ARISTALESS AND CLAWLESS JRNL REF EMBO J. V. 29 1613 2010 JRNL REFN ISSN 0261-4189 JRNL PMID 20389279 JRNL DOI 10.1038/EMBOJ.2010.53 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 32228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.1930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.025 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 444 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 597 ; 1.943 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 50 ; 4.300 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ;27.393 ;22.174 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 83 ;13.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;17.137 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 64 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 331 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 254 ; 0.770 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 411 ; 1.595 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 190 ; 2.941 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 186 ; 3.961 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5430 24.6270 0.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.0291 REMARK 3 T33: 0.1087 T12: -0.0315 REMARK 3 T13: -0.0931 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 9.1266 L22: 5.2073 REMARK 3 L33: 12.7429 L12: 1.2876 REMARK 3 L13: -1.0491 L23: 1.5223 REMARK 3 S TENSOR REMARK 3 S11: -0.4326 S12: -0.0940 S13: 0.5634 REMARK 3 S21: -0.6683 S22: 0.3067 S23: 0.6483 REMARK 3 S31: -0.2748 S32: -0.1840 S33: 0.1260 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2180 18.4870 -0.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0352 REMARK 3 T33: 0.0278 T12: -0.0305 REMARK 3 T13: -0.0008 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.1840 L22: 0.1460 REMARK 3 L33: 1.2369 L12: -0.3797 REMARK 3 L13: 1.0510 L23: -0.2644 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: 0.0237 S13: -0.0116 REMARK 3 S21: 0.0097 S22: -0.0008 S23: 0.0005 REMARK 3 S31: 0.0262 S32: 0.0305 S33: -0.0178 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1430 11.1230 0.0700 REMARK 3 T TENSOR REMARK 3 T11: 0.0385 T22: 0.0307 REMARK 3 T33: 0.0526 T12: -0.0184 REMARK 3 T13: -0.0068 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.4728 L22: 1.3159 REMARK 3 L33: 2.8900 L12: -1.7870 REMARK 3 L13: -0.7584 L23: 0.3158 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.0868 S13: -0.0427 REMARK 3 S21: 0.0003 S22: -0.0548 S23: 0.0214 REMARK 3 S31: 0.0552 S32: -0.0324 S33: 0.0574 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0460 6.5890 5.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.0563 REMARK 3 T33: 0.0333 T12: -0.0761 REMARK 3 T13: 0.0229 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.3775 L22: 4.4731 REMARK 3 L33: 4.3492 L12: -1.0477 REMARK 3 L13: 0.5983 L23: 0.6235 REMARK 3 S TENSOR REMARK 3 S11: 0.1611 S12: -0.0478 S13: 0.0321 REMARK 3 S21: -0.3075 S22: 0.0660 S23: -0.2642 REMARK 3 S31: 0.4257 S32: -0.1239 S33: -0.2271 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9960 11.8710 12.0060 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.0360 REMARK 3 T33: 0.0349 T12: -0.0151 REMARK 3 T13: -0.0066 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.3223 L22: 4.7716 REMARK 3 L33: 0.2445 L12: 3.0028 REMARK 3 L13: 0.2996 L23: 0.1312 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0893 S13: -0.1366 REMARK 3 S21: -0.0420 S22: 0.0076 S23: -0.1655 REMARK 3 S31: 0.0889 S32: -0.0116 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5840 17.8510 6.6090 REMARK 3 T TENSOR REMARK 3 T11: 0.0335 T22: 0.0528 REMARK 3 T33: 0.0320 T12: -0.0238 REMARK 3 T13: 0.0090 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.8549 L22: 10.2672 REMARK 3 L33: 4.7545 L12: 2.8841 REMARK 3 L13: -3.9536 L23: -5.3216 REMARK 3 S TENSOR REMARK 3 S11: -0.2501 S12: 0.1528 S13: 0.0287 REMARK 3 S21: -0.1796 S22: 0.2268 S23: -0.2114 REMARK 3 S31: 0.2440 S32: -0.1923 S33: 0.0232 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4780 21.1950 9.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0572 REMARK 3 T33: 0.0381 T12: -0.0112 REMARK 3 T13: -0.0098 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.2998 L22: 0.7702 REMARK 3 L33: 3.8482 L12: 0.7164 REMARK 3 L13: -1.9977 L23: -0.6673 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.0541 S13: 0.0434 REMARK 3 S21: -0.0114 S22: 0.0363 S23: -0.0173 REMARK 3 S31: -0.0662 S32: -0.1687 S33: -0.0523 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9540 16.0060 9.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0496 REMARK 3 T33: 0.0337 T12: -0.0120 REMARK 3 T13: -0.0063 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.8748 L22: 1.2540 REMARK 3 L33: 1.5481 L12: 1.0562 REMARK 3 L13: 1.1964 L23: -0.0417 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: 0.0753 S13: 0.0038 REMARK 3 S21: -0.0097 S22: 0.0544 S23: -0.0071 REMARK 3 S31: -0.0629 S32: 0.0259 S33: 0.0148 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1090 9.7480 5.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.0375 T22: 0.0544 REMARK 3 T33: 0.0330 T12: -0.0243 REMARK 3 T13: -0.0092 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.3791 L22: 1.2215 REMARK 3 L33: 3.1933 L12: -0.6760 REMARK 3 L13: 0.5639 L23: -0.8368 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.0098 S13: -0.0234 REMARK 3 S21: -0.0384 S22: 0.0003 S23: 0.0477 REMARK 3 S31: 0.1452 S32: -0.1207 S33: -0.0247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000028641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1FJL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M CADMIUM CHLORIDE, REMARK 280 0.1M ACETATE, PH 4.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.65333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.32667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.32667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.65333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 3 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 87 REMARK 465 SER A 88 REMARK 465 HIS A 89 REMARK 465 MET A 90 REMARK 465 LYS A 142 REMARK 465 GLN A 143 REMARK 465 GLU A 144 REMARK 465 LYS A 145 REMARK 465 VAL A 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 113 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 117 OE1 OE2 REMARK 470 ARG A 128 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 111 O HOH A 84 2.06 REMARK 500 O HOH A 34 O HOH A 82 2.13 REMARK 500 O HOH A 14 O HOH A 78 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 65 O HOH A 78 3665 2.13 REMARK 500 O HOH A 66 O HOH A 81 6765 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 106 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 MET A 120 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 1 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 126 OE1 REMARK 620 2 GLU A 126 OE2 54.6 REMARK 620 3 GLN A 130 OE1 111.1 85.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A01 RELATED DB: PDB REMARK 900 ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA REMARK 900 RELATED ID: 3A03 RELATED DB: PDB REMARK 900 HOX11L1 HOMEODOMAIN DBREF 3A02 A 91 146 UNP Q06453 AL_DROME 91 146 SEQADV 3A02 GLY A 87 UNP Q06453 EXPRESSION TAG SEQADV 3A02 SER A 88 UNP Q06453 EXPRESSION TAG SEQADV 3A02 HIS A 89 UNP Q06453 EXPRESSION TAG SEQADV 3A02 MET A 90 UNP Q06453 EXPRESSION TAG SEQRES 1 A 60 GLY SER HIS MET THR PHE THR SER PHE GLN LEU GLU GLU SEQRES 2 A 60 LEU GLU LYS ALA PHE SER ARG THR HIS TYR PRO ASP VAL SEQRES 3 A 60 PHE THR ARG GLU GLU LEU ALA MET LYS ILE GLY LEU THR SEQRES 4 A 60 GLU ALA ARG ILE GLN VAL TRP PHE GLN ASN ARG ARG ALA SEQRES 5 A 60 LYS TRP ARG LYS GLN GLU LYS VAL HET CD A 1 1 HET CL A 147 1 HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CD CD 2+ FORMUL 3 CL CL 1- FORMUL 4 HOH *99(H2 O) HELIX 1 1 THR A 93 THR A 107 1 15 HELIX 2 2 ASP A 111 GLY A 123 1 13 HELIX 3 3 THR A 125 ARG A 141 1 17 LINK CD CD A 1 OE1 GLU A 126 1555 1555 2.27 LINK CD CD A 1 OE2 GLU A 126 1555 1555 2.55 LINK CD CD A 1 OE1 GLN A 130 1555 1555 2.27 SITE 1 AC1 4 GLU A 116 GLU A 126 GLN A 130 CL A 147 SITE 1 AC2 3 CD A 1 GLU A 126 GLN A 130 CRYST1 45.810 45.810 48.980 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021829 0.012603 0.000000 0.00000 SCALE2 0.000000 0.025206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020416 0.00000