HEADER HYDROLASE/ANTIBIOTIC 12-JUN-09 3A3I TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 4 (DACB) FROM TITLE 2 HAEMOPHILUS INFLUENZAE, COMPLEXED WITH AMPICILLIN (AIX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-479; COMPND 5 SYNONYM: PBP4; COMPND 6 EC: 3.4.16.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: DACB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR/PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PENICILLIN BINDING PROTEIN 4, PBP4, DACB, HYDROLASE, HYDROLASE- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.KAWAI,D.I.ROPER,S.-Y.PARK,J.R.H.TAME REVDAT 3 30-OCT-24 3A3I 1 REMARK SEQADV LINK REVDAT 2 20-NOV-13 3A3I 1 JRNL VERSN REVDAT 1 22-DEC-09 3A3I 0 JRNL AUTH F.KAWAI,T.B.CLARKE,D.I.ROPER,G.-J.HAN,K.Y.HWANG,S.UNZAI, JRNL AUTH 2 E.OBAYASHI,S.-Y.PARK,J.R.H.TAME JRNL TITL CRYSTAL STRUCTURES OF PENICILLIN-BINDING PROTEINS 4 AND 5 JRNL TITL 2 FROM HAEMOPHILUS INFLUENZAE JRNL REF J.MOL.BIOL. V. 396 634 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19958776 JRNL DOI 10.1016/J.JMB.2009.11.055 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3579 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.515 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7194 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9739 ; 2.070 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 904 ; 6.513 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 317 ;38.200 ;25.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1252 ;15.064 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;23.557 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1094 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5416 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4498 ; 1.257 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7219 ; 2.217 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2696 ; 3.613 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2520 ; 5.639 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000028764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 25% (W/V) PEG 6000 REMARK 280 AND 5% (V/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.17150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 457 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 188 NH2 ARG B 242 1.89 REMARK 500 OE1 GLU A 274 O HOH A 673 2.11 REMARK 500 OG SER A 69 O4 AIX A 501 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 68 CA ALA A 68 CB 0.137 REMARK 500 CYS A 180 CB CYS A 180 SG -0.234 REMARK 500 TYR A 477 CD1 TYR A 477 CE1 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 166 CB - CA - C ANGL. DEV. = 7.9 DEGREES REMARK 500 CYS A 180 CB - CA - C ANGL. DEV. = 8.2 DEGREES REMARK 500 CYS B 166 CB - CA - C ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 266 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 88.96 -163.86 REMARK 500 ALA A 68 -142.02 51.93 REMARK 500 ASP A 117 33.35 -140.42 REMARK 500 SER A 151 -157.24 62.60 REMARK 500 ALA A 292 144.59 -172.46 REMARK 500 ASN A 353 30.94 -99.81 REMARK 500 VAL A 398 -54.82 -124.89 REMARK 500 ASN A 416 -62.96 -130.36 REMARK 500 ALA B 68 -142.46 45.68 REMARK 500 GLN B 100 126.73 175.36 REMARK 500 ASP B 115 113.09 -39.60 REMARK 500 SER B 151 -152.35 60.15 REMARK 500 PRO B 191 130.38 -37.13 REMARK 500 ASN B 217 -76.72 -52.84 REMARK 500 PRO B 246 161.63 -39.91 REMARK 500 ASN B 276 37.49 -145.49 REMARK 500 LYS B 297 152.71 -46.84 REMARK 500 SER B 310 64.79 71.06 REMARK 500 LYS B 415 8.61 57.15 REMARK 500 ASN B 416 -59.78 -120.60 REMARK 500 GLU B 457 25.41 85.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AIX A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AIX B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A3D RELATED DB: PDB REMARK 900 RELATED ID: 3A3E RELATED DB: PDB REMARK 900 RELATED ID: 3A3F RELATED DB: PDB REMARK 900 RELATED ID: 3A3J RELATED DB: PDB DBREF 3A3I A 28 479 UNP A8E0K8 A8E0K8_HAEIN 28 479 DBREF 3A3I B 28 479 UNP A8E0K8 A8E0K8_HAEIN 28 479 SEQADV 3A3I MET A 27 UNP A8E0K8 EXPRESSION TAG SEQADV 3A3I MET B 27 UNP A8E0K8 EXPRESSION TAG SEQRES 1 A 453 MET ILE ASN VAL SER ASP LEU THR GLN LYS LEU PRO GLU SEQRES 2 A 453 GLY SER ASN ALA GLY VAL ILE ALA LYS ASN ILE ASN GLN SEQRES 3 A 453 ASN GLN ILE ILE ALA ASP TYR ASN GLY SER THR PHE MET SEQRES 4 A 453 LEU PRO ALA SER THR GLN LYS VAL PHE THR ALA VAL ALA SEQRES 5 A 453 ALA LYS LEU ALA LEU GLY ASP GLN PHE GLN PHE GLU THR SEQRES 6 A 453 ALA LEU LEU SER ASN GLY LYS ILE GLN ASN GLY ASN LEU SEQRES 7 A 453 ASP GLY ASN LEU ILE VAL SER PHE THR GLY ASP PRO ASP SEQRES 8 A 453 LEU THR ARG GLY GLN LEU TYR SER LEU LEU ALA GLU LEU SEQRES 9 A 453 LYS LYS GLN GLY ILE LYS LYS ILE ASN GLY ASP LEU VAL SEQRES 10 A 453 LEU ASP THR SER VAL PHE SER SER HIS ASP ARG GLY LEU SEQRES 11 A 453 GLY TRP ILE TRP ASN ASP LEU THR MET CYS PHE ASN SER SEQRES 12 A 453 PRO PRO ALA ALA ALA ASN ILE ASP ASN ASN CYS PHE TYR SEQRES 13 A 453 ALA GLU LEU ASP ALA ASN LYS ASN PRO GLY GLU ILE VAL SEQRES 14 A 453 LYS ILE ASN VAL PRO ALA GLN PHE PRO ILE GLN VAL PHE SEQRES 15 A 453 GLY GLN VAL TYR VAL ALA ASP SER ASN GLU ALA PRO TYR SEQRES 16 A 453 CYS GLN LEU ASP VAL VAL VAL HIS ASP ASN ASN ARG TYR SEQRES 17 A 453 GLN VAL LYS GLY CYS LEU ALA ARG GLN TYR LYS PRO PHE SEQRES 18 A 453 GLY LEU SER PHE ALA VAL GLN ASN THR ASP ALA TYR ALA SEQRES 19 A 453 ALA ALA ILE ILE GLN ARG GLN LEU ARG LYS LEU GLY ILE SEQRES 20 A 453 GLU PHE ASN GLY LYS VAL LEU LEU PRO GLN LYS PRO GLN SEQRES 21 A 453 GLN GLY GLN LEU LEU ALA LYS HIS LEU SER LYS PRO LEU SEQRES 22 A 453 PRO ASP LEU LEU LYS LYS MET MET LYS LYS SER ASP ASN SEQRES 23 A 453 GLN ILE ALA ASP SER LEU PHE ARG ALA VAL ALA PHE ASN SEQRES 24 A 453 TYR TYR LYS ARG PRO ALA SER PHE GLN LEU GLY THR LEU SEQRES 25 A 453 ALA VAL LYS SER ILE LEU GLN LYS GLN GLY ILE ARG PHE SEQRES 26 A 453 GLY ASN SER ILE LEU ALA ASP GLY SER GLY LEU SER ARG SEQRES 27 A 453 HIS ASN LEU VAL ALA PRO LYS THR MET LEU SER VAL LEU SEQRES 28 A 453 GLU TYR ILE ALA LYS ASN GLU ASP LYS LEU HIS LEU MET SEQRES 29 A 453 GLU THR PHE PRO ILE ALA GLY VAL ASP GLY THR ILE SER SEQRES 30 A 453 GLY ARG GLY GLY LEU ILE SER PRO PRO LEU VAL LYS ASN SEQRES 31 A 453 VAL ILE ALA LYS THR GLY SER LEU LYS GLY VAL TYR ASN SEQRES 32 A 453 LEU ALA GLY PHE MET THR ASN ALA ARG GLY GLU LYS VAL SEQRES 33 A 453 ALA PHE VAL GLN PHE ILE ASN GLY TYR SER THR GLY ASP SEQRES 34 A 453 LEU GLU SER LYS THR LYS ARG ALA PRO LEU VAL GLN PHE SEQRES 35 A 453 GLU ARG ASN LEU TYR ASN GLU LEU TYR LYS TYR SEQRES 1 B 453 MET ILE ASN VAL SER ASP LEU THR GLN LYS LEU PRO GLU SEQRES 2 B 453 GLY SER ASN ALA GLY VAL ILE ALA LYS ASN ILE ASN GLN SEQRES 3 B 453 ASN GLN ILE ILE ALA ASP TYR ASN GLY SER THR PHE MET SEQRES 4 B 453 LEU PRO ALA SER THR GLN LYS VAL PHE THR ALA VAL ALA SEQRES 5 B 453 ALA LYS LEU ALA LEU GLY ASP GLN PHE GLN PHE GLU THR SEQRES 6 B 453 ALA LEU LEU SER ASN GLY LYS ILE GLN ASN GLY ASN LEU SEQRES 7 B 453 ASP GLY ASN LEU ILE VAL SER PHE THR GLY ASP PRO ASP SEQRES 8 B 453 LEU THR ARG GLY GLN LEU TYR SER LEU LEU ALA GLU LEU SEQRES 9 B 453 LYS LYS GLN GLY ILE LYS LYS ILE ASN GLY ASP LEU VAL SEQRES 10 B 453 LEU ASP THR SER VAL PHE SER SER HIS ASP ARG GLY LEU SEQRES 11 B 453 GLY TRP ILE TRP ASN ASP LEU THR MET CYS PHE ASN SER SEQRES 12 B 453 PRO PRO ALA ALA ALA ASN ILE ASP ASN ASN CYS PHE TYR SEQRES 13 B 453 ALA GLU LEU ASP ALA ASN LYS ASN PRO GLY GLU ILE VAL SEQRES 14 B 453 LYS ILE ASN VAL PRO ALA GLN PHE PRO ILE GLN VAL PHE SEQRES 15 B 453 GLY GLN VAL TYR VAL ALA ASP SER ASN GLU ALA PRO TYR SEQRES 16 B 453 CYS GLN LEU ASP VAL VAL VAL HIS ASP ASN ASN ARG TYR SEQRES 17 B 453 GLN VAL LYS GLY CYS LEU ALA ARG GLN TYR LYS PRO PHE SEQRES 18 B 453 GLY LEU SER PHE ALA VAL GLN ASN THR ASP ALA TYR ALA SEQRES 19 B 453 ALA ALA ILE ILE GLN ARG GLN LEU ARG LYS LEU GLY ILE SEQRES 20 B 453 GLU PHE ASN GLY LYS VAL LEU LEU PRO GLN LYS PRO GLN SEQRES 21 B 453 GLN GLY GLN LEU LEU ALA LYS HIS LEU SER LYS PRO LEU SEQRES 22 B 453 PRO ASP LEU LEU LYS LYS MET MET LYS LYS SER ASP ASN SEQRES 23 B 453 GLN ILE ALA ASP SER LEU PHE ARG ALA VAL ALA PHE ASN SEQRES 24 B 453 TYR TYR LYS ARG PRO ALA SER PHE GLN LEU GLY THR LEU SEQRES 25 B 453 ALA VAL LYS SER ILE LEU GLN LYS GLN GLY ILE ARG PHE SEQRES 26 B 453 GLY ASN SER ILE LEU ALA ASP GLY SER GLY LEU SER ARG SEQRES 27 B 453 HIS ASN LEU VAL ALA PRO LYS THR MET LEU SER VAL LEU SEQRES 28 B 453 GLU TYR ILE ALA LYS ASN GLU ASP LYS LEU HIS LEU MET SEQRES 29 B 453 GLU THR PHE PRO ILE ALA GLY VAL ASP GLY THR ILE SER SEQRES 30 B 453 GLY ARG GLY GLY LEU ILE SER PRO PRO LEU VAL LYS ASN SEQRES 31 B 453 VAL ILE ALA LYS THR GLY SER LEU LYS GLY VAL TYR ASN SEQRES 32 B 453 LEU ALA GLY PHE MET THR ASN ALA ARG GLY GLU LYS VAL SEQRES 33 B 453 ALA PHE VAL GLN PHE ILE ASN GLY TYR SER THR GLY ASP SEQRES 34 B 453 LEU GLU SER LYS THR LYS ARG ALA PRO LEU VAL GLN PHE SEQRES 35 B 453 GLU ARG ASN LEU TYR ASN GLU LEU TYR LYS TYR HET AIX A 501 24 HET AIX B 501 24 HETNAM AIX (2R,4S)-2-[(1R)-1-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}- HETNAM 2 AIX 2-OXOETHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC HETNAM 3 AIX ACID HETSYN AIX AMPICILLIN (OPEN FORM) FORMUL 3 AIX 2(C16 H21 N3 O4 S) FORMUL 5 HOH *380(H2 O) HELIX 1 1 ASN A 29 GLN A 35 1 7 HELIX 2 2 PRO A 67 THR A 70 5 4 HELIX 3 3 GLN A 71 LEU A 83 1 13 HELIX 4 4 THR A 119 GLN A 133 1 15 HELIX 5 5 ILE A 159 LEU A 163 5 5 HELIX 6 6 MET A 165 SER A 169 5 5 HELIX 7 7 ILE A 176 ASN A 178 5 3 HELIX 8 8 GLU A 218 CYS A 222 5 5 HELIX 9 9 ASN A 255 LEU A 271 1 17 HELIX 10 10 PRO A 298 SER A 310 1 13 HELIX 11 11 ASP A 311 LYS A 328 1 18 HELIX 12 12 SER A 332 GLN A 347 1 16 HELIX 13 13 ALA A 369 ASN A 383 1 15 HELIX 14 14 ASN A 383 HIS A 388 1 6 HELIX 15 15 LEU A 389 PHE A 393 5 5 HELIX 16 16 ASP A 399 SER A 403 5 5 HELIX 17 17 ARG A 405 ILE A 409 5 5 HELIX 18 18 ARG A 462 TYR A 479 1 18 HELIX 19 19 ASN B 29 GLN B 35 1 7 HELIX 20 20 PRO B 67 THR B 70 5 4 HELIX 21 21 GLN B 71 LEU B 83 1 13 HELIX 22 22 THR B 119 GLN B 133 1 15 HELIX 23 23 ILE B 159 LEU B 163 5 5 HELIX 24 24 MET B 165 SER B 169 5 5 HELIX 25 25 ILE B 176 ASN B 178 5 3 HELIX 26 26 GLU B 218 CYS B 222 5 5 HELIX 27 27 ASN B 255 GLY B 272 1 18 HELIX 28 28 LEU B 299 SER B 310 1 12 HELIX 29 29 ASP B 311 LYS B 328 1 18 HELIX 30 30 SER B 332 GLN B 347 1 16 HELIX 31 31 ALA B 369 ASN B 383 1 15 HELIX 32 32 ASN B 383 HIS B 388 1 6 HELIX 33 33 LEU B 389 PHE B 393 5 5 HELIX 34 34 ASP B 399 SER B 403 5 5 HELIX 35 35 ARG B 405 ILE B 409 5 5 HELIX 36 36 ARG B 462 TYR B 479 1 18 SHEET 1 A 5 GLN A 54 TYR A 59 0 SHEET 2 A 5 ASN A 42 ASN A 49 -1 N ASN A 49 O GLN A 54 SHEET 3 A 5 LYS A 441 ASN A 449 -1 O ASN A 449 N ASN A 42 SHEET 4 A 5 VAL A 427 THR A 435 -1 N MET A 434 O VAL A 442 SHEET 5 A 5 ILE A 418 LEU A 424 -1 N GLY A 422 O ASN A 429 SHEET 1 B 5 VAL A 279 LEU A 280 0 SHEET 2 B 5 LEU A 142 ASP A 145 1 N LEU A 142 O LEU A 280 SHEET 3 B 5 LEU A 108 SER A 111 1 N LEU A 108 O VAL A 143 SHEET 4 B 5 GLU A 90 SER A 95 -1 N LEU A 94 O ILE A 109 SHEET 5 B 5 GLN A 289 LEU A 295 -1 O GLN A 289 N SER A 95 SHEET 1 C 4 ILE A 99 GLN A 100 0 SHEET 2 C 4 ASN A 103 LEU A 104 -1 O ASN A 103 N GLN A 100 SHEET 3 C 4 LYS A 137 ILE A 138 1 O LYS A 137 N LEU A 104 SHEET 4 C 4 GLU A 274 PHE A 275 1 O GLU A 274 N ILE A 138 SHEET 1 D 3 LYS A 196 ASN A 198 0 SHEET 2 D 3 CYS A 180 ASP A 186 -1 N GLU A 184 O ASN A 198 SHEET 3 D 3 PHE A 247 ALA A 252 -1 O PHE A 251 N PHE A 181 SHEET 1 E 3 GLN A 206 PHE A 208 0 SHEET 2 E 3 ARG A 233 ALA A 241 1 O TYR A 234 N GLN A 206 SHEET 3 E 3 TYR A 212 ALA A 214 1 N ALA A 214 O LEU A 240 SHEET 1 F 3 GLN A 206 PHE A 208 0 SHEET 2 F 3 ARG A 233 ALA A 241 1 O TYR A 234 N GLN A 206 SHEET 3 F 3 LEU A 224 HIS A 229 -1 N ASP A 225 O LYS A 237 SHEET 1 G 5 GLN B 54 TYR B 59 0 SHEET 2 G 5 ASN B 42 ASN B 49 -1 N ASN B 49 O GLN B 54 SHEET 3 G 5 LYS B 441 ASN B 449 -1 O PHE B 447 N GLY B 44 SHEET 4 G 5 VAL B 427 THR B 435 -1 N LEU B 430 O GLN B 446 SHEET 5 G 5 ILE B 418 LEU B 424 -1 N GLY B 422 O ASN B 429 SHEET 1 H 5 VAL B 279 LEU B 280 0 SHEET 2 H 5 LEU B 142 ASP B 145 1 N LEU B 142 O LEU B 280 SHEET 3 H 5 LEU B 108 SER B 111 1 N VAL B 110 O VAL B 143 SHEET 4 H 5 GLN B 88 SER B 95 -1 N ALA B 92 O SER B 111 SHEET 5 H 5 GLN B 289 PRO B 298 -1 O LEU B 291 N LEU B 93 SHEET 1 I 3 LYS B 98 GLN B 100 0 SHEET 2 I 3 ASN B 103 ASP B 105 -1 O ASP B 105 N LYS B 98 SHEET 3 I 3 LYS B 137 ILE B 138 1 O LYS B 137 N LEU B 104 SHEET 1 J 3 LYS B 196 ASN B 198 0 SHEET 2 J 3 CYS B 180 ASP B 186 -1 N GLU B 184 O ASN B 198 SHEET 3 J 3 PHE B 247 ALA B 252 -1 O PHE B 247 N LEU B 185 SHEET 1 K 3 GLN B 206 GLY B 209 0 SHEET 2 K 3 ARG B 233 ALA B 241 1 O VAL B 236 N PHE B 208 SHEET 3 K 3 TYR B 212 ALA B 214 1 N ALA B 214 O LEU B 240 SHEET 1 L 3 GLN B 206 GLY B 209 0 SHEET 2 L 3 ARG B 233 ALA B 241 1 O VAL B 236 N PHE B 208 SHEET 3 L 3 LEU B 224 HIS B 229 -1 N VAL B 227 O GLN B 235 SSBOND 1 CYS A 166 CYS A 180 1555 1555 2.20 SSBOND 2 CYS A 222 CYS A 239 1555 1555 2.14 SSBOND 3 CYS B 166 CYS B 180 1555 1555 2.15 SSBOND 4 CYS B 222 CYS B 239 1555 1555 2.10 LINK OG SER A 69 C15 AIX A 501 1555 1555 1.31 LINK OG SER B 69 C15 AIX B 501 1555 1555 1.42 CISPEP 1 PRO A 411 PRO A 412 0 -5.37 CISPEP 2 PRO B 411 PRO B 412 0 -5.38 SITE 1 AC1 10 ALA A 68 SER A 69 PHE A 167 SER A 310 SITE 2 AC1 10 ASN A 312 LEU A 362 THR A 421 GLY A 422 SITE 3 AC1 10 SER A 423 HOH A 550 SITE 1 AC2 10 ALA B 68 SER B 69 PHE B 167 SER B 310 SITE 2 AC2 10 ASN B 312 LEU B 362 LYS B 420 THR B 421 SITE 3 AC2 10 GLY B 422 SER B 423 CRYST1 64.449 92.343 104.409 90.00 107.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015516 0.000000 0.004938 0.00000 SCALE2 0.000000 0.010829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010051 0.00000