HEADER TRANSCRIPTION 17-SEP-09 3A77 TITLE THE CRYSTAL STRUCTURE OF PHOSPHORYLATED IRF-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 189-427; COMPND 5 SYNONYM: IRF-3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPRO EX HTB KEYWDS PHOSPHORYLATED PROTEIN, ACTIVATOR, ANTIVIRAL DEFENSE, DNA-BINDING, KEYWDS 2 HOST-VIRUS INTERACTION, NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAKAHASI,M.HORIUCHI,N.N.NODA,F.INAGAKI REVDAT 3 30-OCT-24 3A77 1 REMARK REVDAT 2 01-NOV-23 3A77 1 REMARK SEQADV LINK REVDAT 1 04-AUG-10 3A77 0 JRNL AUTH K.TAKAHASI,M.HORIUCHI,K.FUJII,S.NAKAMURA,N.N.NODA, JRNL AUTH 2 M.YONEYAMA,T.FUJITA,F.INAGAKI JRNL TITL SER386 PHOSPHORYLATION OF TRANSCRIPTION FACTOR IRF-3 INDUCES JRNL TITL 2 DIMERIZATION AND ASSOCIATION WITH CBP/P300 WITHOUT OVERALL JRNL TITL 3 CONFORMATIONAL CHANGE. JRNL REF GENES CELLS V. 15 901 2010 JRNL REFN ISSN 1356-9597 JRNL PMID 20604809 JRNL DOI 10.1111/J.1365-2443.2010.01427.X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 104991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 10499 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2294 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 214 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 1007 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 0.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17900 REMARK 3 B22 (A**2) : -0.67500 REMARK 3 B33 (A**2) : 0.49600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000028897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1J2F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 50MM SODIUM ACETATE PH 5.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 81.73450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.22950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.73450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.22950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 186 REMARK 465 ALA A 187 REMARK 465 MET A 188 REMARK 465 GLY A 230 REMARK 465 SER A 231 REMARK 465 GLU A 232 REMARK 465 VAL A 233 REMARK 465 GLY A 234 REMARK 465 ASP A 235 REMARK 465 ARG A 236 REMARK 465 GLY B 186 REMARK 465 ALA B 187 REMARK 465 MET B 188 REMARK 465 VAL B 233 REMARK 465 GLY B 234 REMARK 465 ASP B 235 REMARK 465 ARG B 236 REMARK 465 SER B 427 REMARK 465 GLY C 186 REMARK 465 ALA C 187 REMARK 465 MET C 188 REMARK 465 GLU C 232 REMARK 465 VAL C 233 REMARK 465 GLY C 234 REMARK 465 ASP C 235 REMARK 465 ARG C 236 REMARK 465 SER C 427 REMARK 465 GLY D 186 REMARK 465 ALA D 187 REMARK 465 MET D 188 REMARK 465 GLU D 189 REMARK 465 SER D 231 REMARK 465 GLU D 232 REMARK 465 VAL D 233 REMARK 465 GLY D 234 REMARK 465 ASP D 235 REMARK 465 ARG D 236 REMARK 465 THR D 237 REMARK 465 SER D 427 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 GLU C 189 CG CD OE1 OE2 REMARK 470 ARG C 255 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 399 CG ND1 CD2 CE1 NE2 REMARK 470 GLN D 422 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 289 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 251 -16.39 -149.04 REMARK 500 TYR A 342 -1.47 -140.73 REMARK 500 GLN A 354 10.09 -144.35 REMARK 500 GLN A 356 65.66 38.79 REMARK 500 SER B 251 -19.58 -147.86 REMARK 500 SER B 385 -156.54 -151.08 REMARK 500 PRO B 424 98.87 -47.61 REMARK 500 SER C 251 -48.38 -142.21 REMARK 500 PRO C 353 59.00 -69.23 REMARK 500 LEU C 387 -178.22 -67.82 REMARK 500 MET D 250 48.86 -108.01 REMARK 500 SER D 251 -28.48 -164.75 REMARK 500 TYR D 342 -3.31 -140.37 REMARK 500 ALA D 384 -116.22 91.62 REMARK 500 SER D 385 133.44 169.38 REMARK 500 SEP D 386 -28.60 175.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 3004 DBREF 3A77 A 189 427 UNP Q14653 IRF3_HUMAN 189 427 DBREF 3A77 B 189 427 UNP Q14653 IRF3_HUMAN 189 427 DBREF 3A77 C 189 427 UNP Q14653 IRF3_HUMAN 189 427 DBREF 3A77 D 189 427 UNP Q14653 IRF3_HUMAN 189 427 SEQADV 3A77 GLY A 186 UNP Q14653 EXPRESSION TAG SEQADV 3A77 ALA A 187 UNP Q14653 EXPRESSION TAG SEQADV 3A77 MET A 188 UNP Q14653 EXPRESSION TAG SEQADV 3A77 GLY B 186 UNP Q14653 EXPRESSION TAG SEQADV 3A77 ALA B 187 UNP Q14653 EXPRESSION TAG SEQADV 3A77 MET B 188 UNP Q14653 EXPRESSION TAG SEQADV 3A77 GLY C 186 UNP Q14653 EXPRESSION TAG SEQADV 3A77 ALA C 187 UNP Q14653 EXPRESSION TAG SEQADV 3A77 MET C 188 UNP Q14653 EXPRESSION TAG SEQADV 3A77 GLY D 186 UNP Q14653 EXPRESSION TAG SEQADV 3A77 ALA D 187 UNP Q14653 EXPRESSION TAG SEQADV 3A77 MET D 188 UNP Q14653 EXPRESSION TAG SEQRES 1 A 242 GLY ALA MET GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 A 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 A 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 A 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 A 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 A 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 A 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 A 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 A 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 A 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 A 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 A 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 A 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 A 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 A 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 A 242 VAL GLY GLY ALA SER SEP LEU GLU ASN THR VAL ASP LEU SEQRES 17 A 242 HIS ILE SER ASN SER HIS PRO LEU SEP LEU THR SER ASP SEQRES 18 A 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 A 242 ASP PHE GLN GLY PRO GLY GLU SER SEQRES 1 B 242 GLY ALA MET GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 B 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 B 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 B 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 B 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 B 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 B 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 B 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 B 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 B 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 B 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 B 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 B 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 B 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 B 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 B 242 VAL GLY GLY ALA SER SEP LEU GLU ASN THR VAL ASP LEU SEQRES 17 B 242 HIS ILE SER ASN SER HIS PRO LEU SEP LEU THR SER ASP SEQRES 18 B 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 B 242 ASP PHE GLN GLY PRO GLY GLU SER SEQRES 1 C 242 GLY ALA MET GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 C 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 C 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 C 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 C 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 C 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 C 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 C 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 C 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 C 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 C 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 C 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 C 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 C 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 C 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 C 242 VAL GLY GLY ALA SER SEP LEU GLU ASN THR VAL ASP LEU SEQRES 17 C 242 HIS ILE SER ASN SER HIS PRO LEU SEP LEU THR SER ASP SEQRES 18 C 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 C 242 ASP PHE GLN GLY PRO GLY GLU SER SEQRES 1 D 242 GLY ALA MET GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 D 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 D 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 D 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 D 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 D 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 D 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 D 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 D 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 D 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 D 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 D 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 D 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 D 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 D 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 D 242 VAL GLY GLY ALA SER SEP LEU GLU ASN THR VAL ASP LEU SEQRES 17 D 242 HIS ILE SER ASN SER HIS PRO LEU SEP LEU THR SER ASP SEQRES 18 D 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 D 242 ASP PHE GLN GLY PRO GLY GLU SER MODRES 3A77 SEP A 386 SER PHOSPHOSERINE MODRES 3A77 SEP A 402 SER PHOSPHOSERINE MODRES 3A77 SEP B 386 SER PHOSPHOSERINE MODRES 3A77 SEP B 402 SER PHOSPHOSERINE MODRES 3A77 SEP C 386 SER PHOSPHOSERINE MODRES 3A77 SEP C 402 SER PHOSPHOSERINE MODRES 3A77 SEP D 386 SER PHOSPHOSERINE MODRES 3A77 SEP D 402 SER PHOSPHOSERINE HET SEP A 386 10 HET SEP A 402 10 HET SEP B 386 10 HET SEP B 402 10 HET SEP C 386 10 HET SEP C 402 10 HET SEP D 386 10 HET SEP D 402 10 HET ACY A2001 4 HET MPD A3002 8 HET MPD B3001 8 HET ACY C2003 4 HET MPD C3003 8 HET MPD D3004 8 HETNAM SEP PHOSPHOSERINE HETNAM ACY ACETIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP 8(C3 H8 N O6 P) FORMUL 5 ACY 2(C2 H4 O2) FORMUL 6 MPD 4(C6 H14 O2) FORMUL 11 HOH *1007(H2 O) HELIX 1 1 ASN A 190 LEU A 196 5 7 HELIX 2 2 ASP A 247 SER A 251 5 5 HELIX 3 3 ASP A 254 LEU A 268 1 15 HELIX 4 4 LEU A 322 GLU A 334 1 13 HELIX 5 5 GLN A 356 ARG A 361 1 6 HELIX 6 6 THR A 370 ALA A 384 1 15 HELIX 7 7 THR A 404 GLU A 417 1 14 HELIX 8 8 ASN B 190 LEU B 196 5 7 HELIX 9 9 ASP B 247 SER B 251 5 5 HELIX 10 10 ASP B 254 LEU B 268 1 15 HELIX 11 11 LEU B 322 GLU B 334 1 13 HELIX 12 12 THR B 370 GLY B 383 1 14 HELIX 13 13 THR B 404 GLU B 417 1 14 HELIX 14 14 ASN C 190 LEU C 196 5 7 HELIX 15 15 ASP C 247 SER C 251 5 5 HELIX 16 16 ASP C 254 LEU C 268 1 15 HELIX 17 17 LEU C 322 GLU C 334 1 13 HELIX 18 18 GLN C 356 ARG C 361 1 6 HELIX 19 19 THR C 370 GLY C 383 1 14 HELIX 20 20 SER C 405 GLY C 418 1 14 HELIX 21 21 ASN D 190 LEU D 196 5 7 HELIX 22 22 ASP D 247 SER D 251 5 5 HELIX 23 23 ASP D 254 LEU D 268 1 15 HELIX 24 24 LEU D 322 GLU D 334 1 13 HELIX 25 25 THR D 370 VAL D 381 1 12 HELIX 26 26 THR D 404 GLY D 418 1 15 SHEET 1 A 6 ARG A 213 SER A 221 0 SHEET 2 A 6 GLU A 203 TYR A 210 -1 N VAL A 206 O GLN A 218 SHEET 3 A 6 VAL A 363 PRO A 369 -1 O LYS A 366 N THR A 207 SHEET 4 A 6 ALA A 343 VAL A 348 -1 N LEU A 344 O VAL A 367 SHEET 5 A 6 THR A 291 SER A 296 -1 N ALA A 294 O TRP A 345 SHEET 6 A 6 GLY A 309 GLU A 310 -1 O GLY A 309 N TRP A 293 SHEET 1 B 5 TRP A 241 THR A 244 0 SHEET 2 B 5 LEU A 226 VAL A 229 1 N ARG A 227 O VAL A 243 SHEET 3 B 5 LEU A 272 ALA A 277 -1 O LEU A 274 N LEU A 226 SHEET 4 B 5 TRP A 280 ARG A 285 -1 O TRP A 282 N TRP A 275 SHEET 5 B 5 GLY A 317 ASP A 321 -1 O VAL A 319 N LEU A 281 SHEET 1 C 2 ASN A 389 VAL A 391 0 SHEET 2 C 2 LEU A 401 LEU A 403 -1 O LEU A 401 N VAL A 391 SHEET 1 D 6 ARG B 213 SER B 221 0 SHEET 2 D 6 GLU B 203 TYR B 210 -1 N VAL B 206 O GLN B 218 SHEET 3 D 6 VAL B 363 PRO B 369 -1 O LYS B 366 N THR B 207 SHEET 4 D 6 ALA B 343 VAL B 348 -1 N LEU B 344 O VAL B 367 SHEET 5 D 6 THR B 291 SER B 296 -1 N TYR B 292 O CYS B 347 SHEET 6 D 6 GLY B 309 GLU B 310 -1 O GLY B 309 N TRP B 293 SHEET 1 E 5 TRP B 241 THR B 244 0 SHEET 2 E 5 LEU B 226 VAL B 229 1 N ARG B 227 O VAL B 243 SHEET 3 E 5 LEU B 272 ALA B 277 -1 O LEU B 274 N LEU B 226 SHEET 4 E 5 TRP B 280 ARG B 285 -1 O TRP B 282 N TRP B 275 SHEET 5 E 5 GLY B 317 ASP B 321 -1 O GLY B 317 N ALA B 283 SHEET 1 F 2 ASN B 389 VAL B 391 0 SHEET 2 F 2 LEU B 401 LEU B 403 -1 O LEU B 401 N VAL B 391 SHEET 1 G 6 ARG C 213 ILE C 220 0 SHEET 2 G 6 PHE C 204 TYR C 210 -1 N VAL C 206 O GLN C 218 SHEET 3 G 6 VAL C 363 PRO C 369 -1 O MET C 364 N PHE C 209 SHEET 4 G 6 ALA C 343 VAL C 348 -1 N LEU C 344 O VAL C 367 SHEET 5 G 6 THR C 291 SER C 296 -1 N TYR C 292 O CYS C 347 SHEET 6 G 6 GLY C 309 GLU C 310 -1 O GLY C 309 N TRP C 293 SHEET 1 H 5 TRP C 241 THR C 244 0 SHEET 2 H 5 LEU C 226 VAL C 229 1 N ARG C 227 O VAL C 243 SHEET 3 H 5 LEU C 272 ALA C 277 -1 O LEU C 274 N LEU C 226 SHEET 4 H 5 TRP C 280 ARG C 285 -1 O TRP C 282 N TRP C 275 SHEET 5 H 5 GLY C 317 ASP C 321 -1 O VAL C 319 N LEU C 281 SHEET 1 I 2 GLU C 388 VAL C 391 0 SHEET 2 I 2 LEU C 401 THR C 404 -1 O LEU C 403 N ASN C 389 SHEET 1 J 6 ARG D 213 SER D 221 0 SHEET 2 J 6 GLU D 203 TYR D 210 -1 N VAL D 206 O GLN D 218 SHEET 3 J 6 VAL D 363 PRO D 369 -1 O LYS D 366 N THR D 207 SHEET 4 J 6 ALA D 343 VAL D 348 -1 N LEU D 344 O VAL D 367 SHEET 5 J 6 THR D 291 SER D 296 -1 N TYR D 292 O CYS D 347 SHEET 6 J 6 GLY D 309 GLU D 310 -1 O GLY D 309 N TRP D 293 SHEET 1 K 5 TRP D 241 THR D 244 0 SHEET 2 K 5 LEU D 226 VAL D 229 1 N ARG D 227 O VAL D 243 SHEET 3 K 5 LEU D 272 ALA D 277 -1 O LEU D 274 N LEU D 226 SHEET 4 K 5 TRP D 280 ARG D 285 -1 O TRP D 282 N TRP D 275 SHEET 5 K 5 GLY D 317 ASP D 321 -1 O VAL D 319 N LEU D 281 SHEET 1 L 2 ASN D 389 VAL D 391 0 SHEET 2 L 2 LEU D 401 LEU D 403 -1 O LEU D 403 N ASN D 389 SSBOND 1 CYS A 267 CYS A 289 1555 1555 2.04 SSBOND 2 CYS B 267 CYS B 289 1555 1555 2.03 SSBOND 3 CYS C 267 CYS C 289 1555 1555 2.03 SSBOND 4 CYS D 267 CYS D 289 1555 1555 2.03 LINK C SER A 385 N SEP A 386 1555 1555 1.33 LINK C SEP A 386 N LEU A 387 1555 1555 1.33 LINK C LEU A 401 N SEP A 402 1555 1555 1.33 LINK C SEP A 402 N LEU A 403 1555 1555 1.33 LINK C SER B 385 N SEP B 386 1555 1555 1.33 LINK C SEP B 386 N LEU B 387 1555 1555 1.33 LINK C LEU B 401 N SEP B 402 1555 1555 1.33 LINK C SEP B 402 N LEU B 403 1555 1555 1.33 LINK C SER C 385 N SEP C 386 1555 1555 1.33 LINK C SEP C 386 N LEU C 387 1555 1555 1.33 LINK C LEU C 401 N SEP C 402 1555 1555 1.33 LINK C SEP C 402 N LEU C 403 1555 1555 1.33 LINK C SER D 385 N SEP D 386 1555 1555 1.33 LINK C SEP D 386 N LEU D 387 1555 1555 1.32 LINK C LEU D 401 N SEP D 402 1555 1555 1.33 LINK C SEP D 402 N LEU D 403 1555 1555 1.33 SITE 1 AC1 4 GLN A 356 PRO A 357 TRP A 358 HOH A1019 SITE 1 AC2 4 PRO A 239 ALA A 273 TRP A 275 HOH A1856 SITE 1 AC3 6 GLU B 224 PRO B 239 TRP B 275 GLN B 284 SITE 2 AC3 6 HOH B1101 HOH B1180 SITE 1 AC4 4 GLN C 356 PRO C 357 TRP C 358 HOH C1215 SITE 1 AC5 5 GLU C 224 PRO C 239 TRP C 275 GLN C 284 SITE 2 AC5 5 HOH C1203 SITE 1 AC6 5 GLU D 224 PRO D 239 TRP D 275 HOH D1075 SITE 2 AC6 5 HOH D1099 CRYST1 163.469 102.459 68.921 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014509 0.00000